Clone Information

BLAST Search Result

Clone Name	rbart58d02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RL3_ORYSA (P35684) 60S ribosomal protein L3	172	2e-43
2	RL3A_ARATH (P17094) 60S ribosomal protein L3	152	2e-37
3	RL3B_ARATH (P22738) 60S ribosomal protein L3	150	5e-37
4	RL3_DROME (O16797) 60S ribosomal protein L3	129	2e-30
5	RL3_TOXCA (P49149) 60S ribosomal protein L3	125	2e-29
6	RL3_CAEEL (P50880) 60S ribosomal protein L3	121	5e-28
7	RL3L_BOVIN (Q3SZ10) 60S ribosomal protein L3-like	118	3e-27
8	RL3_CAEBR (Q9NBK4) 60S ribosomal protein L3	118	4e-27
9	RL3_RAT (P21531) 60S ribosomal protein L3 (L4)	117	5e-27
10	RL3_MOUSE (P27659) 60S ribosomal protein L3 (J1 protein)	117	5e-27
11	RL3_BOVIN (P39872) 60S ribosomal protein L3	117	5e-27
12	RL3_MACFA (Q4R5Q0) 60S ribosomal protein L3	117	7e-27
13	RL3_HUMAN (P39023) 60S ribosomal protein L3 (HIV-1 TAR RNA-bindi...	117	7e-27
14	RL3L_HUMAN (Q92901) 60S ribosomal protein L3-like	116	1e-26
15	RL3_YEAST (P14126) 60S ribosomal protein L3 (YL1) (RP1) (Mainten...	115	3e-26
16	RL3_DICDI (P34113) 60S ribosomal protein L3	114	6e-26
17	RL3_ENCCU (Q8SQI3) 60S ribosomal protein L3	111	4e-25
18	RL3_ASHGO (Q759R7) 60S ribosomal protein L3	110	6e-25
19	RL3B_SCHPO (P36584) 60S ribosomal protein L3-B	109	2e-24
20	RL3A_SCHPO (P40372) 60S ribosomal protein L3-A	109	2e-24
21	RL3_ASPFU (Q8NKF4) 60S ribosomal protein L3 (Allergen Asp f 23)	109	2e-24
22	RL3_KLULA (Q6CJR7) 60S ribosomal protein L3	108	4e-24
23	RL3_CANGA (Q6FTJ2) 60S ribosomal protein L3	108	4e-24
24	RL3_NEUCR (P59671) 60S ribosomal protein L3	104	6e-23
25	RL3_DEBHA (Q6BXM5) 60S ribosomal protein L3	100	6e-22
26	RL3_PYRKO (Q5JDJ0) 50S ribosomal protein L3P	58	6e-09
27	RL3_PYRFU (Q8TZZ8) 50S ribosomal protein L3P	57	8e-09
28	RL3_METJA (P54014) 50S ribosomal protein L3P	57	1e-08
29	RL3_PYRAB (Q9V1T5) 50S ribosomal protein L3P	55	3e-08
30	RL3_PYRHO (O59418) 50S ribosomal protein L3P	55	4e-08
31	RL3_METAC (Q8TRU7) 50S ribosomal protein L3P	52	3e-07
32	RL3_ARCFU (O28354) 50S ribosomal protein L3P	52	3e-07
33	RL3_METMA (Q8PV50) 50S ribosomal protein L3P	52	3e-07
34	RL3_METKA (Q8TY90) 50S ribosomal protein L3P	51	8e-07
35	RL3_METTH (O26110) 50S ribosomal protein L3P	51	8e-07
36	RL3_METVA (Q9UWG2) 50S ribosomal protein L3P	50	1e-06
37	RL3_PYRAE (Q8ZW52) 50S ribosomal protein L3P	50	1e-06
38	RL3_THEAC (Q9HIQ9) 50S ribosomal protein L3P	47	1e-05
39	RL3_THEVO (Q97BX7) 50S ribosomal protein L3P	46	2e-05
40	RL3_HALSA (Q9HPD4) 50S ribosomal protein L3P	44	7e-05
41	RL3_SULTO (Q975I1) 50S ribosomal protein L3P	43	2e-04
42	RL3_SULSO (Q9UXA8) 50S ribosomal protein L3P	43	2e-04
43	RL3_AERPE (Q9YFM2) 50S ribosomal protein L3P	40	0.001
44	RL3_SULAC (Q4JB40) 50S ribosomal protein L3P	39	0.002
45	RUVB_LISMO (Q8Y6Z8) Holliday junction ATP-dependent DNA helicase...	37	0.015
46	RUVB_LISMF (Q71ZD8) Holliday junction ATP-dependent DNA helicase...	37	0.015
47	RUVB_LISIN (Q92BI2) Holliday junction ATP-dependent DNA helicase...	36	0.020
48	RL3_HALMA (P20279) 50S ribosomal protein L3P (Hmal3) (Hl1)	35	0.033
49	RL3_NANEQ (P60458) 50S ribosomal protein L3P	34	0.097
50	RL3_MYCPU (Q98PY0) 50S ribosomal protein L3	31	0.82
51	IPAC_SHIFL (P18012) Invasin ipaC (42 kDa antigen)	31	0.82
52	IPAC_SHIDY (Q03946) Invasin ipaC (42 kDa antigen)	31	0.82
53	HEM3_DESVH (Q72AV0) Porphobilinogen deaminase (EC 2.5.1.61) (PBG...	30	1.1
54	TREA_CANAL (P52494) Neutral trehalase (EC 3.2.1.28) (Alpha,alpha...	30	1.4
55	BPA1_MOUSE (Q91ZU6) Bullous pemphigoid antigen 1, isoforms 1/2/3...	30	1.4
56	RL3_PIG (Q29293) 60S ribosomal protein L3 (Fragment)	30	1.4
57	CHSS2_MOUSE (Q6IQX7) Chondroitin sulfate synthase 2 (EC 2.4.1.17...	30	1.8
58	ICAM5_HUMAN (Q9UMF0) Intercellular adhesion molecule 5 precursor...	30	1.8
59	CYSA_PSEPK (Q88CL2) Sulfate/thiosulfate import ATP-binding prote...	30	1.8
60	CHSS2_HUMAN (Q8IZ52) Chondroitin sulfate synthase 2 (EC 2.4.1.17...	30	1.8
61	VIT2_PERAM (Q9BPS0) Vitellogenin 2 precursor (Vg-2)	29	3.1
62	RUVB_RHOBA (Q7UPG4) Holliday junction ATP-dependent DNA helicase...	28	4.1
63	LHR_ECOLI (P30015) Probable ATP-dependent helicase lhr (EC 3.6.1...	28	4.1
64	YS44_CAEEL (Q09372) Hypothetical protein ZK177.4	28	5.3
65	CI005_HUMAN (Q9H330) Protein C9orf5 (Protein CG-2)	28	5.3
66	EGF_FELCA (Q95ND4) Pro-epidermal growth factor precursor (EGF) [...	28	5.3
67	LEU2_BUCBP (P59519) 3-isopropylmalate dehydratase large subunit ...	28	7.0
68	RUVB_ENTFA (Q839T5) Holliday junction ATP-dependent DNA helicase...	28	7.0
69	VE1_BPV2 (P11298) Replication protein E1 (EC 3.6.1.-) (ATP-depen...	27	9.1
70	CCD93_CHICK (Q5ZKI4) Coiled-coil domain-containing protein 93	27	9.1
71	VNS1_EHDV2 (P27585) Nonstructural protein NS1 (Hydrophobic tubul...	27	9.1
72	S14L4_HUMAN (Q9UDX3) SEC14-like protein 4 (Tocopherol-associated...	27	9.1

