ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart58d10 |
|---|---|
| Clone Library Name | barley_pub |
>PSD12_PONPY (Q5RBI3) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 40.0 bits (92), Expect = 0.001 Identities = 17/35 (48%), Positives = 22/35 (62%) Frame = -2 Query: 333 QDSNGVLNSWASNLEKLLDLVEKSCHQIHKETMIH 229 +D N +LN W+ L L+ LV K+ H I KE MIH Sbjct: 418 KDPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIH 452
>PSD12_MOUSE (Q9D8W5) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 40.0 bits (92), Expect = 0.001 Identities = 17/35 (48%), Positives = 22/35 (62%) Frame = -2 Query: 333 QDSNGVLNSWASNLEKLLDLVEKSCHQIHKETMIH 229 +D N +LN W+ L L+ LV K+ H I KE MIH Sbjct: 418 KDPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIH 452
>PSD12_HUMAN (O00232) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 40.0 bits (92), Expect = 0.001 Identities = 17/35 (48%), Positives = 22/35 (62%) Frame = -2 Query: 333 QDSNGVLNSWASNLEKLLDLVEKSCHQIHKETMIH 229 +D N +LN W+ L L+ LV K+ H I KE MIH Sbjct: 418 KDPNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIH 452
>L_RINDR (P41357) Large structural protein (Protein L) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2183 Score = 33.1 bits (74), Expect = 0.18 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Frame = +1 Query: 118 LFYPSSDSEFRS-IESTTHTTYTRPFSSKWFSGFQHRLVDHRLLVYLVAALLHQVQEL 288 LF+ + +E RS I+S+ HT++ R + +FSG ++ R LV +V LH V L Sbjct: 166 LFWFTIKTEMRSTIKSSVHTSHRRRYVPSFFSGDSFEILISRDLVAIVHRRLHHVYYL 223
>CD1D1_MOUSE (P11609) T-cell surface glycoprotein CD1d1 precursor (CD1.1| antigen) Length = 336 Score = 32.3 bits (72), Expect = 0.30 Identities = 21/82 (25%), Positives = 40/82 (48%) Frame = +1 Query: 85 ANRRCSHLSGELFYPSSDSEFRSIESTTHTTYTRPFSSKWFSGFQHRLVDHRLLVYLVAA 264 ANR S ++ + S +S T ++T+P+S S Q + H VY V+ Sbjct: 37 ANRSWSRTDSVVWLGDLQTHRWSNDSAT-ISFTKPWSQGKLSNQQWEKLQHMFQVYRVS- 94 Query: 265 LLHQVQELLQVRRPRVEHPVAV 330 +QEL+++ P+ ++P+ + Sbjct: 95 FTRDIQELVKMMSPKEDYPIEI 116
>CD1D2_MOUSE (P11610) T-cell surface glycoprotein CD1d2 precursor (CD1.2| antigen) Length = 336 Score = 30.8 bits (68), Expect = 0.87 Identities = 14/52 (26%), Positives = 29/52 (55%) Frame = +1 Query: 175 TYTRPFSSKWFSGFQHRLVDHRLLVYLVAALLHQVQELLQVRRPRVEHPVAV 330 ++T+P+S S Q + H VY V+ +QEL+++ P+ ++P+ + Sbjct: 66 SFTKPWSQGKLSNQQWEKLQHMFQVYRVS-FTRDIQELVKMMSPKEDYPIEI 116
>GUNS_CLOTM (P38686) Endoglucanase SS precursor (EC 3.2.1.4) (EGSS)| (Endo-1,4-beta-glucanase) (Cellulase SS) Length = 741 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +1 Query: 124 YPSSDSEFRSIESTTHTTYTRPFSSKWFSGFQ 219 YP+ S F + H Y P S++WF GFQ Sbjct: 413 YPAGTSTFYGMAYVPHPVYADPGSNQWF-GFQ 443
