ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart58c12 |
|---|---|
| Clone Library Name | barley_pub |
>YTXM_BACSU (P23974) Putative esterase ytxM (EC 3.1.-.-)| Length = 274 Score = 32.7 bits (73), Expect = 0.22 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%) Frame = -2 Query: 335 ILLLWGHNDNIF---NIELAKTMKEQLGEKTMLESIDKAGHLVHLERPCVYNQHLMEFL 168 +LL+ G D F N E+ K + + +E + KAGH VH+E+P ++ + + EFL Sbjct: 218 VLLICGEWDEKFCAINQEVHKMLPS-----SRIEIVPKAGHTVHVEQPRLFGKIVSEFL 271
>FOXM1_RAT (P97691) Forkhead box protein M1 (Winged helix factor from INS-1| cells) (INS-1 winged helix) Length = 759 Score = 31.2 bits (69), Expect = 0.63 Identities = 20/64 (31%), Positives = 30/64 (46%) Frame = -2 Query: 215 HLERPCVYNQHLMEFLAYATAEASKE**IY*QMNHSAECIICAQRIGGPFYWSLNDCLTV 36 HL+ PC+ L +T + E I + + A + C Q GGPF + + L V Sbjct: 548 HLQPPCLDEPELFFSEDSSTFRPAME--ILAESSEPAPQLSCPQEEGGPFKTPIKETLPV 605 Query: 35 SNTP 24 S+TP Sbjct: 606 SSTP 609
>YFAS_ECOLI (P76464) Hypothetical UPF0192 protein yfaS precursor| Length = 1534 Score = 30.8 bits (68), Expect = 0.83 Identities = 11/22 (50%), Positives = 18/22 (81%) Frame = +3 Query: 315 VSPEQKYFLRQDGDGGVFVADH 380 +SPE+ Y L +D +GGVFV+++ Sbjct: 312 ISPERSYILGKDAEGGVFVSEN 333
>YFAS_ECO57 (Q8XE35) Hypothetical UPF0192 protein yfaS precursor| Length = 1534 Score = 30.8 bits (68), Expect = 0.83 Identities = 11/22 (50%), Positives = 18/22 (81%) Frame = +3 Query: 315 VSPEQKYFLRQDGDGGVFVADH 380 +SPE+ Y L +D +GGVFV+++ Sbjct: 312 ISPERSYILGKDAEGGVFVSEN 333
>ECM18_YEAST (Q04623) Extracellular matrix protein 18| Length = 453 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 6/68 (8%) Frame = -2 Query: 341 QKILLLWGHND------NIFNIELAKTMKEQLGEKTMLESIDKAGHLVHLERPCVYNQHL 180 +K+L+++G D +F ++ +K L + LE I +GH + L+ P +NQ + Sbjct: 384 KKLLIVYGQYDWMNKKAGMFMVKELNNLKNCLEGASYLE-IPSSGHNLFLDNPESFNQSI 442 Query: 179 MEFLAYAT 156 + FL+ T Sbjct: 443 VSFLSDET 450
>FOXM1_HUMAN (Q08050) Forkhead box protein M1 (Forkhead-related protein FKHL16)| (Hepatocyte nuclear factor 3 forkhead homolog 11) (HNF-3/fork-head homolog 11) (HFH-11) (Winged helix factor from INS-1 cells) (M-phase phosphoprotein 2) (MPM-2 reactive phosp Length = 763 Score = 29.3 bits (64), Expect = 2.4 Identities = 18/64 (28%), Positives = 30/64 (46%) Frame = -2 Query: 215 HLERPCVYNQHLMEFLAYATAEASKE**IY*QMNHSAECIICAQRIGGPFYWSLNDCLTV 36 HL PCV L+ +T+ + E + A + +Q +GGPF + + L + Sbjct: 549 HLLPPCVDEPELLFSEGPSTSRWAAELPFPADSSDPASQLSYSQEVGGPFKTPIKETLPI 608 Query: 35 SNTP 24 S+TP Sbjct: 609 SSTP 612
>TODF_PSEPU (P23133) 2-hydroxy-6-oxo-2,4-heptadienoate hydrolase (EC 3.1.1.-)| (HOHH) Length = 276 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/71 (23%), Positives = 37/71 (52%) Frame = -2 Query: 377 VSNKDATVPVLPQKILLLWGHNDNIFNIELAKTMKEQLGEKTMLESIDKAGHLVHLERPC 198 +++ D + + + L+L G +D + +E + + QL E + L + GH V +E+ Sbjct: 204 LASSDQDIRDIRHETLILHGRDDRVIPLETSLRLN-QLIEPSQLHVFGRCGHWVQIEQNR 262 Query: 197 VYNQHLMEFLA 165 + + + +FLA Sbjct: 263 GFIRLVNDFLA 273