>RL3_ORYSA (P35684) 60S ribosomal protein L3|
          Length = 388

 Score =  172 bits (436), Expect = 2e-43
 Identities = 82/85 (96%), Positives = 84/85 (98%)
 Frame = -2

Query: 387 RTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFV 208
           RTEKDITPMGGFPHYGVVK DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKF+
Sbjct: 303 RTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFI 362

Query: 207 DTSSKFGHGRFQTTDEKQRFYGKLK 133
           DTSSKFGHGRFQTTDEKQRF+GKLK
Sbjct: 363 DTSSKFGHGRFQTTDEKQRFFGKLK 387

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>RL3A_ARATH (P17094) 60S ribosomal protein L3|
          Length = 388

 Score =  152 bits (383), Expect = 2e-37
 Identities = 71/84 (84%), Positives = 78/84 (92%)
 Frame = -2

Query: 387 RTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFV 208
           RTEKD+TPMGGFPHYG+VK DYLMIKGCCVGPKKRVVTLRQSLL QTSRLALEEIKLKF+
Sbjct: 303 RTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFI 362

Query: 207 DTSSKFGHGRFQTTDEKQRFYGKL 136
           DT+S FGHGRFQT+ EK RFY ++
Sbjct: 363 DTASIFGHGRFQTSLEKMRFYNRV 386

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>RL3B_ARATH (P22738) 60S ribosomal protein L3|
          Length = 389

 Score =  150 bits (380), Expect = 5e-37
 Identities = 69/83 (83%), Positives = 77/83 (92%)
 Frame = -2

Query: 387 RTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFV 208
           RTEKDITPMGGFPHYG+VK DYLMIKGCCVGPKKRVVTLRQ+LLKQTSRLA+EEIKLKF+
Sbjct: 303 RTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFI 362

Query: 207 DTSSKFGHGRFQTTDEKQRFYGK 139
           D +S  GHGRFQT+ EK +FYG+
Sbjct: 363 DAASNGGHGRFQTSQEKAKFYGR 385

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>RL3_DROME (O16797) 60S ribosomal protein L3|
          Length = 415

 Score =  129 bits (323), Expect = 2e-30
 Identities = 59/84 (70%), Positives = 69/84 (82%)
 Frame = -2

Query: 384 TEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVD 205
           T+K ITPMGGFPHYG V  D++MIKGCC+G KKR++TLR+SLLK T R ALE+IKLKF+D
Sbjct: 309 TDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFID 368

Query: 204 TSSKFGHGRFQTTDEKQRFYGKLK 133
           TSSK GHGRFQT  +K  F G LK
Sbjct: 369 TSSKMGHGRFQTPADKLAFMGPLK 392

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>RL3_TOXCA (P49149) 60S ribosomal protein L3|
          Length = 401

 Score =  125 bits (314), Expect = 2e-29
 Identities = 57/84 (67%), Positives = 69/84 (82%)
 Frame = -2

Query: 384 TEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVD 205
           TEK + PMGGFPHYG+V  D++MI+GCCVG KKR +TLR+SL+ QT R A E+I LK++D
Sbjct: 306 TEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKWID 365

Query: 204 TSSKFGHGRFQTTDEKQRFYGKLK 133
           TSSKFGHGRFQT  EK+ F GKLK
Sbjct: 366 TSSKFGHGRFQTHAEKRAFMGKLK 389

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>RL3_CAEEL (P50880) 60S ribosomal protein L3|
          Length = 401

 Score =  121 bits (303), Expect = 5e-28
 Identities = 55/84 (65%), Positives = 70/84 (83%)
 Frame = -2

Query: 384 TEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVD 205
           T+K ITPMGGFP YG+V  DY+M++G  +GPKKR++TLR+SL+ QT R+A E+I LK++D
Sbjct: 307 TQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWID 366

Query: 204 TSSKFGHGRFQTTDEKQRFYGKLK 133
           TSSK GHGRFQTT EK+ F GKLK
Sbjct: 367 TSSKTGHGRFQTTAEKRAFMGKLK 390

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>RL3L_BOVIN (Q3SZ10) 60S ribosomal protein L3-like|
          Length = 406

 Score =  118 bits (296), Expect = 3e-27
 Identities = 55/84 (65%), Positives = 66/84 (78%)
 Frame = -2

Query: 384 TEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVD 205
           T+K ITP+GGFPHYG V  D++M+KGC  G KKRV+TLR+SLL   SR ALE I+LKF+D
Sbjct: 309 TDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQALENIELKFID 368

Query: 204 TSSKFGHGRFQTTDEKQRFYGKLK 133
           T+SKFGHGRFQT  EK+ F G  K
Sbjct: 369 TTSKFGHGRFQTAQEKRAFMGPQK 392

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>RL3_CAEBR (Q9NBK4) 60S ribosomal protein L3|
          Length = 401

