ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart58e05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 147 3e-32
2gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome... 147 3e-32
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 147 3e-32
4dbj|AK106358.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 7e-30
5dbj|AK106420.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.31
6gb|AC147646.2| Gallus gallus BAC clone CH261-13L1 from chromosom... 42 1.2
7gb|AC163351.2| Mus musculus BAC clone RP23-150D4 from chromosome... 40 4.9
8gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 4.9
9gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 4.9
10gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 4.9
11gb|AC122402.2| Mus musculus BAC clone RP24-108B4 from chromosome... 40 4.9
12gb|AF496108.1| Lactobacillus delbrueckii subsp. lactis 50s ribos... 40 4.9
13gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 4.9
14emb|BX294143.1| Pirellula sp. strain 1 complete genome; segment ... 40 4.9
15dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 4.9
16gb|AF124817.1|AF124817 Mentha x piperita cytochrome p450 isoform... 40 4.9
17dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 4.9
18emb|BX682231.5| Mouse DNA sequence from clone RP24-369N16 on chr... 40 4.9
19emb|CT025832.1| Acinetobacter baumannii str. AYE. Genomics of Mu... 40 4.9
20emb|AL807800.7| Mouse DNA sequence from clone RP23-438D2 on chro... 40 4.9 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  147 bits (74), Expect = 3e-32
 Identities = 119/134 (88%)
 Strand = Plus / Minus

                                                                           
Query: 198     agcaaccccgacaggaacttctctctgaggaacttgatcgccgggttgctgctctgctgc 257
               ||||| || |||| ||||||||| ||||||||||||||| |||||||| |||||||||| 
Sbjct: 2976971 agcaatcctgacaagaacttctccctgaggaacttgatcaccgggttggtgctctgctgg 2976912

                                                                           
Query: 258     acgaagccgacgacgtacgcggccgtgaccagccggatggcgcgccacctccgctcctcg 317
               | ||||||||||||||| || ||||||| |||||||||| ||||||||| || |||||||
Sbjct: 2976911 atgaagccgacgacgtaggccgccgtgatcagccggatgccgcgccaccgcctctcctcg 2976852

                             
Query: 318     gcgtacttcgccag 331
               ||||||||| ||||
Sbjct: 2976851 gcgtacttctccag 2976838



 Score =  147 bits (74), Expect = 3e-32
 Identities = 119/134 (88%)
 Strand = Plus / Minus

                                                                           
Query: 198     agcaaccccgacaggaacttctctctgaggaacttgatcgccgggttgctgctctgctgc 257
               ||||| || |||| ||||||||| ||||||||||||||| |||||||| |||||||||| 
Sbjct: 2948575 agcaatcctgacaagaacttctccctgaggaacttgatcaccgggttggtgctctgctgg 2948516

                                                                           
Query: 258     acgaagccgacgacgtacgcggccgtgaccagccggatggcgcgccacctccgctcctcg 317
               | ||||||||||||||| || ||||||| |||||||||| ||||||||| || |||||||
Sbjct: 2948515 atgaagccgacgacgtaggccgccgtgatcagccggatgccgcgccaccgcctctcctcg 2948456

                             
Query: 318     gcgtacttcgccag 331
               ||||||||| ||||
Sbjct: 2948455 gcgtacttctccag 2948442



 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 249     ctctgctgcacgaagccgacgacgta 274
               ||||||||||||| ||||||||||||
Sbjct: 2941843 ctctgctgcacgatgccgacgacgta 2941818
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>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0016I15,
              complete sequence
          Length = 166282

 Score =  147 bits (74), Expect = 3e-32
 Identities = 119/134 (88%)
 Strand = Plus / Minus

                                                                          
Query: 198    agcaaccccgacaggaacttctctctgaggaacttgatcgccgggttgctgctctgctgc 257
              ||||| || |||| ||||||||| ||||||||||||||| |||||||| |||||||||| 
Sbjct: 114458 agcaatcctgacaagaacttctccctgaggaacttgatcaccgggttggtgctctgctgg 114399

                                                                          
Query: 258    acgaagccgacgacgtacgcggccgtgaccagccggatggcgcgccacctccgctcctcg 317
              | ||||||||||||||| || ||||||| |||||||||| ||||||||| || |||||||
Sbjct: 114398 atgaagccgacgacgtaggccgccgtgatcagccggatgccgcgccaccgcctctcctcg 114339

