>SOX21_MOUSE (Q811W0) Transcription factor SOX-21|
          Length = 276

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = -1

Query: 368 SSAAASKPYYILDNLFSDLIDLKSSSAGNKTGTSLGSSNAG 246
           ++AAA  PY +LD L S + ++ SSS+G    +SLG   AG
Sbjct: 162 AAAAAGSPYSLLD-LGSKMAEISSSSSGLPYASSLGYPTAG 201

>SOX21_HUMAN (Q9Y651) Transcription factor SOX-21 (SOX-A)|
          Length = 276

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = -1

Query: 368 SSAAASKPYYILDNLFSDLIDLKSSSAGNKTGTSLGSSNAG 246
           ++AAA  PY +LD L S + ++ SSS+G    +SLG   AG
Sbjct: 162 AAAAAGSPYSLLD-LGSKMAEISSSSSGLPYASSLGYPTAG 201

>YDHF_ECOLI (P76187) Oxidoreductase ydhF (EC 1.-.-.-)|
          Length = 298

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 109 KAIKHIKERMEIYSKCTLNQVATRASNLPHHLLLRE 216
           K   H++ERMEI SKC +   A   + + H++  R+
Sbjct: 69  KLAPHLRERMEIVSKCGIATTAREENVIGHYITDRD 104

>MGSA_ENTFA (Q837A4) Methylglyoxal synthase (EC 4.2.3.3) (MGS)|
          Length = 140

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 43  LIIYVHQQCSTLLYLTEPTKLTKAIKHIKERMEIYSKCTLNQVATRASNLPHH 201
           + +  H +  TL+      KL  A KHI E+ E+Y+  T       A+ LP H
Sbjct: 3   IALIAHDRKKTLMI-----KLATAYKHILEKHELYATGTTGMKVMEATGLPVH 50

>IL6_ORCOR (Q28747) Interleukin-6 precursor (IL-6) (Fragment)|
          Length = 205

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
 Frame = +1

Query: 70  STLLYLTEPTKLTKAIKHI--------KERMEIYSKCTLNQVATRASNL 192
           S  LYLT P K    IK+I        KE  E Y KC  ++ A   +NL
Sbjct: 34  SDRLYLTSPDKTEALIKYILGKISAMRKEMCEKYDKCENSKEALAENNL 82

>LPXK_HAEIN (P44491) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 332

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -2

Query: 184 MLLWLLDSMYICCISPFSLLYV*LLWLISSVR 89
           M  W  +S  I  +SPFSLL+    WLIS +R
Sbjct: 1   MPFWYSNSKLIWLLSPFSLLF----WLISQLR 28

>LPXK_HAEI8 (Q4QPI5) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 332

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -2

Query: 184 MLLWLLDSMYICCISPFSLLYV*LLWLISSVR 89
           M  W  +S  I  +SPFSLL+    WLIS +R
Sbjct: 1   MPFWYSNSKLIWLLSPFSLLF----WLISQLR 28

>APOB_HUMAN (P04114) Apolipoprotein B-100 precursor (Apo B-100) [Contains:|
            Apolipoprotein B-48 (Apo B-48)]
          Length = 4563

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 12/101 (11%)
 Frame = +1

Query: 43   LIIYVHQQCSTLL--YLTEPTKLTKAIKHIKERMEIYSKCTLNQVATRASNLP----HHL 204
            LI Y+  + +T+   Y+    KL K  +++   +  +++   N++   +  L     + +
Sbjct: 4325 LINYIQDEINTIFNDYIPYVFKLLK--ENLCLNLHKFNEFIQNELQEASQELQQIHQYIM 4382

Query: 205  LLRETYFFPPIIGWPA--FELPK----LVPVLFPALELFKS 309
             LRE YF P I+GW    +EL +    L+  L  AL+ F S
Sbjct: 4383 ALREEYFDPSIVGWTVKYYELEEKIVSLIKNLLVALKDFHS 4423

>APOB_CHICK (P11682) Apolipoprotein B (Fragment)|
          Length = 433

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 82  YLTEPTKLTKAIKHIKERMEIYSKCTLNQVATRASNLPHHL-LLRETYFFPPIIGW 246
           Y  +   L + +K    +++ +S+ TL +++     L  ++  LRE YF P  +GW
Sbjct: 138 YAHKLRSLAENVKKYISQIKNFSQKTLQKLSENLQQLVLYIKALREEYFDPTTLGW 193


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,943,107
Number of Sequences: 219361
Number of extensions: 866443
Number of successful extensions: 1986
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1986
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)