 Score =  118 bits (295), Expect = 4e-27
 Identities = 54/84 (64%), Positives = 69/84 (82%)
 Frame = -2

Query: 384 TEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVD 205
           T+K I PMGGFP YG+V  DY+M++G  +GPKKR++TLR+SL+ QT R+A E+I LK++D
Sbjct: 307 TQKTINPMGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKSLITQTKRVAHEKINLKWID 366

Query: 204 TSSKFGHGRFQTTDEKQRFYGKLK 133
           TSSK GHGRFQTT EK+ F GKLK
Sbjct: 367 TSSKTGHGRFQTTAEKRAFMGKLK 390

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>RL3_RAT (P21531) 60S ribosomal protein L3 (L4)|
          Length = 402

 Score =  117 bits (294), Expect = 5e-27
 Identities = 55/84 (65%), Positives = 68/84 (80%)
 Frame = -2

Query: 384 TEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVD 205
           ++K I P+GGF HYG V  D++M+KGC VG KKRV+TLR+SLL QT R ALE+I LKF+D
Sbjct: 309 SDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFID 368

Query: 204 TSSKFGHGRFQTTDEKQRFYGKLK 133
           T+SKFGHGRFQT +EK+ F G LK
Sbjct: 369 TTSKFGHGRFQTMEEKKAFMGPLK 392

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>RL3_MOUSE (P27659) 60S ribosomal protein L3 (J1 protein)|
          Length = 402

 Score =  117 bits (294), Expect = 5e-27
 Identities = 55/84 (65%), Positives = 68/84 (80%)
 Frame = -2

Query: 384 TEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVD 205
           ++K I P+GGF HYG V  D++M+KGC VG KKRV+TLR+SLL QT R ALE+I LKF+D
Sbjct: 309 SDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFID 368

Query: 204 TSSKFGHGRFQTTDEKQRFYGKLK 133
           T+SKFGHGRFQT +EK+ F G LK
Sbjct: 369 TTSKFGHGRFQTMEEKKAFMGPLK 392

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>RL3_BOVIN (P39872) 60S ribosomal protein L3|
          Length = 402

 Score =  117 bits (294), Expect = 5e-27
 Identities = 55/84 (65%), Positives = 68/84 (80%)
 Frame = -2

Query: 384 TEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVD 205
           ++K I P+GGF HYG V  D++M+KGC VG KKRV+TLR+SLL QT R ALE+I LKF+D
Sbjct: 309 SDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFID 368

Query: 204 TSSKFGHGRFQTTDEKQRFYGKLK 133
           T+SKFGHGRFQT +EK+ F G LK
Sbjct: 369 TTSKFGHGRFQTVEEKKAFMGPLK 392

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>RL3_MACFA (Q4R5Q0) 60S ribosomal protein L3|
          Length = 402

 Score =  117 bits (293), Expect = 7e-27
 Identities = 55/84 (65%), Positives = 68/84 (80%)
 Frame = -2

Query: 384 TEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVD 205
           ++K I P+GGF HYG V  D++M+KGC VG KKRV+TLR+SLL QT R ALE+I LKF+D
Sbjct: 309 SDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFID 368

Query: 204 TSSKFGHGRFQTTDEKQRFYGKLK 133
           T+SKFGHGRFQT +EK+ F G LK
Sbjct: 369 TTSKFGHGRFQTMEEKKAFMGPLK 392

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>RL3_HUMAN (P39023) 60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein B)|
           (TARBP-B)
          Length = 402

 Score =  117 bits (293), Expect = 7e-27
 Identities = 55/84 (65%), Positives = 68/84 (80%)
 Frame = -2

Query: 384 TEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVD 205
           ++K I P+GGF HYG V  D++M+KGC VG KKRV+TLR+SLL QT R ALE+I LKF+D
Sbjct: 309 SDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFID 368

Query: 204 TSSKFGHGRFQTTDEKQRFYGKLK 133
           T+SKFGHGRFQT +EK+ F G LK
Sbjct: 369 TTSKFGHGRFQTMEEKKAFMGPLK 392

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>RL3L_HUMAN (Q92901) 60S ribosomal protein L3-like|
          Length = 406

 Score =  116 bits (290), Expect = 1e-26
 Identities = 54/84 (64%), Positives = 65/84 (77%)
 Frame = -2

Query: 384 TEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVD 205
           T K ITP+GGFPHYG V  D++M+KGC  G KKRV+TLR+SLL   SR A+E I+LKF+D
Sbjct: 309 TAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFID 368

Query: 204 TSSKFGHGRFQTTDEKQRFYGKLK 133
           T+SKFGHGRFQT  EK+ F G  K
Sbjct: 369 TTSKFGHGRFQTAQEKRAFMGPQK 392

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>RL3_YEAST (P14126) 60S ribosomal protein L3 (YL1) (RP1) (Maintenance of|
           killer protein 8) (Trichodermin resistance protein)
          Length = 386

 Score =  115 bits (287), Expect = 3e-26
 Identities = 54/85 (63%), Positives = 66/85 (77%)
 Frame = -2

Query: 387 RTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFV 208
           RT+K ITPMGGF HYG +K D++M+KGC  G +KR+VTLR+SL   TSR ALEE+ LK++
Sbjct: 299 RTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWI 358

Query: 207 DTSSKFGHGRFQTTDEKQRFYGKLK 133
           DT+SKFG GRFQT  EK  F G LK
Sbjct: 359 DTASKFGKGRFQTPAEKHAFMGTLK 383

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>RL3_DICDI (P34113) 60S ribosomal protein L3|
          Length = 397

 Score =  114 bits (285), Expect = 6e-26
 Identities = 51/84 (60%), Positives = 66/84 (78%)
 Frame = -2

Query: 384 TEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVD 205
           TEK I PMGGF HYG+VK ++LM+KGC  GP+KR +TLR+S+  QT R ALE+I LKF+D
Sbjct: 308 TEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKITLKFID 367

Query: 204 TSSKFGHGRFQTTDEKQRFYGKLK 133
           TSSKFGHG  QT ++K +++G  K
Sbjct: 368 TSSKFGHGLHQTAEDKTKYFGVKK 391

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>RL3_ENCCU (Q8SQI3) 60S ribosomal protein L3|
          Length = 383

