ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart58c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SPTN2_HUMAN (O15020) Spectrin beta chain, brain 2 (Spectrin, non... 29 2.5
2MOBD_BPT4 (P39241) Probable mobile endonuclease D 29 3.3
3TEX10_HUMAN (Q9NXF1) Testis expressed sequence 10 protein 29 3.3
4VNUC_MABVM (P27588) Nucleoprotein (Nucleocapsid protein) 28 7.3
5VNUC_MABVP (P35263) Nucleoprotein (Nucleocapsid protein) 28 7.3
6TEX10_PONPY (Q5RDK1) Testis expressed sequence 10 protein 27 9.5
7MTH14_DROME (Q8SYV9) Probable G-protein coupled receptor Mth-lik... 27 9.5

>SPTN2_HUMAN (O15020) Spectrin beta chain, brain 2 (Spectrin, non-erythroid beta|
           chain 2) (Beta-III spectrin)
          Length = 2390

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +3

Query: 57  KLIAQVLSTERLIHKYHRTKDEITHKRTWYEPSQILLTLHYIRAKISNIISDLESSSRPR 236
           K++   +  ERL+ KY     E+     W E + + L    +   +S + + L+S +  R
Sbjct: 295 KVLDHAMEAERLVEKYESLASELLQ---WIEQTIVTLNDRQLANSLSGVQNQLQSFNSYR 351

Query: 237 KAEK 248
             EK
Sbjct: 352 TVEK 355



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>MOBD_BPT4 (P39241) Probable mobile endonuclease D|
          Length = 259

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = +3

Query: 75  LSTERLIHKYHRTKDEITHKRTWYEPSQILLTLHYIRAKISNIISDLESSSRPRKAEK 248
           L  E+    +  T  E+     + E   I L+L  IRAKIS   S LE+ ++P   EK
Sbjct: 100 LVREKFSKIHSNTMKEMWKSNEYREKRSITLSLPEIRAKISE--SQLEAQNKPEVKEK 155



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>TEX10_HUMAN (Q9NXF1) Testis expressed sequence 10 protein|
          Length = 929

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
 Frame = +3

Query: 18  LIFPTGNQLV-SP*KLIAQVLSTERLIHKYHRTKDEITHKRTWYEPSQILLTLHYIRAKI 194
           L  P GN +   P +++ QVL+   L+ K  + +DE     +W   + ++   H+  ++ 
Sbjct: 340 LATPVGNGIEREPLQVMQQVLNIISLLWKLSKQQDETHKLESWLRKNYLIDFKHHFMSRF 399

Query: 195 SNIISDLESSSR--PRKAEK 248
             ++ ++    R  P K+ K
Sbjct: 400 PYVLKEITKHKRKEPNKSIK 419



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>VNUC_MABVM (P27588) Nucleoprotein (Nucleocapsid protein)|
          Length = 692

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +3

Query: 63  IAQVLSTERLIHKYHRTKDEITHKRTWYEPSQILLTLHYIRAKISNIISDLESS 224
           IA+     +++ ++H  K EITH       SQ L  L   R K++ + +++E++
Sbjct: 348 IAEDDEERKILEQFHLQKTEITH-------SQTLAVLSQKREKLARLAAEIENN 394



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>VNUC_MABVP (P35263) Nucleoprotein (Nucleocapsid protein)|
          Length = 695

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +3

Query: 63  IAQVLSTERLIHKYHRTKDEITHKRTWYEPSQILLTLHYIRAKISNIISDLESS 224
           IA+     +++ ++H  K EITH       SQ L  L   R K++ + +++E++
Sbjct: 348 IAEDDEERKILEQFHLQKTEITH-------SQTLAVLSQKREKLARLAAEIENN 394



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>TEX10_PONPY (Q5RDK1) Testis expressed sequence 10 protein|
          Length = 929

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +3

Query: 18  LIFPTGNQLV-SP*KLIAQVLSTERLIHKYHRTKDEITHKRTWYEPSQILLTLHYIRAKI 194
           L  P GN +   P +++ QVL+   L+ K  + +DE     +W   + ++   H+  ++ 
Sbjct: 340 LATPVGNGIEREPLQVMQQVLNIISLLWKLSKQQDETHKLESWLRKNYLIDFKHHFMSRF 399

Query: 195 SNIISDLESSSR--PRKAEK 248
              + ++    R  P K+ K
Sbjct: 400 PYALKEITKHKRKEPNKSIK 419



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>MTH14_DROME (Q8SYV9) Probable G-protein coupled receptor Mth-like 14 precursor|
           (Protein methuselah-like 14)
          Length = 533

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 145 YHVRLCVISSFVLWYLCINLSVL 77
           Y ++ C++S F  WYLCI  +VL
Sbjct: 308 YVIQFCILSYF-FWYLCICFNVL 329


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,980,542
Number of Sequences: 219361
Number of extensions: 851344
Number of successful extensions: 1585
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1585
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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