ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart58c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL731584.3|OSJN00224 Oryza sativa genomic DNA, chromosome 4,... 78 2e-11
2tpg|BK001566.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 78 2e-11
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
4dbj|AK103788.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 2e-11
5dbj|AK101129.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 2e-11
6ref|XM_472718.1| Oryza sativa (japonica cultivar-group), predic... 76 8e-11
7gb|AY596573.1| Saccharum officinarum clone SCCCLR1C01D11, comple... 64 3e-07
8gb|AY107167.1| Zea mays PCO149856 mRNA sequence 46 0.075
9gb|AY596560.1| Saccharum officinarum clone SCUTLR1037C12, comple... 44 0.30
10ref|NM_127793.3| Arabidopsis thaliana unknown protein AT2G22270 ... 42 1.2
11gb|AC103551.7| Oryza sativa chromosome 3 BAC OSJNBb0058G04 genom... 42 1.2
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.2
13gb|AC125527.3| Mus musculus BAC clone RP24-550H17 from chromosom... 42 1.2
14gb|AC153656.4| Mus musculus BAC clone RP23-428O19 from chromosom... 42 1.2
15emb|AL355980.6| Human DNA sequence from clone RP11-295L12 on chr... 42 1.2
16gb|AC007168.5| Arabidopsis thaliana chromosome 2 clone T26C19 ma... 42 1.2
17dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
18gb|AC156807.2| Pan troglodytes BAC clone CH251-353P10 from chrom... 42 1.2
19gb|AY089019.1| Arabidopsis thaliana clone 17172 mRNA, complete s... 42 1.2
20dbj|AK101680.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
21dbj|AK068724.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
22dbj|AK060532.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
23emb|AL109767.7|CNS018OX Human chromosome 14 DNA sequence BAC R-8... 42 1.2
24emb|AL132819.6|CNS01DTO Human chromosome 14 DNA sequence BAC C-2... 42 1.2 
>emb|AL731584.3|OSJN00224 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006M15,
              complete sequence
          Length = 143109

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                             
Query: 305    attagatgagtgcaatgctgctctcgccaccagggggcttccggaca 351
              ||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 107376 attagatcagtgcaatgctgctctcgccaccagggggcttgcggaca 107422



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                           
Query: 152    gagtcagatcctgctgactctacactatattagggctaagatatc 196
              ||||||||| |||||||||||| |  |||| ||||| ||||||||
Sbjct: 107227 gagtcagattctgctgactctagatgatatcagggccaagatatc 107271



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 86     gagattaatacataagtacca 106
              |||||||||||||||||||||
Sbjct: 107165 gagattaatacataagtacca 107185
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>tpg|BK001566.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) HN1-like protein
            isoform 1 mRNA, complete cds
          Length = 1262

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 45/47 (95%)
 Strand = Plus / Minus

                                                           
Query: 305  attagatgagtgcaatgctgctctcgccaccagggggcttccggaca 351
            ||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 1016 attagatcagtgcaatgctgctctcgccaccagggggcttgcggaca 970



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 86   gagattaatacataagtacca 106
            |||||||||||||||||||||
Sbjct: 1227 gagattaatacataagtacca 1207



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 152  gagtcagatcctgctgactctacactatattagggctaagatatc 196
            ||||||||| |||||||||||| |  |||| ||||| ||||||||
Sbjct: 1165 gagtcagattctgctgactctagatgatatcagggccaagatatc 1121
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                               
Query: 305      attagatgagtgcaatgctgctctcgccaccagggggcttccggaca 351
                ||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 22770180 attagatcagtgcaatgctgctctcgccaccagggggcttgcggaca 22770226



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                             
Query: 152      gagtcagatcctgctgactctacactatattagggctaagatatc 196
                ||||||||| |||||||||||| |  |||| ||||| ||||||||
Sbjct: 22770031 gagtcagattctgctgactctagatgatatcagggccaagatatc 22770075



