Clone Name | rbart58c05 |
---|---|
Clone Library Name | barley_pub |
>dbj|AB086416.1| Hordeum vulgare mRNA for O-methyltransferase, complete cds Length = 1372 Score = 280 bits (141), Expect = 3e-72 Identities = 213/237 (89%) Strand = Plus / Minus Query: 171 ctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccggt 230 ||||||||||||||||||||||||||||| || | |||||| ||||||||||||| || Sbjct: 1154 ctacttggtgtactccattgcccagaagttcgcaaagatgtagctggccttgacgcctgt 1095 Query: 231 aaacccggcagccctggcgagcttctcgaggtccctcaggtacctttccttgccgccggg 290 |||||| |||||| |||| |||||||||| |||||| |||| |||||||||||||||||| Sbjct: 1094 aaaccctgcagccttggctagcttctcgaagtccctgaggttcctttccttgccgccggg 1035 Query: 291 gctgtacgccagcaggctcacgtccacgctgattaacccctgcgtgctgtttgtggcgtc 350 |||||||||||||| ||| ||||||| | |||||||||||||| | ||||||| ||||| Sbjct: 1034 gctgtacgccagcaagctggcgtccacacagattaacccctgcgcgttgtttgtcgcgtc 975 Query: 351 cgggttcaccggcaggatacactccacgttgatcaccttaccatgcgccggcagtgc 407 ||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct: 974 cgggttcactggcaggatacattccacgttgatcaccttaccatgcgcgggcagtgc 918
>gb|AF033539.1|AF033539 Lolium perenne caffeic acid O-methyltransferase (OMT2) mRNA, complete cds Length = 1436 Score = 168 bits (85), Expect = 9e-39 Identities = 181/213 (84%) Strand = Plus / Minus Query: 171 ctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccggt 230 |||||| ||||||||||| ||||||||||||||| | |||||||||||| |||||| ||| Sbjct: 1130 ctacttagtgtactccatggcccagaagtcggcgaagatgtaggtggccgtgacgctggt 1071 Query: 231 aaacccggcagccctggcgagcttctcgaggtccctcaggtacctttccttgccgccggg 290 ||| ||||| || ||||||||||||| |||||||| ||||||| ||||||||||| || Sbjct: 1070 aaagccggcgcccttggcgagcttctccaggtccctgtggtacctctccttgccgcccgg 1011 Query: 291 gctgtacgccagcaggctcacgtccacgctgattaacccctgcgtgctgtttgtggcgtc 350 ||||||| | |||||||||| || ||| ||| ||| |||||| | ||| |||||||| Sbjct: 1010 gctgtacacaagcaggctcaaatcgacggcgatcaacgcctgcgcaccgttggtggcgtc 951 Query: 351 cgggttcaccggcaggatacactccacgttgat 383 ||| |||||||||| ||| ||||| |||||||| Sbjct: 950 cggattcaccggcaagatgcactcgacgttgat 918
>gb|AF153825.1|AF153825 Festuca arundinacea comt1c caffeic acid O-methyltransferase mRNA, complete cds Length = 1438 Score = 75.8 bits (38), Expect = 1e-10 Identities = 185/234 (79%) Strand = Plus / Minus Query: 171 ctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccggt 230 |||||||||| |||| || ||||| || |||||| ||||| |||| |||||||||||| Sbjct: 1144 ctacttggtgaactcgatggcccacgcgttggcgtagatgtacgtggacttgacgccggt 1085 Query: 231 aaacccggcagccctggcgagcttctcgaggtccctcaggtacctttccttgccgccggg 290 || ||||| ||||||||||| ||||| ||||| |||||| ||| |||||||||| Sbjct: 1084 gaagccggctcccctggcgagcgcctcgaactccctttcgtacctctccctgccgccggg 1025 Query: 291 gctgtacgccagcaggctcacgtccacgctgattaacccctgcgtgctgtttgtggcgtc 350 | ||| ||| |||| | ||| ||| ||| || | |||||||| |||| |||| || Sbjct: 1024 gttgtgcgcgagcatgatcatgtcgacgtggaacaccccctgcgagctgggcttggcctc 965 Query: 351 cgggttcaccggcaggatacactccacgttgatcaccttaccatgcgccggcag 404 |||||||||||||||||| ||||| ||| | |||||| || ||||||||||| Sbjct: 964 cgggttcaccggcaggatgcactcgacgagcaccaccttgccgtgcgccggcag 911