                            
Query: 318    gcgtacttcgccag 331
              ||||||||| ||||
Sbjct: 114338 gcgtacttctccag 114325



 Score =  147 bits (74), Expect = 3e-32
 Identities = 119/134 (88%)
 Strand = Plus / Minus

                                                                         
Query: 198   agcaaccccgacaggaacttctctctgaggaacttgatcgccgggttgctgctctgctgc 257
             ||||| || |||| ||||||||| ||||||||||||||| |||||||| |||||||||| 
Sbjct: 86062 agcaatcctgacaagaacttctccctgaggaacttgatcaccgggttggtgctctgctgg 86003

                                                                         
Query: 258   acgaagccgacgacgtacgcggccgtgaccagccggatggcgcgccacctccgctcctcg 317
             | ||||||||||||||| || ||||||| |||||||||| ||||||||| || |||||||
Sbjct: 86002 atgaagccgacgacgtaggccgccgtgatcagccggatgccgcgccaccgcctctcctcg 85943

                           
Query: 318   gcgtacttcgccag 331
             ||||||||| ||||
Sbjct: 85942 gcgtacttctccag 85929



 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 249   ctctgctgcacgaagccgacgacgta 274
             ||||||||||||| ||||||||||||
Sbjct: 79330 ctctgctgcacgatgccgacgacgta 79305
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  147 bits (74), Expect = 3e-32
 Identities = 119/134 (88%)
 Strand = Plus / Minus

                                                                           
Query: 198     agcaaccccgacaggaacttctctctgaggaacttgatcgccgggttgctgctctgctgc 257
               ||||| || |||| ||||||||| ||||||||||||||| |||||||| |||||||||| 
Sbjct: 2977082 agcaatcctgacaagaacttctccctgaggaacttgatcaccgggttggtgctctgctgg 2977023

                                                                           
Query: 258     acgaagccgacgacgtacgcggccgtgaccagccggatggcgcgccacctccgctcctcg 317
               | ||||||||||||||| || ||||||| |||||||||| ||||||||| || |||||||
Sbjct: 2977022 atgaagccgacgacgtaggccgccgtgatcagccggatgccgcgccaccgcctctcctcg 2976963

                             
Query: 318     gcgtacttcgccag 331
               ||||||||| ||||
Sbjct: 2976962 gcgtacttctccag 2976949



 Score =  147 bits (74), Expect = 3e-32
 Identities = 119/134 (88%)
 Strand = Plus / Minus

                                                                           
Query: 198     agcaaccccgacaggaacttctctctgaggaacttgatcgccgggttgctgctctgctgc 257
               ||||| || |||| ||||||||| ||||||||||||||| |||||||| |||||||||| 
Sbjct: 2948686 agcaatcctgacaagaacttctccctgaggaacttgatcaccgggttggtgctctgctgg 2948627

                                                                           
Query: 258     acgaagccgacgacgtacgcggccgtgaccagccggatggcgcgccacctccgctcctcg 317
               | ||||||||||||||| || ||||||| |||||||||| ||||||||| || |||||||
Sbjct: 2948626 atgaagccgacgacgtaggccgccgtgatcagccggatgccgcgccaccgcctctcctcg 2948567

                             
Query: 318     gcgtacttcgccag 331
               ||||||||| ||||
Sbjct: 2948566 gcgtacttctccag 2948553



 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 249     ctctgctgcacgaagccgacgacgta 274
               ||||||||||||| ||||||||||||
Sbjct: 2941954 ctctgctgcacgatgccgacgacgta 2941929
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>dbj|AK106358.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-A09, full
            insert sequence
          Length = 1661

 Score =  139 bits (70), Expect = 7e-30
 Identities = 118/134 (88%)
 Strand = Plus / Minus

                                                                        
Query: 198  agcaaccccgacaggaacttctctctgaggaacttgatcgccgggttgctgctctgctgc 257
            ||||| || |||| ||||||||| ||||||||||||||| |||||||| |||||||||| 
Sbjct: 1274 agcaatcctgacaagaacttctccctgaggaacttgatcaccgggttggtgctctgctgg 1215

                                                                        
Query: 258  acgaagccgacgacgtacgcggccgtgaccagccggatggcgcgccacctccgctcctcg 317
            | ||||||||||||||| || ||||||  |||||||||| ||||||||| || |||||||
Sbjct: 1214 atgaagccgacgacgtaggccgccgtggtcagccggatgccgcgccaccgcctctcctcg 1155