>FOXM1_MOUSE (O08696) Forkhead box protein M1 (Forkhead homolog 16)| (Winged-helix transcription factor Trident) Length = 760 Score = 28.9 bits (63), Expect = 3.2 Identities = 19/64 (29%), Positives = 30/64 (46%) Frame = -2 Query: 215 HLERPCVYNQHLMEFLAYATAEASKE**IY*QMNHSAECIICAQRIGGPFYWSLNDCLTV 36 HL+ PC+ L +T + E + + + A + C Q GGPF + + L V Sbjct: 548 HLQPPCLDEPDLFFPEDSSTFRPAVE--LLAESSEPAPHLSCPQEEGGPFKTPIKETLPV 605 Query: 35 SNTP 24 S+TP Sbjct: 606 SSTP 609
>KAD_HAEDU (Q7VMY0) Adenylate kinase (EC 2.7.4.3) (ATP-AMP transphosphorylase)| Length = 215 Score = 28.5 bits (62), Expect = 4.1 Identities = 19/55 (34%), Positives = 27/55 (49%) Frame = -2 Query: 305 IFNIELAKTMKEQLGEKTMLESIDKAGHLVHLERPCVYNQHLMEFLAYATAEASK 141 I+N + GE+ + + DKA + LER VY+Q +AY AEA K Sbjct: 136 IYNPPKVAGQDDITGEELITRADDKAETV--LERLAVYHQQTKPLIAYYIAEAEK 188
>Y193_HAEIN (Q57427) Putative esterase/lipase HI0193 (EC 3.1.-.-)| Length = 287 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/55 (30%), Positives = 28/55 (50%) Frame = -2 Query: 332 LLLWGHNDNIFNIELAKTMKEQLGEKTMLESIDKAGHLVHLERPCVYNQHLMEFL 168 L + G N + IE ++ + EQ T +I+ +GH VH E+P + + FL Sbjct: 231 LFIKGGNSSYIKIENSEKILEQFPNATAF-TINGSGHWVHAEKPDFVIRAIKRFL 284
>METK_ARATH (P23686) S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine| adenosyltransferase 1) (AdoMet synthetase 1) Length = 393 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/55 (25%), Positives = 29/55 (52%) Frame = -2 Query: 374 SNKDATVPVLPQKILLLWGHNDNIFNIELAKTMKEQLGEKTMLESIDKAGHLVHL 210 ++K A VP+ +L+ H++ + N E+A+ +KE + + + E + HL Sbjct: 178 NDKGAMVPIRVHTVLISTQHDETVTNDEIARDLKEHVIKPVIPEKYLDEKTIFHL 232
>HSLU_LEGPL (Q5WYQ8) ATP-dependent hsl protease ATP-binding subunit hslU| Length = 441 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = -2 Query: 323 WGHNDNIFNIELAK--TMKEQLGEKTMLESIDKAGHLVHLERPCV 195 W N+ NI + T+ E+L E E+ DKAG VH+++ V Sbjct: 379 WQVNERTENIGARRLYTVMERLLEVVSFEATDKAGETVHVDKAYV 423
>HSLU_LEGPH (Q5ZXU0) ATP-dependent hsl protease ATP-binding subunit hslU| Length = 441 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = -2 Query: 323 WGHNDNIFNIELAK--TMKEQLGEKTMLESIDKAGHLVHLERPCV 195 W N+ NI + T+ E+L E E+ DKAG VH+++ V Sbjct: 379 WQVNERTENIGARRLYTVMERLLEVVSFEATDKAGETVHVDKAYV 423
>HSLU_LEGPA (Q5X7B0) ATP-dependent hsl protease ATP-binding subunit hslU| Length = 441 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = -2 Query: 323 WGHNDNIFNIELAK--TMKEQLGEKTMLESIDKAGHLVHLERPCV 195 W N+ NI + T+ E+L E E+ DKAG VH+++ V Sbjct: 379 WQVNERTENIGARRLYTVMERLLEVVSFEATDKAGETVHVDKAYV 423
>Y4489_PSEAE (Q9HVT2) Hypothetical UPF0192 protein PA4489 precursor| Length = 1516 Score = 28.1 bits (61), Expect = 5.4 Identities = 10/21 (47%), Positives = 17/21 (80%) Frame = +3 Query: 318 SPEQKYFLRQDGDGGVFVADH 380 SPE+ Y + +D +GGVFV+++ Sbjct: 301 SPERSYVIGEDREGGVFVSEN 321
>METK_PEA (P49612) S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine| adenosyltransferase 1) (AdoMet synthetase 1) (Fragment) Length = 366 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/55 (25%), Positives = 29/55 (52%) Frame = -2 Query: 374 SNKDATVPVLPQKILLLWGHNDNIFNIELAKTMKEQLGEKTMLESIDKAGHLVHL 210 ++K A VP+ +L+ H++ + N E+A +KE + + + E + + HL Sbjct: 153 NDKGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDSKTICHL 207