 Score =  111 bits (278), Expect = 4e-25
 Identities = 55/84 (65%), Positives = 67/84 (79%)
 Frame = -2

Query: 384 TEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVD 205
           TEK I+PMGGFPHYG V+ D++M+KG  VG +KRVVTLR+SLL+Q    A EE+ +KFVD
Sbjct: 295 TEKPISPMGGFPHYGEVRNDFIMVKGAVVGARKRVVTLRKSLLRQR---AGEELVIKFVD 351

Query: 204 TSSKFGHGRFQTTDEKQRFYGKLK 133
           TSSK GHGRFQT+ EK+ FYG  K
Sbjct: 352 TSSKIGHGRFQTSAEKKAFYGARK 375

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>RL3_ASHGO (Q759R7) 60S ribosomal protein L3|
          Length = 388

 Score =  110 bits (276), Expect = 6e-25
 Identities = 54/85 (63%), Positives = 64/85 (75%)
 Frame = -2

Query: 387 RTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFV 208
           RT+K ITPMGGF HYG V  D++M+KG   G +KRVVTLR+SL   TSR ALEE+ LK++
Sbjct: 301 RTKKTITPMGGFVHYGAVNNDFVMVKGSIPGTRKRVVTLRKSLYTSTSRRALEEVNLKWI 360

Query: 207 DTSSKFGHGRFQTTDEKQRFYGKLK 133
           DT+SKFG GRFQT  EK  F G LK
Sbjct: 361 DTASKFGKGRFQTPAEKHAFMGTLK 385

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>RL3B_SCHPO (P36584) 60S ribosomal protein L3-B|
          Length = 387

 Score =  109 bits (272), Expect = 2e-24
 Identities = 53/84 (63%), Positives = 65/84 (77%)
 Frame = -2

Query: 384 TEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVD 205
           TEK ITPMGGF  YGVV+ D++M+ G   GP KRV+TLR+SLL  TSR ALE + LK++D
Sbjct: 300 TEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWID 359

Query: 204 TSSKFGHGRFQTTDEKQRFYGKLK 133
           T+SKFGHGRFQT  E ++F G LK
Sbjct: 360 TASKFGHGRFQTPAEAKQFLGTLK 383

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>RL3A_SCHPO (P40372) 60S ribosomal protein L3-A|
          Length = 387

 Score =  109 bits (272), Expect = 2e-24
 Identities = 53/84 (63%), Positives = 65/84 (77%)
 Frame = -2

Query: 384 TEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVD 205
           TEK ITPMGGF  YGVV+ D++M+ G   GP KRV+TLR+SLL  TSR ALE + LK++D
Sbjct: 300 TEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWID 359

Query: 204 TSSKFGHGRFQTTDEKQRFYGKLK 133
           T+SKFGHGRFQT  E ++F G LK
Sbjct: 360 TASKFGHGRFQTPAEAKQFLGTLK 383

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>RL3_ASPFU (Q8NKF4) 60S ribosomal protein L3 (Allergen Asp f 23)|
          Length = 392

 Score =  109 bits (272), Expect = 2e-24
 Identities = 52/84 (61%), Positives = 66/84 (78%)
 Frame = -2

Query: 384 TEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVD 205
           ++K ITPMGGF  YG VK DY+M+KG   G KKRV+TLR++L  QTSR A E+++LK++D
Sbjct: 302 SKKQITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMTLRKTLYPQTSRRATEKVELKWID 361

Query: 204 TSSKFGHGRFQTTDEKQRFYGKLK 133
           TSSKFGHG FQT +EK+ F G LK
Sbjct: 362 TSSKFGHGAFQTPEEKRAFMGTLK 385

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>RL3_KLULA (Q6CJR7) 60S ribosomal protein L3|
          Length = 387

 Score =  108 bits (269), Expect = 4e-24
 Identities = 52/85 (61%), Positives = 64/85 (75%)
 Frame = -2

Query: 387 RTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFV 208
           RT+K ITPMGGF HYG +  D++++KG   G +KRVVTLR+SL   TSR ALEE+ LK++
Sbjct: 300 RTKKTITPMGGFVHYGAINNDFVILKGSIPGTRKRVVTLRKSLYTNTSRKALEEVTLKWI 359

Query: 207 DTSSKFGHGRFQTTDEKQRFYGKLK 133
           DT+SKFG GRFQT  EK  F G LK
Sbjct: 360 DTASKFGKGRFQTPAEKHAFLGTLK 384

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>RL3_CANGA (Q6FTJ2) 60S ribosomal protein L3|
          Length = 387

 Score =  108 bits (269), Expect = 4e-24
 Identities = 53/85 (62%), Positives = 64/85 (75%)
 Frame = -2

Query: 387 RTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFV 208
           RT+K I PMGGF HYG+V  D++M+KG   G KKRVVTLR+SL   TSR A+EE+ LK++
Sbjct: 300 RTKKTINPMGGFVHYGMVNNDFVMVKGSIPGCKKRVVTLRKSLYTNTSRKAVEEVTLKWI 359

Query: 207 DTSSKFGHGRFQTTDEKQRFYGKLK 133
           DT+SKFG GRFQT  EK  F G LK
Sbjct: 360 DTASKFGKGRFQTPAEKHAFMGTLK 384

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>RL3_NEUCR (P59671) 60S ribosomal protein L3|
          Length = 392

 Score =  104 bits (259), Expect = 6e-23
 Identities = 49/84 (58%), Positives = 65/84 (77%)
 Frame = -2

Query: 384 TEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVD 205
           T+K ITPMGGF  YG +  D++M+KG   G KKRV+TLR+S+   TSR ALE+++LK++D
Sbjct: 302 TKKKITPMGGFVRYGEINNDFVMVKGSVPGVKKRVMTLRKSMFVHTSRKALEKVELKWID 361

Query: 204 TSSKFGHGRFQTTDEKQRFYGKLK 133
           TSS+FGHG FQT  EK++F G LK
Sbjct: 362 TSSEFGHGAFQTPAEKKQFQGTLK 385

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>RL3_DEBHA (Q6BXM5) 60S ribosomal protein L3|
          Length = 389

 Score =  100 bits (250), Expect = 6e-22
 Identities = 49/85 (57%), Positives = 61/85 (71%)
 Frame = -2