>EPD_BRARE (P17561) Ependymin precursor (EPD)| Length = 217 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +1 Query: 109 SGELFYPSSDSEFRSIESTTHTTYT 183 SGE Y S ++FR +E TTH T Sbjct: 51 SGEFSYDSKTNKFRFVEDTTHANKT 75
>7B2_MOUSE (P12961) Neuroendocrine protein 7B2 precursor (Secretogranin V)| [Contains: N-terminal peptide; C-terminal peptide] Length = 212 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = +1 Query: 256 VAALLHQVQELLQVRRPRVEHP 321 + LLH V E L + RPRVE+P Sbjct: 40 IQRLLHGVMEQLGIARPRVEYP 61
>7B2_HUMAN (P05408) Neuroendocrine protein 7B2 precursor (Secretory granule| endocrine protein I) (Secretogranin V) (Pituitary polypeptide) [Contains: N-terminal peptide; C-terminal peptide] Length = 212 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = +1 Query: 256 VAALLHQVQELLQVRRPRVEHP 321 + LLH V E L + RPRVE+P Sbjct: 40 IQRLLHGVMEQLGIARPRVEYP 61
>RPN5_SCHPO (Q9UTM3) 26S proteasome regulatory subunit rpn5| Length = 443 Score = 28.1 bits (61), Expect = 5.7 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%) Frame = -2 Query: 336 AQDSNGVLNSWASNLEKLLDLVEKSCHQIHKETM---IHKAVLK 214 +Q+ LN W SN+ +LL +EK I KE M I +AV K Sbjct: 400 SQNVQEQLNEWGSNITELLGKLEKVRQLIIKEEMMNSIQQAVAK 443
>7B2_RAT (P27682) Neuroendocrine protein 7B2 precursor (Secretogranin V)| [Contains: N-terminal peptide; C-terminal peptide] Length = 210 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = +1 Query: 256 VAALLHQVQELLQVRRPRVEHP 321 + LLH V E L + RPRVE+P Sbjct: 38 IQRLLHGVMEQLGIARPRVEYP 59
>7B2_PIG (P01165) Neuroendocrine protein 7B2 precursor (Secretogranin V)| [Contains: N-terminal peptide; C-terminal peptide] Length = 207 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = +1 Query: 256 VAALLHQVQELLQVRRPRVEHP 321 + LLH V E L + RPRVE+P Sbjct: 36 IQRLLHGVMEQLGIARPRVEYP 57
>SYM_FRATT (Q5NFE7) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 674 Score = 27.7 bits (60), Expect = 7.4 Identities = 19/67 (28%), Positives = 29/67 (43%) Frame = +1 Query: 106 LSGELFYPSSDSEFRSIESTTHTTYTRPFSSKWFSGFQHRLVDHRLLVYLVAALLHQVQE 285 LSGE+F P +SEF S H T+ F + F+ V L+ AL + + Sbjct: 406 LSGEIFDPELESEF----SKNHDAITQAFEKREFAH----------AVRLIMALADKANQ 451 Query: 286 LLQVRRP 306 + +P Sbjct: 452 FIDYHKP 458
>TALA_DICDI (P54633) Filopodin (Talin homolog)| Length = 2492 Score = 27.7 bits (60), Expect = 7.4 Identities = 21/69 (30%), Positives = 30/69 (43%) Frame = +1 Query: 70 TRVPKANRRCSHLSGELFYPSSDSEFRSIESTTHTTYTRPFSSKWFSGFQHRLVDHRLLV 249 T + A R L GEL FRS T +TR F++ F+H+L+ H + Sbjct: 420 TDLKSALRATDLLIGEL------GGFRSSTGATPQNFTRSFTTLTPQQFKHQLISHTNAM 473 Query: 250 YLVAALLHQ 276 + A L Q Sbjct: 474 AIAAQGLFQ 482
>BC11A_MOUSE (Q9QYE3) B-cell lymphoma/leukemia 11A (B-cell CLL/lymphoma 11A)| (COUP-TF-interacting protein 1) (Ecotropic viral integration site 9 protein) (EVI-9) Length = 773 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = +1 Query: 160 STTHTTYTRPFSSKWFSGFQHRLVDHRLLVYL 255 S T TT +PF+S WF QH H L +YL Sbjct: 169 SYTCTTCKQPFTSAWFL-LQHAQNTHGLRIYL 199
