ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart58d05 |
|---|---|
| Clone Library Name | barley_pub |
>GPAT5_ARATH (Q9CAY3) Glycerol-3-phosphate acyltransferase 5 (EC 2.3.1.15)| (AtGPAT5) Length = 502 Score = 122 bits (305), Expect = 4e-28 Identities = 54/86 (62%), Positives = 68/86 (79%) Frame = -1 Query: 410 GVKGLDPFYFFMNPSPGYVVTFLNKLPHELTCKGGKTSHEVANYIQRLIASTLSYECTNF 231 G KGLDP +FFMNP P Y +TFLN+LP E TC GK+ H+VANY+QR++A+TL +ECTNF Sbjct: 406 GWKGLDPIFFFMNPRPVYEITFLNQLPMEATCSSGKSPHDVANYVQRILAATLGFECTNF 465 Query: 230 TRKDKYKALAGNDGSVVSKPNIDKKK 153 TRKDKY+ LAGNDG+V +D+ K Sbjct: 466 TRKDKYRVLAGNDGTVSYLSLLDQLK 491
>GPAT7_ARATH (Q9LHS7) Putative glycerol-3-phosphate acyltransferase 7 (EC| 2.3.1.15) (AtGPAT7) Length = 500 Score = 116 bits (291), Expect = 2e-26 Identities = 53/86 (61%), Positives = 67/86 (77%) Frame = -1 Query: 410 GVKGLDPFYFFMNPSPGYVVTFLNKLPHELTCKGGKTSHEVANYIQRLIASTLSYECTNF 231 G KGLDP +FFMNP P Y VTFLN+L E TC GK+ ++VANY+QR++A+TL +ECTNF Sbjct: 404 GWKGLDPIFFFMNPRPVYEVTFLNQLEVEATCSSGKSPYDVANYVQRILAATLGFECTNF 463 Query: 230 TRKDKYKALAGNDGSVVSKPNIDKKK 153 TRKDKY+ LAGNDG+V +D+ K Sbjct: 464 TRKDKYRVLAGNDGTVSYLSFLDQVK 489
>GPAT6_ARATH (O80437) Glycerol-3-phosphate acyltransferase 6 (EC 2.3.1.15)| (AtGPAT6) Length = 501 Score = 110 bits (275), Expect = 1e-24 Identities = 51/79 (64%), Positives = 60/79 (75%) Frame = -1 Query: 410 GVKGLDPFYFFMNPSPGYVVTFLNKLPHELTCKGGKTSHEVANYIQRLIASTLSYECTNF 231 G K LDP++ FMNP P Y +TFL ++P ELTCKGGK+ EVANYIQR++ TL +ECTNF Sbjct: 419 GYKLLDPYFAFMNPRPTYEITFLKQIPAELTCKGGKSPIEVANYIQRVLGGTLGFECTNF 478 Query: 230 TRKDKYKALAGNDGSVVSK 174 TRKDKY LAG DG V K Sbjct: 479 TRKDKYAMLAGTDGRVPVK 497
>GPAT8_ARATH (Q5XF03) Probable glycerol-3-phosphate acyltransferase 8 (EC| 2.3.1.15) Length = 500 Score = 101 bits (252), Expect = 6e-22 Identities = 49/85 (57%), Positives = 59/85 (69%), Gaps = 1/85 (1%) Frame = -1 Query: 410 GVKGLDPFYFFMNPSPGYVVTFLNKLPHELTCKGG-KTSHEVANYIQRLIASTLSYECTN 234 GVK DP++FFMNP P Y TFL++LP E+T GG KT EVANY+Q++I + L +ECT Sbjct: 416 GVKFWDPYFFFMNPRPSYEATFLDRLPEEMTVNGGGKTPIEVANYVQKVIGAVLGFECTE 475 Query: 233 FTRKDKYKALAGNDGSVVSKPNIDK 159 TRKDKY L GNDG V S N K Sbjct: 476 LTRKDKYLLLGGNDGKVESINNTKK 500
>GPAT4_ARATH (Q9LMM0) Glycerol-3-phosphate acyltransferase 4 (EC 2.3.1.15)| (AtGPAT4) Length = 503 Score = 101 bits (252), Expect = 6e-22 Identities = 51/89 (57%), Positives = 61/89 (68%), Gaps = 1/89 (1%) Frame = -1 Query: 410 GVKGLDPFYFFMNPSPGYVVTFLNKLPHELTCKGG-KTSHEVANYIQRLIASTLSYECTN 234 GVK DP++FFMNP P Y TFL++LP E+T GG KT EVANY+Q++I L +ECT Sbjct: 417 GVKFWDPYFFFMNPRPSYEATFLDRLPEEMTVNGGGKTPFEVANYVQKVIGGVLGFECTE 476 Query: 233 FTRKDKYKALAGNDGSVVSKPNIDKKKFM 147 TRKDKY L GNDG V S I+K K M Sbjct: 477 LTRKDKYLLLGGNDGKVES---INKTKSM 502