>ref|XM_480185.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1425 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 171 ctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccggt 230 |||||||||| |||| || |||||| || |||||| |||||||||||||||| |||||| Sbjct: 1189 ctacttggtgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaagccggt 1130 Query: 231 aaacccggcagccctggcgagcttctcgaggtccctcaggtacctttccttgccgccggg 290 || ||||| || | |||||||| | || |||||| |||||| |||||||||||||| Sbjct: 1129 gaatccggcggcgcgggcgagctccctgaactccctctcgtacctctccttgccgccggg 1070 Query: 291 g 291 | Sbjct: 1069 g 1069
>dbj|AK061859.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G09, full insert sequence Length = 1227 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 171 ctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccggt 230 |||||||||| |||| || |||||| || |||||| |||||||||||||||| |||||| Sbjct: 987 ctacttggtgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaagccggt 928 Query: 231 aaacccggcagccctggcgagcttctcgaggtccctcaggtacctttccttgccgccggg 290 || ||||| || | |||||||| | || |||||| |||||| |||||||||||||| Sbjct: 927 gaatccggcggcgcgggcgagctccctgaactccctctcgtacctctccttgccgccggg 868 Query: 291 g 291 | Sbjct: 867 g 867
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Plus Query: 171 ctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccggt 230 |||||||||| |||| || |||||| || |||||| |||||||||||||||| |||||| Sbjct: 3331696 ctacttggtgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaagccggt 3331755 Query: 231 aaacccggcagccctggcgagcttctcgaggtccctcaggtacctttccttgccgccggg 290 || ||||| || | |||||||| | || |||||| |||||| |||||||||||||| Sbjct: 3331756 gaatccggcggcgcgggcgagctccctgaactccctctcgtacctctccttgccgccggg 3331815 Query: 291 g 291 | Sbjct: 3331816 g 3331816
>gb|DQ288259.1| Oryza sativa (japonica cultivar-group) O-methyltransferase (ROMT-9) mRNA, complete cds Length = 1190 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Minus Query: 171 ctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccggt 230 |||||||||| |||| || |||||| || |||||| |||||||||||||||| |||||| Sbjct: 1121 ctacttggtgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaagccggt 1062 Query: 231 aaacccggcagccctggcgagcttctcgaggtccctcaggtacctttccttgccgccggg 290 || ||||| || | |||||||| | || |||||| |||||| |||||||||||||| Sbjct: 1061 gaatccggcggcgcgggcgagctccctgaactccctctcgtacctctccttgccgccggg 1002 Query: 291 g 291 | Sbjct: 1001 g 1001
>dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0438H08 Length = 148626 Score = 73.8 bits (37), Expect = 4e-10 Identities = 100/121 (82%) Strand = Plus / Plus Query: 171 ctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccggt 230 |||||||||| |||| || |||||| || |||||| |||||||||||||||| |||||| Sbjct: 109263 ctacttggtgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaagccggt 109322 Query: 231 aaacccggcagccctggcgagcttctcgaggtccctcaggtacctttccttgccgccggg 290 || ||||| || | |||||||| | || |||||| |||||| |||||||||||||| Sbjct: 109323 gaatccggcggcgcgggcgagctccctgaactccctctcgtacctctccttgccgccggg 109382 Query: 291 g 291 | Sbjct: 109383 g 109383
>dbj|AB122056.1| Oryza sativa (japonica cultivar-group) COMT mRNA for caffeic acid o-methyl transferase, partial cds Length = 1067 Score = 65.9 bits (33), Expect = 1e-07 Identities = 99/121 (81%) Strand = Plus / Minus Query: 171 ctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccggt 230 |||||| ||| |||| || |||||| || |||||| |||||||||||||||| |||||| Sbjct: 807 ctactttgtgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaagccggt 748 Query: 231 aaacccggcagccctggcgagcttctcgaggtccctcaggtacctttccttgccgccggg 290 || ||||| || | |||||||| | || |||||| |||||| |||||||||||||| Sbjct: 747 gaatccggcggcgcgggcgagctccctgaactccctctcgtacctctccttgccgccggg 688 Query: 291 g 291 | Sbjct: 687 g 687