                          
Query: 318  gcgtacttcgccag 331
            ||||||||| ||||
Sbjct: 1154 gcgtacttctccag 1141
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>dbj|AK106420.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B02, full
            insert sequence
          Length = 1590

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 249  ctctgctgcacgaagccgacgacgta 274
            ||||||||||||| ||||||||||||
Sbjct: 1359 ctctgctgcacgatgccgacgacgta 1334
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>gb|AC147646.2| Gallus gallus BAC clone CH261-13L1 from chromosome unknown, complete
              sequence
          Length = 238934

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 5      tgtaagataattatttcacat 25
              |||||||||||||||||||||
Sbjct: 170214 tgtaagataattatttcacat 170234
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>gb|AC163351.2| Mus musculus BAC clone RP23-150D4 from chromosome 13, complete sequence
          Length = 214062

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 19     ttcacatctggatctgatagcaga 42
              ||||||||||||||||| ||||||
Sbjct: 104873 ttcacatctggatctgaaagcaga 104896
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 166     cgtagtcggccatgtcgaccatca 189
               |||||| |||||||||||||||||
Sbjct: 3121354 cgtagtgggccatgtcgaccatca 3121377
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 166    cgtagtcggccatgtcgaccatca 189
              |||||| |||||||||||||||||
Sbjct: 811765 cgtagtgggccatgtcgaccatca 811742
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 166     cgtagtcggccatgtcgaccatca 189
               |||||| |||||||||||||||||
Sbjct: 2666685 cgtagtgggccatgtcgaccatca 2666708
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>gb|AC122402.2| Mus musculus BAC clone RP24-108B4 from chromosome 13, complete sequence
          Length = 175669

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 19     ttcacatctggatctgatagcaga 42
              ||||||||||||||||| ||||||
Sbjct: 172580 ttcacatctggatctgaaagcaga 172557
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>gb|AF496108.1| Lactobacillus delbrueckii subsp. lactis 50s ribosomal protein L19
           gene, partial cds
          Length = 318

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 267 acgacgtacgcggccgtgac 286
           ||||||||||||||||||||
Sbjct: 143 acgacgtacgcggccgtgac 124
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 334     cggcctcggcgctcccgtgcccgc 357
               ||||||||||||| ||||||||||
Sbjct: 2520468 cggcctcggcgctgccgtgcccgc 2520445
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>emb|BX294143.1| Pirellula sp. strain 1 complete genome; segment 11/24
          Length = 303250

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 166    cgtagtcggccatgtcgaccatca 189
              |||||| |||||||||||||||||
Sbjct: 230174 cgtagtgggccatgtcgaccatca 230151
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 283     tgaccagccggatggcgcgc 302
               ||||||||||||||||||||
Sbjct: 1479193 tgaccagccggatggcgcgc 1479174
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>gb|AF124817.1|AF124817 Mentha x piperita cytochrome p450 isoform PM2 mRNA, complete cds
          Length = 1497

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 300 cgccacctccgctcctcggc 319
           ||||||||||||||||||||
Sbjct: 481 cgccacctccgctcctcggc 500
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 341     ggcgctcccgtgcccgccgg 360
               ||||||||||||||||||||
Sbjct: 8012988 ggcgctcccgtgcccgccgg 8012969
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>emb|BX682231.5| Mouse DNA sequence from clone RP24-369N16 on chromosome 2, complete
            sequence
          Length = 48121

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   tttcacatctggatctgata 37
            ||||||||||||||||||||
Sbjct: 8122 tttcacatctggatctgata 8141
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>emb|CT025832.1| Acinetobacter baumannii str. AYE. Genomics of Multi-Drug Resistance in
             Acinetobacter baumannii
          Length = 100001

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    gcatcaaatcgatttgattg 90
             ||||||||||||||||||||
Sbjct: 18406 gcatcaaatcgatttgattg 18387
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>emb|AL807800.7| Mouse DNA sequence from clone RP23-438D2 on chromosome 2, complete
             sequence
          Length = 176808

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    aattatttcacatctggatc 32
             ||||||||||||||||||||
Sbjct: 53661 aattatttcacatctggatc 53642


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,713,679
Number of Sequences: 3902068
Number of extensions: 2713679
Number of successful extensions: 52918
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52407
Number of HSP's gapped (non-prelim): 511
length of query: 369
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 347
effective length of database: 17,147,199,772
effective search space: 5950078320884
effective search space used: 5950078320884
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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