>GPAT1_ARATH (Q9SHJ5) Glycerol-3-phosphate acyltransferase 1 (EC 2.3.1.15)| (AtGPAT1) Length = 585 Score = 98.2 bits (243), Expect = 7e-21 Identities = 45/76 (59%), Positives = 55/76 (72%) Frame = -1 Query: 410 GVKGLDPFYFFMNPSPGYVVTFLNKLPHELTCKGGKTSHEVANYIQRLIASTLSYECTNF 231 G+K LDP +F MNP P Y + L KLP E+TC GGK+S EVAN+IQ +A L +ECTN Sbjct: 509 GLKCLDPIFFLMNPRPVYCLEILKKLPKEMTCAGGKSSFEVANFIQGELARVLGFECTNL 568 Query: 230 TRKDKYKALAGNDGSV 183 TR+DKY LAGN+G V Sbjct: 569 TRRDKYLVLAGNEGIV 584
>GPAT2_ARATH (Q9FZ22) Probable glycerol-3-phosphate acyltransferase 2 (EC| 2.3.1.15) (AtGPAT2) Length = 530 Score = 78.6 bits (192), Expect = 5e-15 Identities = 39/85 (45%), Positives = 52/85 (61%), Gaps = 6/85 (7%) Frame = -1 Query: 410 GVKGLDPFYFFMNPSPGYVVTFLNKLP--HELTCKG----GKTSHEVANYIQRLIASTLS 249 G+K DP +F +NP P Y V L+ + TC+G GK + EVAN++Q I + L Sbjct: 446 GLKAFDPIFFLLNPFPSYTVKLLDPVSGSSSSTCRGVPDNGKVNFEVANHVQHEIGNALG 505 Query: 248 YECTNFTRKDKYKALAGNDGSVVSK 174 +ECTN TR+DKY LAGN+G V K Sbjct: 506 FECTNLTRRDKYLILAGNNGVVKKK 530
>GPAT3_ARATH (Q9SYJ2) Probable glycerol-3-phosphate acyltransferase 3 (EC| 2.3.1.15) (AtGPAT3) Length = 520 Score = 72.0 bits (175), Expect = 5e-13 Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 2/78 (2%) Frame = -1 Query: 410 GVKGLDPFYFFMNPSPGYVVTFLNKLPHELTCKG--GKTSHEVANYIQRLIASTLSYECT 237 G+K LDP +F ++P P Y + FL+ + TC+ GK EVAN +Q I L +ECT Sbjct: 441 GLKALDPLFFLLDPYPTYTIQFLDPVSGA-TCQDPDGKLKFEVANNVQSDIGKALDFECT 499 Query: 236 NFTRKDKYKALAGNDGSV 183 + TRKDKY LAGN+G V Sbjct: 500 SLTRKDKYLILAGNNGVV 517
>MSA1_SCHPO (Q10277) Multicopy suppressor of sporulation protein msa1| Length = 533 Score = 29.6 bits (65), Expect = 2.9 Identities = 23/64 (35%), Positives = 33/64 (51%) Frame = +1 Query: 220 SFLVKFVHS*ESVEAMSLWM*LATSWLVLPPLQVSSWGSLLRKVTTYPGLGFMKK*KGSS 399 +FLV+FV+ E++ A + L+ S+W L + TY G KK KGSS Sbjct: 199 AFLVRFVYRDEAIAAYTA-------------LKHSAWPVLWAENVTYQN-GHYKK-KGSS 243 Query: 400 PFTP 411 PF+P Sbjct: 244 PFSP 247