>dbj|AK064768.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000A05, full insert sequence Length = 1425 Score = 65.9 bits (33), Expect = 1e-07 Identities = 99/121 (81%) Strand = Plus / Minus Query: 171 ctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccggt 230 |||||| ||| |||| || |||||| || |||||| |||||||||||||||| |||||| Sbjct: 1189 ctactttgtgaactcgatggcccaggcgttggcgtagatgtaggtggccttgaagccggt 1130 Query: 231 aaacccggcagccctggcgagcttctcgaggtccctcaggtacctttccttgccgccggg 290 || ||||| || | |||||||| | || |||||| |||||| |||||||||||||| Sbjct: 1129 gaatccggcggcgcgggcgagctccctgaactccctctcgtacctctccttgccgccggg 1070 Query: 291 g 291 | Sbjct: 1069 g 1069
>gb|BT009383.1| Triticum aestivum clone wlm96.pk033.c5:fis, full insert mRNA sequence Length = 1314 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 343 gtggcgtccgggttcaccggcaggatacactccacgttgatcaccttaccatgcgccggc 402 ||||| |||||||||||||||||||| ||||||||| | |||||| || ||||||||| Sbjct: 904 gtggcctccgggttcaccggcaggatgcactccacgagcaccaccttgccgtgcgccggc 845 Query: 403 ag 404 || Sbjct: 844 ag 843
>gb|AY226581.1| Triticum aestivum caffeic acid O-methyltransferase (COMT1) mRNA, complete cds Length = 1371 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 343 gtggcgtccgggttcaccggcaggatacactccacgttgatcaccttaccatgcgccggc 402 ||||| |||||||||||||||||||| ||||||||| | |||||| || ||||||||| Sbjct: 984 gtggcctccgggttcaccggcaggatgcactccacgagcaccaccttgccgtgcgccggc 925 Query: 403 ag 404 || Sbjct: 924 ag 923
>gb|AF153823.1|AF153823 Festuca arundinacea comt1a caffeic acid O-methyltransferase mRNA, complete cds Length = 1446 Score = 56.0 bits (28), Expect = 9e-05 Identities = 160/204 (78%) Strand = Plus / Minus Query: 171 ctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccggt 230 |||||||||| |||| || ||||| || |||||| ||||| |||| |||||||||||| Sbjct: 1127 ctacttggtgaactcgatggcccacgcgttggcgtagatgtacgtggacttgacgccggt 1068 Query: 231 aaacccggcagccctggcgagcttctcgaggtccctcaggtacctttccttgccgccggg 290 || ||||| |||||||||| || || |||||| |||||| ||| |||||||||| Sbjct: 1067 gaatccggctcccctggcgagagcctggaactccctctcgtacctctccctgccgccggg 1008 Query: 291 gctgtacgccagcaggctcacgtccacgctgattaacccctgcgtgctgtttgtggcgtc 350 | ||| ||| |||| | ||| ||| ||| || | |||||||| |||| |||| || Sbjct: 1007 gttgtgcgcgagcatgatcatgtcgacgtggaagaccccctgcgagctgggattggcctc 948 Query: 351 cgggttcaccggcaggatacactc 374 |||||| ||||||||||| ||||| Sbjct: 947 cgggttgaccggcaggatgcactc 924
>gb|AF033540.1|AF033540 Lolium perenne caffeic acid O-methyltransferase (OMT3) mRNA, complete cds Length = 1436 Score = 54.0 bits (27), Expect = 4e-04 Identities = 162/207 (78%) Strand = Plus / Minus Query: 171 ctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccggt 230 |||||||||| |||| || |||||| || |||||| ||||| |||| ||||| ||||| Sbjct: 1171 ctacttggtgaactcgatggcccaggcgttggcgtagatgtatgtggacttgaagccggc 1112 Query: 231 aaacccggcagccctggcgagcttctcgaggtccctcaggtacctttccttgccgccggg 290 || || || ||||||||||| |||| |||||| |||||| ||| ||||||| || Sbjct: 1111 gaagccagctcccctggcgagcgcctcgtactccctctcgtacctctccctgccgcctgg 1052 Query: 291 gctgtacgccagcaggctcacgtccacgctgattaacccctgcgtgctgtttgtggcgtc 350 | ||| ||| |||| | ||| ||| ||| || | |||||||| |||| |||| || Sbjct: 1051 gttgtgcgcgagcatgatcatgtcgacgtggaacaccccctgcgagctgggcttggcctc 992 Query: 351 cgggttcaccggcaggatacactccac 377 |||||||||||||||||| |||||||| Sbjct: 991 cgggttcaccggcaggatgcactccac 965