>ESL2_MYCGE (Q49418) Putative esterase/lipase 2 (EC 3.1.-.-)| Length = 268 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/55 (25%), Positives = 27/55 (49%) Frame = -2 Query: 332 LLLWGHNDNIFNIELAKTMKEQLGEKTMLESIDKAGHLVHLERPCVYNQHLMEFL 168 L++ G ND + + + +K + + ID GH H P ++ +++EFL Sbjct: 206 LVILGANDIVTPTKASVDYLANKSDKIIFKVIDGVGHSPHDSAPKLFFDYVLEFL 260
>METL_PEA (P49613) S-adenosylmethionine synthetase 2 (EC 2.5.1.6) (Methionine| adenosyltransferase 2) (AdoMet synthetase 2) Length = 374 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/55 (25%), Positives = 28/55 (50%) Frame = -2 Query: 374 SNKDATVPVLPQKILLLWGHNDNIFNIELAKTMKEQLGEKTMLESIDKAGHLVHL 210 ++K A VP+ +L+ H++ + N E+A +KE + + + E + HL Sbjct: 180 NDKGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHL 234
>PAL2_ORYSA (P53443) Phenylalanine ammonia-lyase (EC 4.3.1.5)| Length = 710 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -2 Query: 260 EKTMLESIDKAGHLVHLERPCVYNQHLMEFLAYATAE 150 EK +L+ ID+ G + + PC +N LM+ L E Sbjct: 559 EKDLLKEIDREGVFAYGDDPCSHNYPLMKKLRNVLVE 595
>SYQ_YERPE (Q8ZDD9) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 555 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Frame = +2 Query: 32 WTRSNNHSNSNKRDPQFSVHKL-YTLRNDSSANRFITPLKLQPWRMPGTP*GAGCKRRAS 208 W N + + R +FS L YT+ + N+ +T ++ W P P +G +RR Sbjct: 243 WVLDNISIDCHPRQYEFSRLNLEYTIMSKRKLNQLVTEKVVEGWDDPRMPTISGLRRRGY 302 Query: 209 PGA 217 A Sbjct: 303 TAA 305
>POL1_CNSV (Q8QVV0) RNA1 polyprotein (P1) [Contains: P1A protein (1A) (Protease| cofactor); Putative ATP-dependent helicase (EC 3.6.1.-) (NTP-binding protein) (NTB) (1B) (Membrane-binding protein); Viral genome-linked protein (1C-VPg); Picornain 3C-like pr Length = 2336 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -2 Query: 122 QMNHSAECIICAQRIGGPFYWSLNDCLTVSNTPL 21 Q++ + +C++ A GPFY D L VS TPL Sbjct: 2074 QVHFTRQCLVVA----GPFYKPTPDQLLVSTTPL 2103
>GLK_NEIMB (P64254) Glucokinase (EC 2.7.1.2) (Glucose kinase)| Length = 328 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 313 LCPQSRSIFCGKTGTVASLLLTT 381 LC Q+ IFC GTVAS L T Sbjct: 237 LCRQTLDIFCAMLGTVASNLALT 259
>GLK_NEIMA (P64253) Glucokinase (EC 2.7.1.2) (Glucose kinase)| Length = 328 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 313 LCPQSRSIFCGKTGTVASLLLTT 381 LC Q+ IFC GTVAS L T Sbjct: 237 LCRQTLDIFCAMLGTVASNLALT 259
>METK_LYCES (P43280) S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine| adenosyltransferase 1) (AdoMet synthetase 1) Length = 393 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/55 (23%), Positives = 28/55 (50%) Frame = -2 Query: 374 SNKDATVPVLPQKILLLWGHNDNIFNIELAKTMKEQLGEKTMLESIDKAGHLVHL 210 ++ A VP+ +L+ H++ + N E+A+ +KE + + + E + HL Sbjct: 178 NDNGAMVPIRVHTVLISTQHDETVTNDEIARDLKEHVIKPVIPEKYLDENTIFHL 232 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,934,680 Number of Sequences: 219361 Number of extensions: 975860 Number of successful extensions: 3160 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3099 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3160 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