>ATR_DROME (Q9VXG8) Serine/threonine-protein kinase ATR (EC 2.7.11.1) (Ataxia| telangiectasia and Rad3-related protein homolog) (ATR homolog) (dATR) (Meiotic protein 41) Length = 2517 Score = 29.3 bits (64), Expect = 3.7 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 10/98 (10%) Frame = -1 Query: 332 PHELTCKGGKTSHEVANYIQRLIASTLSYECTNFTRKDKYKALAGNDGSVVSKPNIDKKK 153 P E + HE N I +L+ S SY C + R Y +G S+ +++ Sbjct: 1487 PPETIDSNYRKIHEFLNLIPKLLVSRASYNCGEYARALSYLESYLEEGEDKSQRLLEQFT 1546 Query: 152 FM----GS**LNFAKDPQ------KKRNYDTSTVSQIL 69 F+ GS +DP + R+YD S IL Sbjct: 1547 FLVEVYGS-----LRDPDSVEGAVQVRSYDMSVTQDIL 1579
>COE4_MOUSE (Q8K4J2) Transcription factor COE4 (Early B-cell factor 4) (EBF-4)| (Olf-1/EBF-like 4) (OE-4) (O/E-4) Length = 599 Score = 28.9 bits (63), Expect = 4.9 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = -3 Query: 345 PQQAAPRAHLQGRQDQPRGGQLHPETHRLHALLR 244 P QA PRAH +G DQP +T + H+ R Sbjct: 563 PSQACPRAHREGLPDQP-----FEDTDKFHSAAR 591
>SYL_BUCBP (P59433) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 861 Score = 28.5 bits (62), Expect = 6.4 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = -1 Query: 383 FFMNPSPGYVVTFLNKLP-HELTCKGGKTSHEVANYIQRLIASTLSYECTNFT 228 F PS TF+ P HEL+ K + H++ +I+ ++T +Y N T Sbjct: 247 FISKPSTLMGATFITLSPSHELSFKIARKKHKIQEFIENCSSNTNTYNDINNT 299
>YKT6_YEAST (P36015) Synaptobrevin homolog YKT6| Length = 200 Score = 28.5 bits (62), Expect = 6.4 Identities = 18/49 (36%), Positives = 22/49 (44%) Frame = -1 Query: 407 VKGLDPFYFFMNPSPGYVVTFLNKLPHELTCKGGKTSHEVANYIQRLIA 261 VK L F FF S G +TF + T G + S E NYI + A Sbjct: 22 VKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYA 70
>YKT6_CANGA (Q6FW27) Synaptobrevin homolog YKT6| Length = 205 Score = 28.5 bits (62), Expect = 6.4 Identities = 18/49 (36%), Positives = 22/49 (44%) Frame = -1 Query: 407 VKGLDPFYFFMNPSPGYVVTFLNKLPHELTCKGGKTSHEVANYIQRLIA 261 VK L F FF S G +TF + T G + S E NYI + A Sbjct: 27 VKDLSQFGFFERNSVGQFMTFFAETVATRTTAGQRQSVEEGNYIGHVYA 75
>SEN2_HUMAN (Q8NCE0) tRNA-splicing endonuclease subunit Sen2 (EC 3.1.27.9)| (tRNA-intron endonuclease Sen2) (HsSen2 protein) Length = 465 Score = 28.5 bits (62), Expect = 6.4 Identities = 22/67 (32%), Positives = 34/67 (50%) Frame = -1 Query: 254 LSYECTNFTRKDKYKALAGNDGSVVSKPNIDKKKFMGS**LNFAKDPQKKRNYDTSTVSQ 75 LS +FT D K +A + P I K++ S + +A + +++ D STV + Sbjct: 71 LSRSRPSFTISDP-KLVAKWKDMKTNMPIITSKRYQHS--VEWAAELMRRQGQDESTVRR 127 Query: 74 ILKDVTK 54 ILKD TK Sbjct: 128 ILKDYTK 134 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,867,665 Number of Sequences: 219361 Number of extensions: 760882 Number of successful extensions: 2186 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2156 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2182 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