>gb|AF033538.1|AF033538 Lolium perenne caffeic acid O-methyltransferase (OMT1) mRNA, complete cds Length = 1455 Score = 54.0 bits (27), Expect = 4e-04 Identities = 159/203 (78%) Strand = Plus / Minus Query: 171 ctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccggt 230 |||||||||| |||| || ||||| || |||||| ||||| |||| |||||||||||| Sbjct: 1134 ctacttggtgaactcgatggcccacgcgttggcgtagatgtacgtggacttgacgccggt 1075 Query: 231 aaacccggcagccctggcgagcttctcgaggtccctcaggtacctttccttgccgccggg 290 || ||||| |||||||||| || || |||||| |||||| ||| |||||||||| Sbjct: 1074 gaatccggctcccctggcgagagcctggaactccctctcgtacctctccctgccgccggg 1015 Query: 291 gctgtacgccagcaggctcacgtccacgctgattaacccctgcgtgctgtttgtggcgtc 350 | ||| ||| |||| | ||| ||| ||| || | |||||||| |||| |||| || Sbjct: 1014 gttgtgcgcgagcatgatcatgtcgacgtggaagaccccctgcgagctgggattggcctc 955 Query: 351 cgggttcaccggcaggatacact 373 |||||| ||||||||||| |||| Sbjct: 954 cgggttgaccggcaggatgcact 932
>gb|AF153824.1|AF153824 Festuca arundinacea comt1b caffeic acid O-methyltransferase mRNA, complete cds Length = 1440 Score = 50.1 bits (25), Expect = 0.006 Identities = 136/173 (78%) Strand = Plus / Minus Query: 202 gcgtaaatgtaggtggccttgacgccggtaaacccggcagccctggcgagcttctcgagg 261 ||||| ||||| |||| |||||||||||| ||||| || ||||||| || ||||| Sbjct: 1122 gcgtagatgtacgtggacttgacgccggtgaacccagctcccctggccagggcctcgaac 1063 Query: 262 tccctcaggtacctttccttgccgccggggctgtacgccagcaggctcacgtccacgctg 321 |||||| |||||| ||| ||||||||||| ||| ||| |||| | ||| ||| ||| | Sbjct: 1062 tccctctcgtacctctccctgccgccggggttgtgcgcgagcatgatcatgtcgacgtgg 1003 Query: 322 attaacccctgcgtgctgtttgtggcgtccgggttcaccggcaggatacactc 374 | | |||||||| |||| |||| |||||||| ||||||||||| ||||| Sbjct: 1002 aagaccccctgcgagctgggcttggcctccgggttgaccggcaggatgcactc 950
>emb|AJ586105.1| Lolium multiflorum partial mRNA for putative caffeate o-methyltransferase (comt gene) Length = 878 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Minus Query: 344 tggcgtccgggttcaccggcaggatacactccacgttgatcaccttaccatgcgccggca 403 |||| |||||||||||||||||||| ||||| ||| | |||||| || |||||||||| Sbjct: 804 tggcctccgggttcaccggcaggatgcactcgacgagcaccaccttgccgtgcgccggca 745 Query: 404 g 404 | Sbjct: 744 g 744
>gb|AF502287.1| Triticum aestivum caffeic acid O-methyltransferase mRNA, partial cds Length = 604 Score = 48.1 bits (24), Expect = 0.022 Identities = 33/36 (91%) Strand = Plus / Minus Query: 343 gtggcgtccgggttcaccggcaggatacactccacg 378 ||||| |||||||||||||||| ||| ||||||||| Sbjct: 536 gtggcttccgggttcaccggcaagatgcactccacg 501
>gb|DQ223971.1| Triticum aestivum flavonoid O-methyltransferase mRNA, complete cds Length = 1233 Score = 46.1 bits (23), Expect = 0.088 Identities = 47/55 (85%) Strand = Plus / Minus Query: 349 tccgggttcaccggcaggatacactccacgttgatcaccttaccatgcgccggca 403 ||||||||||| |||||||| ||||||||| | |||||| || |||||||||| Sbjct: 967 tccgggttcacaggcaggatgcactccacgagcaccaccttgccgtgcgccggca 913