Query: 387 RTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFV 208
           RT+K I PMGGF  YG VK D++++KG   G KKR+VT+R+SL   TSR A E + LK++
Sbjct: 300 RTKKTINPMGGFVRYGNVKNDFMLLKGSIPGVKKRIVTIRKSLYVDTSRRATENVNLKWI 359

Query: 207 DTSSKFGHGRFQTTDEKQRFYGKLK 133
           DT+SKFG GRFQT  EK  F G LK
Sbjct: 360 DTASKFGKGRFQTPAEKHAFLGTLK 384

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>RL3_PYRKO (Q5JDJ0) 50S ribosomal protein L3P|
          Length = 346

 Score = 57.8 bits (138), Expect = 6e-09
 Identities = 25/63 (39%), Positives = 41/63 (65%)
 Frame = -2

Query: 381 EKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDT 202
           E +ITP GGFPHYG+V++D+LMI+G   G  KR++ +R ++     +  +E  ++ +V  
Sbjct: 283 EIEITPKGGFPHYGIVRSDFLMIEGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYVSR 342

Query: 201 SSK 193
            SK
Sbjct: 343 ESK 345

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>RL3_PYRFU (Q8TZZ8) 50S ribosomal protein L3P|
          Length = 365

 Score = 57.4 bits (137), Expect = 8e-09
 Identities = 24/64 (37%), Positives = 41/64 (64%)
 Frame = -2

Query: 384 TEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVD 205
           TE +ITP GGFPHYG+V++D++MI G   G  KR++ +R ++     +  ++  ++ +V 
Sbjct: 301 TEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVS 360

Query: 204 TSSK 193
             SK
Sbjct: 361 VESK 364

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>RL3_METJA (P54014) 50S ribosomal protein L3P|
          Length = 335

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 26/63 (41%), Positives = 43/63 (68%)
 Frame = -2

Query: 375 DITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSS 196
           +ITP GGF HYGV++ +Y+++KG   GP KR++ LR+++  Q   + + EI   ++ T+S
Sbjct: 274 EITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIRPQEPLIKVPEI--TYISTTS 331

Query: 195 KFG 187
           K G
Sbjct: 332 KQG 334

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>RL3_PYRAB (Q9V1T5) 50S ribosomal protein L3P|
          Length = 361

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 23/63 (36%), Positives = 40/63 (63%)
 Frame = -2

Query: 381 EKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDT 202
           E +ITP GGFPHYG+V++D++MI G   G  KR++ +R ++     +  ++  ++ +V  
Sbjct: 298 EIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSV 357

Query: 201 SSK 193
            SK
Sbjct: 358 ESK 360

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>RL3_PYRHO (O59418) 50S ribosomal protein L3P|
          Length = 362

 Score = 55.1 bits (131), Expect = 4e-08
 Identities = 23/63 (36%), Positives = 39/63 (61%)
 Frame = -2

Query: 381 EKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDT 202
           E +ITP GGFPHYG+V+ D++MI G   G  KR++ +R ++     +  ++  ++ +V  
Sbjct: 299 EIEITPKGGFPHYGIVRGDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSV 358

Query: 201 SSK 193
            SK
Sbjct: 359 ESK 361

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>RL3_METAC (Q8TRU7) 50S ribosomal protein L3P|
          Length = 337

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 24/64 (37%), Positives = 40/64 (62%)
 Frame = -2

Query: 378 KDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTS 199
           +++TP GGF +YG+V+ DY++IKG   GP KR++ LR  +  +  +  L E  + ++   
Sbjct: 276 EEVTPEGGFINYGLVRGDYILIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRE 333

Query: 198 SKFG 187
           SK G
Sbjct: 334 SKQG 337

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>RL3_ARCFU (O28354) 50S ribosomal protein L3P|
          Length = 331

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 22/64 (34%), Positives = 41/64 (64%)
 Frame = -2

Query: 378 KDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTS 199
           ++ITP GGF HYGV++  Y+++ G   GP KR++ +R ++  +  +   + + + +V T+
Sbjct: 269 EEITPKGGFLHYGVIRTQYVLVTGSVPGPVKRLIRMRDAI--RPPKAHFDGVNIVYVSTT 326

Query: 198 SKFG 187
           SK G
Sbjct: 327 SKQG 330

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>RL3_METMA (Q8PV50) 50S ribosomal protein L3P|
          Length = 337

 Score = 52.0 bits (123), Expect = 3e-07
 Identities = 24/64 (37%), Positives = 40/64 (62%)
 Frame = -2

Query: 378 KDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTS 199
           +++TP GGF +YG+V+ DY++IKG   GP KR++ LR  +  +  +  L E  + ++   
Sbjct: 276 EEVTPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRE 333

Query: 198 SKFG 187
           SK G
Sbjct: 334 SKQG 337

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>RL3_METKA (Q8TY90) 50S ribosomal protein L3P|
          Length = 361

 Score = 50.8 bits (120), Expect = 8e-07
 Identities = 20/40 (50%), Positives = 31/40 (77%)
 Frame = -2

Query: 378 KDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSL 259
           +++TP GGF +YGVV+ DY+MI G   GPKKR++ +R ++
Sbjct: 279 EEVTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAV 318

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>RL3_METTH (O26110) 50S ribosomal protein L3P|
          Length = 337

 Score = 50.8 bits (120), Expect = 8e-07
 Identities = 25/62 (40%), Positives = 40/62 (64%)
 Frame = -2

Query: 372 ITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSK 193
           + P GGF  YG+V+ DY+MIKG   GP KR+V LR+++  + +    E  ++ ++ T+SK
Sbjct: 277 VNPDGGFVRYGLVRNDYVMIKGSVPGPTKRLVVLRKAI--RAAGKQEEAPQINYISTASK 334

Query: 192 FG 187
            G
Sbjct: 335 QG 336

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>RL3_METVA (Q9UWG2) 50S ribosomal protein L3P|
          Length = 334

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 25/64 (39%), Positives = 38/64 (59%)
 Frame = -2

Query: 375 DITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSS 196
           +ITP GGF +YG VK  Y+++KG   GP KR+V LR ++     +  L E+   ++   S
Sbjct: 273 EITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPEV--TYISKES 330

Query: 195 KFGH 184
           K G+
Sbjct: 331 KQGN 334

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>RL3_PYRAE (Q8ZW52) 50S ribosomal protein L3P|
          Length = 338