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 86       gagattaatacataagtacca 106
                |||||||||||||||||||||
Sbjct: 22769969 gagattaatacataagtacca 22769989
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>dbj|AK103788.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145I18, full
            insert sequence
          Length = 1373

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 45/47 (95%)
 Strand = Plus / Minus

                                                           
Query: 305  attagatgagtgcaatgctgctctcgccaccagggggcttccggaca 351
            ||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 1016 attagatcagtgcaatgctgctctcgccaccagggggcttgcggaca 970



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 86   gagattaatacataagtacca 106
            |||||||||||||||||||||
Sbjct: 1227 gagattaatacataagtacca 1207



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 152  gagtcagatcctgctgactctacactatattagggctaagatatc 196
            ||||||||| |||||||||||| |  |||| ||||| ||||||||
Sbjct: 1165 gagtcagattctgctgactctagatgatatcagggccaagatatc 1121
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>dbj|AK101129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025P19, full
            insert sequence
          Length = 1262

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 45/47 (95%)
 Strand = Plus / Minus

                                                           
Query: 305  attagatgagtgcaatgctgctctcgccaccagggggcttccggaca 351
            ||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 1016 attagatcagtgcaatgctgctctcgccaccagggggcttgcggaca 970



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 86   gagattaatacataagtacca 106
            |||||||||||||||||||||
Sbjct: 1227 gagattaatacataagtacca 1207



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 152  gagtcagatcctgctgactctacactatattagggctaagatatc 196
            ||||||||| |||||||||||| |  |||| ||||| ||||||||
Sbjct: 1165 gagtcagattctgctgactctagatgatatcagggccaagatatc 1121
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>ref|XM_472718.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 918

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 44/46 (95%)
 Strand = Plus / Minus

                                                         
Query: 306 ttagatgagtgcaatgctgctctcgccaccagggggcttccggaca 351
           |||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 918 ttagatcagtgcaatgctgctctcgccaccagggggcttgcggaca 873
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>gb|AY596573.1| Saccharum officinarum clone SCCCLR1C01D11, complete sequence
          Length = 1372

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 65/76 (85%)
 Strand = Plus / Minus

                                                                        
Query: 274  tagccagtcccgactagagcagtctaccataattagatgagtgcaatgctgctctcgcca 333
            ||||||||||  |||| ||||||| |  | ||| |||| || || |||||||||||||||
Sbjct: 1085 tagccagtccgaactaaagcagtccagaacaatcagatcagagcgatgctgctctcgcca 1026

                            
Query: 334  ccagggggcttccgga 349
            ||||||||||||||||
Sbjct: 1025 ccagggggcttccgga 1010



 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 149  accgagtcagatcctgctgactctacactatattag 184
            |||||||||||| |||||||||||||| ||||||||
Sbjct: 1220 accgagtcagattctgctgactctacattatattag 1185
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>gb|AY107167.1| Zea mays PCO149856 mRNA sequence
          Length = 1497

 Score = 46.1 bits (23), Expect = 0.075
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 319  atgctgctctcgccaccagggggcttccgga 349
            ||||||||||| || ||||||||||||||||
Sbjct: 1023 atgctgctctcaccgccagggggcttccgga 993
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>gb|AY596560.1| Saccharum officinarum clone SCUTLR1037C12, complete sequence
          Length = 1314

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 316  gcaatgctgctctcgccaccagggggcttccgga 349
            |||||||||||||| |||||||| ||||| ||||
Sbjct: 1058 gcaatgctgctctccccaccaggcggcttgcgga 1025
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>ref|NM_127793.3| Arabidopsis thaliana unknown protein AT2G22270 mRNA, complete cds
          Length = 1243

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 318  aatgctgctctcgccaccagg 338
            |||||||||||||||||||||
Sbjct: 1046 aatgctgctctcgccaccagg 1026
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>gb|AC103551.7| Oryza sativa chromosome 3 BAC OSJNBb0058G04 genomic sequence, complete
             sequence
          Length = 137709