>gb|AF153826.1|AF153826 Festuca arundinacea comt3 caffeic acid O-methyltransferase mRNA, complete cds Length = 1430 Score = 46.1 bits (23), Expect = 0.088 Identities = 161/207 (77%) Strand = Plus / Minus Query: 171 ctacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttgacgccggt 230 |||||||||| |||| || |||||| || |||||| ||||| |||| ||||| ||||| Sbjct: 1160 ctacttggtgaactcgatggcccaggcgttggcgtagatgtatgtggacttgaagccggc 1101 Query: 231 aaacccggcagccctggcgagcttctcgaggtccctcaggtacctttccttgccgccggg 290 || || || || |||||||| ||||| |||||| |||||| ||| |||| ||||| Sbjct: 1100 gaagccagctcccttggcgagcgcctcgaactccctctcgtacctctccctgccaccggg 1041 Query: 291 gctgtacgccagcaggctcacgtccacgctgattaacccctgcgtgctgtttgtggcgtc 350 | ||| ||| |||| | ||| ||| ||| || | |||||||| |||| |||| || Sbjct: 1040 gttgtgcgcgagcatgatcatgtcgacgtggaacaccccctgcgagctgggcttggcctc 981 Query: 351 cgggttcaccggcaggatacactccac 377 ||||| |||||||||||| |||||||| Sbjct: 980 cgggtgcaccggcaggatgcactccac 954
>ref|XM_742823.1| Aspergillus fumigatus Af293 AMP-binding protein (Afu5g04270) partial mRNA Length = 2127 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 245 tggcgagcttctcgaggtccctcag 269 |||||| |||||||||||||||||| Sbjct: 1930 tggcgatcttctcgaggtccctcag 1906
>emb|BX037446.1|CNS09122 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA9DF09 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 691 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 cttccttttattcgaacacaa 50 ||||||||||||||||||||| Sbjct: 25 cttccttttattcgaacacaa 45
>gb|AC099022.1| Drosophila melanogaster, chromosome 2L, region 23C-23D, BAC clone BACR48B06, complete sequence Length = 184554 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 26 cttgcttccttttattcgaacacaa 50 |||||||||||||||||||| |||| Sbjct: 29824 cttgcttccttttattcgaatacaa 29800
>gb|AC008321.7| Drosophila melanogaster, chromosome 2L, region 23D-23F, BAC clone BACR11E09, complete sequence Length = 169931 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 26 cttgcttccttttattcgaacacaa 50 |||||||||||||||||||| |||| Sbjct: 88188 cttgcttccttttattcgaatacaa 88164
>gb|AE003580.3| Drosophila melanogaster chromosome 2L, section 11 of 83 of the complete sequence Length = 286920 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 26 cttgcttccttttattcgaacacaa 50 |||||||||||||||||||| |||| Sbjct: 28588 cttgcttccttttattcgaatacaa 28612
>gb|L09204.1|DROTRS7A Drosophila melanogaster transfer RNA (tRNA-Ser7) gene Length = 3485 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 26 cttgcttccttttattcgaacacaa 50 |||||||||||||||||||| |||| Sbjct: 239 cttgcttccttttattcgaatacaa 215
>gb|AC102938.20| Mus musculus chromosome 1, clone RP24-187H3, complete sequence Length = 197114 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ctggtagcaagaaaacagca 145 |||||||||||||||||||| Sbjct: 149759 ctggtagcaagaaaacagca 149740
>gb|AC123531.4| Mus musculus BAC clone RP24-289C11 from chromosome 15, complete sequence Length = 165766 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 5 atggaggacacgcatgttgcccttgctt 32 ||||| |||| ||||||||||||||||| Sbjct: 70575 atggaagacatgcatgttgcccttgctt 70602