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 21/36 (58%), Positives = 27/36 (75%)
 Frame = -2

Query: 375 DITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLR 268
           +ITP  GFPHYGVVK  Y++I+G   G +KR+V LR
Sbjct: 278 EITPKSGFPHYGVVKGPYILIQGSVPGARKRLVVLR 313

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>RL3_THEAC (Q9HIQ9) 50S ribosomal protein L3P|
          Length = 331

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 23/62 (37%), Positives = 36/62 (58%)
 Frame = -2

Query: 372 ITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSK 193
           I   GGF HYG VK DY+++ G   G  KR++ +R    ++     +EE+KL+++   SK
Sbjct: 271 INVRGGFLHYGFVKNDYVLLFGSIPGASKRLIKMRDPARQKVP--DIEEVKLEYISLESK 328

Query: 192 FG 187
            G
Sbjct: 329 QG 330

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>RL3_THEVO (Q97BX7) 50S ribosomal protein L3P|
          Length = 331

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 22/62 (35%), Positives = 36/62 (58%)
 Frame = -2

Query: 372 ITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSK 193
           I   GGF HYG+VK DY+++ G   GP KR++ +R    ++     ++ +KL ++   SK
Sbjct: 271 INVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRDPARQKVP--DIDNVKLDYISLESK 328

Query: 192 FG 187
            G
Sbjct: 329 QG 330

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>RL3_HALSA (Q9HPD4) 50S ribosomal protein L3P|
          Length = 334

 Score = 44.3 bits (103), Expect = 7e-05
 Identities = 23/61 (37%), Positives = 35/61 (57%)
 Frame = -2

Query: 369 TPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKF 190
           TP GGFP+YG V   Y ++KG   GP++R+V  R ++    S     E+  ++V T+S  
Sbjct: 276 TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRLDPEV--RYVSTASNQ 333

Query: 189 G 187
           G
Sbjct: 334 G 334

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>RL3_SULTO (Q975I1) 50S ribosomal protein L3P|
          Length = 343

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 23/63 (36%), Positives = 38/63 (60%)
 Frame = -2

Query: 375 DITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSS 196
           +I P GGF +YG+V+  YL+I+G  +G KKR + LR  +  + S +     K+ +V+  S
Sbjct: 283 EINPKGGFVNYGIVRNTYLIIEGSIIGAKKRPLFLRYPI--RPSWIPQSAPKITYVNLYS 340

Query: 195 KFG 187
           + G
Sbjct: 341 QQG 343

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>RL3_SULSO (Q9UXA8) 50S ribosomal protein L3P|
          Length = 351

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 17/38 (44%), Positives = 27/38 (71%)
 Frame = -2

Query: 378 KDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQ 265
           K+I P GGF  YG+V+  Y++++G  +G KKR + LR+
Sbjct: 290 KEINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLRE 327

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>RL3_AERPE (Q9YFM2) 50S ribosomal protein L3P|
          Length = 344

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
 Frame = -2

Query: 372 ITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLL--KQTSRLALEEIKLKFVDTS 199
           +TP GGF  YGVV++ ++M+ G   G  KR + +R ++   +   +L + + ++ ++  +
Sbjct: 280 VTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMRWAIRPPEWYLKLGVRKPEITYISLA 339

Query: 198 SKFG 187
           SK G
Sbjct: 340 SKQG 343

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>RL3_SULAC (Q4JB40) 50S ribosomal protein L3P|
          Length = 342

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 22/63 (34%), Positives = 37/63 (58%)
 Frame = -2

Query: 375 DITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFVDTSS 196
           +I P GG  +YG+VK  YL+I+G  +G +KR + LR  +    S  +    K+ +V+ +S
Sbjct: 282 EINPAGGIVNYGLVKNTYLVIEGSVLGSRKRPLFLRYPIRPSWSPESAP--KITYVNLAS 339

Query: 195 KFG 187
           + G
Sbjct: 340 QQG 342

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>RUVB_LISMO (Q8Y6Z8) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 335

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
 Frame = +1

Query: 76  VSHVRF---DKMTQLILRSSSSLELAIEPLLLVGGLETA-----VPKLGRGVDKLELDFL 231
           + H+ F   +++T+++LR+S+ L+  I+ L   G  E A      P++   + K   DF 
Sbjct: 177 IDHLEFYTEEQLTEIVLRTSNILDTKIDDL---GAREIARRSRGTPRIANRLLKRVRDFA 233

Query: 232 QCETRGLLQQGLAEGHHTLLWPNTASLDHQVVGLHHTIVREATHG 366
           Q    G + + LA+   TLL  +   LD     L HTI++    G
Sbjct: 234 QVRGNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGG 278

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>RUVB_LISMF (Q71ZD8) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 335

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
 Frame = +1

Query: 76  VSHVRF---DKMTQLILRSSSSLELAIEPLLLVGGLETA-----VPKLGRGVDKLELDFL 231
           + H+ F   +++T+++LR+S+ L+  I+ L   G  E A      P++   + K   DF 
Sbjct: 177 IDHLEFYTEEQLTEIVLRTSNILDTKIDDL---GAREIARRSRGTPRIANRLLKRVRDFA 233

Query: 232 QCETRGLLQQGLAEGHHTLLWPNTASLDHQVVGLHHTIVREATHG 366
           Q    G + + LA+   TLL  +   LD     L HTI++    G
Sbjct: 234 QVRGNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGG 278

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>RUVB_LISIN (Q92BI2) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 335

 Score = 36.2 bits (82), Expect = 0.020
 Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
 Frame = +1

Query: 76  VSHVRF---DKMTQLILRSSSSLELAIEPLLLVGGLETA-----VPKLGRGVDKLELDFL 231
           + H+ F   +++T+++LR+S  L+  I+ L   G  E A      P++   + K   DF 
Sbjct: 177 IDHLEFYTEEQLTEIVLRTSGILDTKIDDL---GAREIARRSRGTPRIANRLLKRVRDFA 233

Query: 232 QCETRGLLQQGLAEGHHTLLWPNTASLDHQVVGLHHTIVREATHG 366
           Q    G + + LA+   TLL  +   LD     L HTI++    G
Sbjct: 234 QVRGNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFRGG 278

