Clone Name | rbart58c11 |
---|---|
Clone Library Name | barley_pub |
>SPTN2_HUMAN (O15020) Spectrin beta chain, brain 2 (Spectrin, non-erythroid beta| chain 2) (Beta-III spectrin) Length = 2390 Score = 29.3 bits (64), Expect = 2.5 Identities = 16/64 (25%), Positives = 29/64 (45%) Frame = +3 Query: 57 KLIAQVLSTERLIHKYHRTKDEITHKRTWYEPSQILLTLHYIRAKISNIISDLESSSRPR 236 K++ + ERL+ KY E+ W E + + L + +S + + L+S + R Sbjct: 295 KVLDHAMEAERLVEKYESLASELLQ---WIEQTIVTLNDRQLANSLSGVQNQLQSFNSYR 351 Query: 237 KAEK 248 EK Sbjct: 352 TVEK 355
>MOBD_BPT4 (P39241) Probable mobile endonuclease D| Length = 259 Score = 28.9 bits (63), Expect = 3.3 Identities = 20/58 (34%), Positives = 28/58 (48%) Frame = +3 Query: 75 LSTERLIHKYHRTKDEITHKRTWYEPSQILLTLHYIRAKISNIISDLESSSRPRKAEK 248 L E+ + T E+ + E I L+L IRAKIS S LE+ ++P EK Sbjct: 100 LVREKFSKIHSNTMKEMWKSNEYREKRSITLSLPEIRAKISE--SQLEAQNKPEVKEK 155
>TEX10_HUMAN (Q9NXF1) Testis expressed sequence 10 protein| Length = 929 Score = 28.9 bits (63), Expect = 3.3 Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 3/80 (3%) Frame = +3 Query: 18 LIFPTGNQLV-SP*KLIAQVLSTERLIHKYHRTKDEITHKRTWYEPSQILLTLHYIRAKI 194 L P GN + P +++ QVL+ L+ K + +DE +W + ++ H+ ++ Sbjct: 340 LATPVGNGIEREPLQVMQQVLNIISLLWKLSKQQDETHKLESWLRKNYLIDFKHHFMSRF 399 Query: 195 SNIISDLESSSR--PRKAEK 248 ++ ++ R P K+ K Sbjct: 400 PYVLKEITKHKRKEPNKSIK 419
>VNUC_MABVM (P27588) Nucleoprotein (Nucleocapsid protein)| Length = 692 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/54 (27%), Positives = 29/54 (53%) Frame = +3 Query: 63 IAQVLSTERLIHKYHRTKDEITHKRTWYEPSQILLTLHYIRAKISNIISDLESS 224 IA+ +++ ++H K EITH SQ L L R K++ + +++E++ Sbjct: 348 IAEDDEERKILEQFHLQKTEITH-------SQTLAVLSQKREKLARLAAEIENN 394
>VNUC_MABVP (P35263) Nucleoprotein (Nucleocapsid protein)| Length = 695 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/54 (27%), Positives = 29/54 (53%) Frame = +3 Query: 63 IAQVLSTERLIHKYHRTKDEITHKRTWYEPSQILLTLHYIRAKISNIISDLESS 224 IA+ +++ ++H K EITH SQ L L R K++ + +++E++ Sbjct: 348 IAEDDEERKILEQFHLQKTEITH-------SQTLAVLSQKREKLARLAAEIENN 394
>TEX10_PONPY (Q5RDK1) Testis expressed sequence 10 protein| Length = 929 Score = 27.3 bits (59), Expect = 9.5 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 3/80 (3%) Frame = +3 Query: 18 LIFPTGNQLV-SP*KLIAQVLSTERLIHKYHRTKDEITHKRTWYEPSQILLTLHYIRAKI 194 L P GN + P +++ QVL+ L+ K + +DE +W + ++ H+ ++ Sbjct: 340 LATPVGNGIEREPLQVMQQVLNIISLLWKLSKQQDETHKLESWLRKNYLIDFKHHFMSRF 399 Query: 195 SNIISDLESSSR--PRKAEK 248 + ++ R P K+ K Sbjct: 400 PYALKEITKHKRKEPNKSIK 419
>MTH14_DROME (Q8SYV9) Probable G-protein coupled receptor Mth-like 14 precursor| (Protein methuselah-like 14) Length = 533 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = -3 Query: 145 YHVRLCVISSFVLWYLCINLSVL 77 Y ++ C++S F WYLCI +VL Sbjct: 308 YVIQFCILSYF-FWYLCICFNVL 329 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,980,542 Number of Sequences: 219361 Number of extensions: 851344 Number of successful extensions: 1585 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 1565 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1585 length of database: 80,573,946 effective HSP length: 92 effective length of database: 60,392,734 effective search space used: 1449425616 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)