>gb|AF139593.2| Xanthobacter autotrophicus outer membrane receptor-like protein gene, partial cds; and methylene tetrahydromethanopterin dehydrogenase (mtdB), methenyl tetrahydromethanopterin cyclohydrolase (mch), putative tetrahydromethanopterin biosynthesis protein, conserved hypothetical protein, putative tetrahydromethanopterin biosynthesis protein, putative cytochrome C protein, formyltransferase/cyclohydrolase complex subunit C (fhcC), formyltransferase/cyclohydrolase complex subunit D (fhcD), formyltransferase/cyclohydrolase complex subunit A (fhcA), formyltransferase/cyclohydrolase complex subunit B (fhcB), conserved hypothetical protein, and putative protein genes, complete cds Length = 13310 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 343 gtggcgtccgggttcaccggcagg 366 ||||||||| |||||||||||||| Sbjct: 586 gtggcgtccaggttcaccggcagg 563
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gggctgtacgccagcaggct 308 |||||||||||||||||||| Sbjct: 1331511 gggctgtacgccagcaggct 1331530
>emb|AJ231133.1|SOF231133 Saccharum officinarum mRNA for caffeic acid 3-O-methyltransferase Length = 1486 Score = 40.1 bits (20), Expect = 5.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 172 tacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttga 223 |||||| || |||| || |||||| || |||||| |||||||||||||||| Sbjct: 1192 tacttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttga 1141
>gb|AY365419.1| Saccharum hybrid cultivar caffeic acid 3-O-methyltransferase (COMT) gene, complete cds Length = 2012 Score = 40.1 bits (20), Expect = 5.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 172 tacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttga 223 |||||| || |||| || |||||| || |||||| |||||||||||||||| Sbjct: 2011 tacttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttga 1960
>gb|BT009359.1| Triticum aestivum clone wlm96.pk025.c3:fis, full insert mRNA sequence Length = 1308 Score = 40.1 bits (20), Expect = 5.4 Identities = 35/40 (87%) Strand = Plus / Minus Query: 355 ttcaccggcaggatacactccacgttgatcaccttaccat 394 |||||||||||||| | ||||||| ||| |||||| |||| Sbjct: 997 ttcaccggcaggatgccctccacgatgaccaccttgccat 958
>gb|AY217766.1| Sorghum bicolor caffeic acid O-methyltransferase gene, complete cds Length = 3312 Score = 40.1 bits (20), Expect = 5.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 172 tacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttga 223 |||||| || |||| || |||||| || |||||| |||||||||||||||| Sbjct: 2778 tacttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttga 2727
>gb|AC007268.5| Arabidopsis thaliana chromosome 2 clone T27D6 map PR1, complete sequence Length = 89685 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 ttccttttattcgaacacaaaata 54 ||||||| |||||||||||||||| Sbjct: 1413 ttcctttaattcgaacacaaaata 1390
>gb|AF410153.1| Swinepox virus isolate 17077-99, complete genome Length = 146454 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 95 tacggtcgattaagatttattagaaatt 122 |||||| ||| ||||||||||||||||| Sbjct: 80246 tacggttgatgaagatttattagaaatt 80219
>gb|AF387790.1|AF387790 Sorghum bicolor O-methyltransferase mRNA, complete cds Length = 1458 Score = 40.1 bits (20), Expect = 5.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 172 tacttggtgtactccattgcccagaagtcggcgtaaatgtaggtggccttga 223 |||||| || |||| || |||||| || |||||| |||||||||||||||| Sbjct: 1197 tacttgatgaactcgatggcccaggcgttggcgtagatgtaggtggccttga 1146
>ref|XM_693754.1| PREDICTED: Danio rerio similar to gamma filamin (LOC570288), mRNA Length = 7913 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 caaaatacaaaatgaaacga 67 |||||||||||||||||||| Sbjct: 7345 caaaatacaaaatgaaacga 7326