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>RL3_HALMA (P20279) 50S ribosomal protein L3P (Hmal3) (Hl1)|
          Length = 337

 Score = 35.4 bits (80), Expect = 0.033
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -2

Query: 360 GGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSL 259
           GGF +YG V   Y ++KG   GP KR+V  R ++
Sbjct: 282 GGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAV 315

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>RL3_NANEQ (P60458) 50S ribosomal protein L3P|
          Length = 321

 Score = 33.9 bits (76), Expect = 0.097
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = -2

Query: 360 GGFPHYGVVKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIK 220
           GG+  YG V    +++KG   GP+KR++ LR+++     +  +E I+
Sbjct: 267 GGWVRYGQVIGPTILLKGSVPGPRKRLIILREAIRPPRKQEKVEGIE 313

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>RL3_MYCPU (Q98PY0) 50S ribosomal protein L3|
          Length = 266

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -2

Query: 336 VKADYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFV 208
           VK + L++KG   GPKK  V +++   K  S+ A++ + L+ V
Sbjct: 182 VKNNILLVKGAVPGPKKGFVVIKECAKKIPSKEAVKLVDLEIV 224

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>IPAC_SHIFL (P18012) Invasin ipaC (42 kDa antigen)|
          Length = 363

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 121 SSSSLELAIEPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 270
           SS+++ L I   +L+  L TA  KLG  +  +  D  +     +++QGLA
Sbjct: 103 SSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLA 152

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>IPAC_SHIDY (Q03946) Invasin ipaC (42 kDa antigen)|
          Length = 363

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 121 SSSSLELAIEPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 270
           SS+++ L I   +L+  L TA  KLG  +  +  D  +     +++QGLA
Sbjct: 103 SSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLA 152

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>HEM3_DESVH (Q72AV0) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)|
           (Hydroxymethylbilane synthase) (HMBS)
           (Pre-uroporphyrinogen synthase)
          Length = 315

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +1

Query: 115 LRSSSSLELAIEPLL----LVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLAEGHH 282
           LR  S L LA+ P L    L G ++T + KL  G    E D +   T GL + GLA  HH
Sbjct: 129 LRRQSQL-LALRPDLDIISLRGNVDTRLRKLMDG----EFDAIVMATAGLKRLGLAAPHH 183

Query: 283 TLLWP 297
            +L P
Sbjct: 184 EVLAP 188

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>TREA_CANAL (P52494) Neutral trehalase (EC 3.2.1.28) (Alpha,alpha-trehalase)|
           (Alpha,alpha-trehalose glucohydrolase)
          Length = 907

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 349 SLWCGEGRLPDDQGMLCWAKEACGDPP 269
           ++WC   RL D  G+ C+  E  G PP
Sbjct: 549 TIWCAHPRLDDKTGLSCYHPEGKGIPP 575

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>BPA1_MOUSE (Q91ZU6) Bullous pemphigoid antigen 1, isoforms 1/2/3/4 (BPA)|
            (Hemidesmosomal plaque protein) (Dystonia musculorum
            protein) (Dystonin)
          Length = 7389

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/55 (32%), Positives = 33/55 (60%)
 Frame = +1

Query: 88   RFDKMTQLILRSSSSLELAIEPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGL 252
            R+  +T+L    + +LE A++   L G L++   +L   +DK+E++ L  ET+GL
Sbjct: 5516 RYKDITKLSADVAKTLEHALQ---LAGQLQSMHKELCNWLDKVEVELLSYETQGL 5567

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>RL3_PIG (Q29293) 60S ribosomal protein L3 (Fragment)|
          Length = 130

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 384 TEKDITPMGGFPHYGVVKADYLMI 313
           ++K I P+G F HYG V  D++M+
Sbjct: 107 SDKSINPLGRFVHYGEVTNDFVML 130

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>CHSS2_MOUSE (Q6IQX7) Chondroitin sulfate synthase 2 (EC 2.4.1.175)|
           (Glucuronosyl-N-acetylgalactosaminyl-proteoglycan
           4-beta-N-acetylgalactosaminyltransferase II)
           (N-acetylgalactosaminyl-proteoglycan
           3-beta-glucuronosyltransferase II) (EC 2.4.1.226) (Chon
          Length = 774

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 298 WAKEACGDPPPVPAEADLSSRTGGNQAQ 215
           W +E CG  PP P +++L  R   N A+
Sbjct: 33  WVEEPCGPGPPQPGDSELPPRGNTNAAR 60

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>ICAM5_HUMAN (Q9UMF0) Intercellular adhesion molecule 5 precursor (ICAM-5)|
           (Telencephalin)
          Length = 924

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/66 (24%), Positives = 26/66 (39%)
 Frame = +1

Query: 175 ETAVPKLGRGVDKLELDFLQCETRGLLQQGLAEGHHTLLWPNTASLDHQVVGLHHTIVRE 354
           E+  P     ++  E   L C  RG    G+      + WP    +  +  G +H +   
Sbjct: 670 ESTCPSHQTWLEGAEASALACAARGRPSPGVRCSREGIPWPEQQRVSREDAGTYHCVATN 729

Query: 355 ATHGSD 372
           A HG+D
Sbjct: 730 A-HGTD 734

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>CYSA_PSEPK (Q88CL2) Sulfate/thiosulfate import ATP-binding protein cysA (EC|
           3.6.3.25) (Sulfate-transporting ATPase)
          Length = 329

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +1

Query: 130 SLELAIEPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLAEGHHTLLWPNTAS 309
           ++E+A   +++  G+   +   G   D+   DF+        +  L+EGHH L  P+  S
Sbjct: 200 AMEVADRIVVMNKGVIEQIGSPGEVYDQPANDFVYHFLGDSNRLALSEGHHVLFRPHEVS 259

Query: 310 LD-HQVVGLHHTIVRE 354
           L  H+  G H   VR+
Sbjct: 260 LSRHETEGHHAAEVRD 275

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>CHSS2_HUMAN (Q8IZ52) Chondroitin sulfate synthase 2 (EC 2.4.1.175)|
           (Glucuronosyl-N-acetylgalactosaminyl-proteoglycan
           4-beta-N-acetylgalactosaminyltransferase II)
           (N-acetylgalactosaminyl-proteoglycan
           3-beta-glucuronosyltransferase II) (EC 2.4.1.226) (Chon
          Length = 775