>EPD_DANAE (Q90399) Ependymin precursor (EPD)| Length = 218 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +1 Query: 109 SGELFYPSSDSEFRSIESTTHTTYT 183 SGE Y S ++FR +E TTH T Sbjct: 52 SGEFNYDSKANKFRFVEDTTHANKT 76
>BC11A_HUMAN (Q9H165) B-cell lymphoma/leukemia 11A (B-cell CLL/lymphoma 11A)| (COUP-TF-interacting protein 1) (Ecotropic viral integration site 9 protein) (EVI-9) Length = 835 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = +1 Query: 160 STTHTTYTRPFSSKWFSGFQHRLVDHRLLVYL 255 S T TT +PF+S WF QH H L +YL Sbjct: 169 SYTCTTCKQPFTSAWFL-LQHAQNTHGLRIYL 199
>DOCK3_MOUSE (Q8CIQ7) Dedicator of cytokinesis protein 3 (Modifier of cell| adhesion) (Presenilin-binding protein) (PBP protein) Length = 2027 Score = 27.7 bits (60), Expect = 7.4 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Frame = +1 Query: 136 DSEFRS--IESTTHT-TYTRPFSSKWFSGFQHRLVDHRLLVYLVAALLHQVQEL 288 D+EF+S IE TT T T++ P S+WF + LV+ L + + ++ QEL Sbjct: 1465 DNEFKSLWIERTTLTLTHSLPGISRWFEVERRELVEVSPLENAIQVVENKNQEL 1518
>ADEC1_HUMAN (O15204) ADAM DEC1 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain-like protein decysin 1) (ADAM-like protein decysin 1) Length = 470 Score = 27.3 bits (59), Expect = 9.7 Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 9/72 (12%) Frame = -2 Query: 204 PF*TEWPCVGCVRSTLYGSKFTIAGWVKQFSAQVRA---------SPVCFGNSCVRTGLE 52 PF T+ P CV + SKF K FS RA P C + + T + Sbjct: 364 PFNTKCPSGSCVMNQYLSSKFP-----KDFSTSCRAHFERYLLSQKPKCLLQAPIPTNI- 417 Query: 51 IL*PQGMTTPIC 16 MTTP+C Sbjct: 418 ------MTTPVC 423
>INSI1_HUMAN (O15503) Insulin-induced gene 1 protein (INSIG-1)| Length = 277 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/49 (30%), Positives = 25/49 (51%) Frame = +1 Query: 187 PFSSKWFSGFQHRLVDHRLLVYLVAALLHQVQELLQVRRPRVEHPVAVL 333 P+ + W HRL+ L+++ V +L V LLQ++R P V+ Sbjct: 75 PYPNTW----HHRLLQRSLVLFSVGVVLALVLNLLQIQRNVTLFPEEVI 119
>UPPP2_BACHD (Q9KCP8) Undecaprenyl-diphosphatase 2 (EC 3.6.1.27) (Undecaprenyl| pyrophosphate phosphatase 2) (Bacitracin resistance protein 2) Length = 278 Score = 27.3 bits (59), Expect = 9.7 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = +1 Query: 139 SEFRSIESTTHTTYTRPFSSKWFSGFQHRLVDHRLLVYLVAALLHQVQELLQV 297 +EF I ST H T+ F GF + H + ++A +L+ ++LLQV Sbjct: 16 TEFLPISSTAHIVITQFLFDYTFPGFGFEIFLH--IASILAVILYFRKDLLQV 66 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,026,638 Number of Sequences: 219361 Number of extensions: 773100 Number of successful extensions: 2095 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2074 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2095 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