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 gccgccggggctgtacgcca 301 |||||||||||||||||||| Sbjct: 5399480 gccgccggggctgtacgcca 5399499
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 ggatacactccacgttgatc 384 |||||||||||||||||||| Sbjct: 6810538 ggatacactccacgttgatc 6810557
>gb|AF260441.1|AF260441 HIV-1 isolate 85CD220 from Democratic Republic of the Congo, env glycoprotein, C2-V3 region (env) gene, partial cds Length = 522 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 ttaacccctgcgtgctgttt 342 |||||||||||||||||||| Sbjct: 420 ttaacccctgcgtgctgttt 401
>dbj|AB085506.1| Uncultured bacterium gene for putative formyltetrahydrofolate synthetase, partial cds, clone:FPB08 Length = 1057 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 189 tgcccagaagtcggcgtaaatgta 212 ||||||||| |||||||||||||| Sbjct: 794 tgcccagaactcggcgtaaatgta 817
>dbj|AP004754.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0529B09 Length = 138188 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 gccgccggggctgtacgcca 301 |||||||||||||||||||| Sbjct: 30414 gccgccggggctgtacgcca 30433
>dbj|AP005826.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0758B01 Length = 159206 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 ggatacactccacgttgatc 384 |||||||||||||||||||| Sbjct: 28264 ggatacactccacgttgatc 28283
>dbj|AP005797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1131G07 Length = 133992 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 ggatacactccacgttgatc 384 |||||||||||||||||||| Sbjct: 131591 ggatacactccacgttgatc 131610
>dbj|AK110984.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-C12, full insert sequence Length = 2189 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 ggatacactccacgttgatc 384 |||||||||||||||||||| Sbjct: 791 ggatacactccacgttgatc 810
>emb|BX890617.13| Zebrafish DNA sequence from clone DKEYP-84F11 in linkage group 19, complete sequence Length = 182182 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 acacaaaatacaaaatgaaa 64 |||||||||||||||||||| Sbjct: 13106 acacaaaatacaaaatgaaa 13125
>emb|BX470230.5| Zebrafish DNA sequence from clone CH211-284B12 in linkage group 4, complete sequence Length = 173564 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 caaaatacaaaatgaaacga 67 |||||||||||||||||||| Sbjct: 65724 caaaatacaaaatgaaacga 65705
>dbj|AK113726.1| Ciona intestinalis cDNA, clone:cicl006j12, full insert sequence Length = 1703 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 aatacaaaatgaaacgattg 70 |||||||||||||||||||| Sbjct: 1599 aatacaaaatgaaacgattg 1580
>emb|AL954190.5| Zebrafish DNA sequence from clone DKEY-30O6 in linkage group 4, complete sequence Length = 144062 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 caaaatacaaaatgaaacga 67 |||||||||||||||||||| Sbjct: 28373 caaaatacaaaatgaaacga 28354 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,941,002 Number of Sequences: 3902068 Number of extensions: 3941002 Number of successful extensions: 68918 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68772 Number of HSP's gapped (non-prelim): 135 length of query: 407 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 385 effective length of database: 17,147,199,772 effective search space: 6601671912220 effective search space used: 6601671912220 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)