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 298 WAKEACGDPPPVPAEADLSSRTGGNQAQ 215
           W +E CG  PP P +++L  R   N A+
Sbjct: 33  WVEEPCGPGPPQPGDSELPPRGNTNAAR 60

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>VIT2_PERAM (Q9BPS0) Vitellogenin 2 precursor (Vg-2)|
          Length = 1876

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
 Frame = -2

Query: 333  KADYLMIKGCCVGPKKRVVTLRQSL-LKQTSRLALEEIKLKFVDTSSK----FGHGRFQT 169
            K  Y  ++     P+  V+  R++L    TS++  E   + F DT  K    +  G+F+ 
Sbjct: 1309 KHQYAHVRVNVTMPQVPVIDYRKALEFDPTSKIQCE---VHFGDTPEKKSKVYFQGKFER 1365

Query: 168  TDEKQRFYGKLKXXXXAQYQLCHFVKTNM*YLV 70
            TDE+++F  +         QLC   + N  YL+
Sbjct: 1366 TDERKKFVAE-----SDMAQLCSAQQNNKNYLL 1393

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>RUVB_RHOBA (Q7UPG4) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 366

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/87 (19%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +1

Query: 97  KMTQLILRSSSSLELAIEPLL--LVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 270
           ++ +++LR+S  L + ++P    ++     + P+L         D+ Q +T+G ++  + 
Sbjct: 216 ELAEIVLRNSKKLNIEVDPTSAGVIADRSRSTPRLANNRLLWVRDYAQSKTKGNVEASVC 275

Query: 271 EGHHTLLWPNTASLDHQVVGLHHTIVR 351
           E    ++  +   LD Q      T++R
Sbjct: 276 EAALDMIGIDHLGLDKQDRNYLDTLMR 302

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>LHR_ECOLI (P30015) Probable ATP-dependent helicase lhr (EC 3.6.1.-) (Large|
            helicase-related protein)
          Length = 1538

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 346  LWCGEGRLPDDQGMLCWAKEACGDPPPVPAEADLSSRTGGNQAQV 212
            +W G+ +L +D G++    +        PAEAD ++R+   QA V
Sbjct: 1183 IWSGQKKLGEDDGLVALHLQEYAAESFTPAEADQANRSALQQAIV 1227



 Score = 27.7 bits (60), Expect = 7.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 226 FLQCETRGLLQQGLAEGHHTLLW 294
           F +C  R LL  G   GH T LW
Sbjct: 780 FRECAARALLMPGRTPGHRTPLW 802

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>YS44_CAEEL (Q09372) Hypothetical protein ZK177.4|
          Length = 655

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 182 AVSRPPTRSRGSMASSRLELLRNISCVILSKRTCD 78
           +VS+PP +S GS+      L    +CVI  K +C+
Sbjct: 444 SVSQPPMKSTGSLEQQLAALKPLAACVISEKVSCE 478

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>CI005_HUMAN (Q9H330) Protein C9orf5 (Protein CG-2)|
          Length = 911

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 148 LWQAQGLSCCAISVVSFCQNEHVIPCYF 65
           LW  QGL C AI ++ F    H++P YF
Sbjct: 766 LWLTQGLGCKAILLLIF----HLLPTYF 789

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>EGF_FELCA (Q95ND4) Pro-epidermal growth factor precursor (EGF) [Contains:|
           Epidermal growth factor]
          Length = 1210

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 340 CGEGRLPDDQGMLCWAKEACGDPPPVPAEADLSSR 236
           C EG +    G +C A      PP V +EADLS++
Sbjct: 764 CREGFVKAPDGKMCLALNGHQIPPAVGSEADLSNQ 798

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>LEU2_BUCBP (P59519) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 471

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = -3

Query: 152 GSMASSRLELLRNISCVILSKRTCDT 75
           GS  +SR+E LR ++ ++++KR C++
Sbjct: 345 GSCTNSRIEDLRAVAKIVMNKRVCNS 370

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>RUVB_ENTFA (Q839T5) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 338

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
 Frame = +1

Query: 76  VSHVRF---DKMTQLILRSSSSLELAI--EPLLLVGGLETAVPKLGRGVDKLELDFLQCE 240
           +SH+ +     + +++LRS+   +  I  E    +       P++   + K   DF Q +
Sbjct: 178 ISHMEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQ 237

Query: 241 TRGLLQQGLAEGHHTLLWPNTASLDH 318
           + G + + +A+   TLL  +   LD+
Sbjct: 238 SDGKIDRAIADKALTLLQVDHQGLDY 263

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>VE1_BPV2 (P11298) Replication protein E1 (EC 3.6.1.-) (ATP-dependent|
           helicase E1)
          Length = 604

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -1

Query: 373 HHSHGWLPSLWCGEGRLPDDQGMLCW 296
           H SH WL SL      L DD    CW
Sbjct: 459 HKSHFWLASLADARAALVDDATHACW 484

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>CCD93_CHICK (Q5ZKI4) Coiled-coil domain-containing protein 93|
          Length = 617

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = -2

Query: 291 KKRVVTLRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKL 136
           +++V +L + +L++T    LEE++ KFVD  +K    + +T  E + +  KL
Sbjct: 317 RRKVASLNKQILQKTK--LLEELQAKFVDLQAKCTEAK-KTLTEVESYSEKL 365

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>VNS1_EHDV2 (P27585) Nonstructural protein NS1 (Hydrophobic tubular protein)|
          Length = 552

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 162 RRWSGNGRAQTWKRCRQT 215
           RRW GNGR QT  + R T
Sbjct: 279 RRWEGNGRPQTLVQMRHT 296

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>S14L4_HUMAN (Q9UDX3) SEC14-like protein 4 (Tocopherol-associated protein 3)|
          Length = 406

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +2

Query: 188 PNLEEVSTNL--SLISSSARREVCFSRD-WRRVTTRFFGPTQHPL 313
           P L  V+ NL  S +S   RR++    D W++  T+F  P Q P+
Sbjct: 195 PKLFPVAFNLVKSFMSEETRRKIVILGDNWKQELTKFISPDQLPV 239


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,551,776
Number of Sequences: 219361
Number of extensions: 1212424
Number of successful extensions: 3447
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 3344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3443
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result