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 316   gcaatgctgctctcgccaccagggggctt 344
             ||||||||||||||||| ||||| |||||
Sbjct: 36439 gcaatgctgctctcgccgccaggaggctt 36467
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 316      gcaatgctgctctcgccaccagggggctt 344
                ||||||||||||||||| ||||| |||||
Sbjct: 15300909 gcaatgctgctctcgccgccaggaggctt 15300881
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>gb|AC125527.3| Mus musculus BAC clone RP24-550H17 from chromosome 1, complete sequence
          Length = 153191

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 95    acataagtaccacagaacaaa 115
             |||||||||||||||||||||
Sbjct: 71787 acataagtaccacagaacaaa 71767
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>gb|AC153656.4| Mus musculus BAC clone RP23-428O19 from chromosome 1, complete sequence
          Length = 196584

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 95     acataagtaccacagaacaaa 115
              |||||||||||||||||||||
Sbjct: 183636 acataagtaccacagaacaaa 183616
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>emb|AL355980.6| Human DNA sequence from clone RP11-295L12 on chromosome 13, complete
             sequence
          Length = 191856

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 181   ttagggctaagatatccaaca 201
             |||||||||||||||||||||
Sbjct: 15425 ttagggctaagatatccaaca 15405
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>gb|AC007168.5| Arabidopsis thaliana chromosome 2 clone T26C19 map mi238, complete
             sequence
          Length = 81236

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 318   aatgctgctctcgccaccagg 338
             |||||||||||||||||||||
Sbjct: 27772 aatgctgctctcgccaccagg 27792
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 316      gcaatgctgctctcgccaccagggggctt 344
                ||||||||||||||||| ||||| |||||
Sbjct: 15295443 gcaatgctgctctcgccgccaggaggctt 15295415
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>gb|AC156807.2| Pan troglodytes BAC clone CH251-353P10 from chromosome unknown, complete
              sequence
          Length = 172466

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 322    ctgctctcgccaccagggggc 342
              |||||||||||||||||||||
Sbjct: 164660 ctgctctcgccaccagggggc 164680
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>gb|AY089019.1| Arabidopsis thaliana clone 17172 mRNA, complete sequence
          Length = 1226

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 318  aatgctgctctcgccaccagg 338
            |||||||||||||||||||||
Sbjct: 1033 aatgctgctctcgccaccagg 1013
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>dbj|AK101680.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058I20, full
           insert sequence
          Length = 1135

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 316 gcaatgctgctctcgccaccagggggctt 344
           ||||||||||||||||| ||||| |||||
Sbjct: 902 gcaatgctgctctcgccgccaggaggctt 874
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>dbj|AK068724.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013161E13, full
           insert sequence
          Length = 1181

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 316 gcaatgctgctctcgccaccagggggctt 344
           ||||||||||||||||| ||||| |||||
Sbjct: 904 gcaatgctgctctcgccgccaggaggctt 876
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>dbj|AK060532.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-A03, full
           insert sequence
          Length = 1307

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 316 gcaatgctgctctcgccaccagggggctt 344
           ||||||||||||||||| ||||| |||||
Sbjct: 923 gcaatgctgctctcgccgccaggaggctt 895
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>emb|AL109767.7|CNS018OX Human chromosome 14 DNA sequence BAC R-889B13 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 184039

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 322   ctgctctcgccaccagggggc 342
             |||||||||||||||||||||
Sbjct: 98956 ctgctctcgccaccagggggc 98936
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>emb|AL132819.6|CNS01DTO Human chromosome 14 DNA sequence BAC C-2200A16 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 140073

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 322    ctgctctcgccaccagggggc 342
              |||||||||||||||||||||
Sbjct: 123885 ctgctctcgccaccagggggc 123865


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,438,950
Number of Sequences: 3902068
Number of extensions: 2438950
Number of successful extensions: 36386
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36301
Number of HSP's gapped (non-prelim): 85
length of query: 351
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 329
effective length of database: 17,147,199,772
effective search space: 5641428724988
effective search space used: 5641428724988
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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