ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart58c04 |
|---|---|
| Clone Library Name | barley_pub |
>CY11_SOLTU (P25076) Cytochrome c1, heme protein, mitochondrial precursor| (Clone PC13III) Length = 320 Score = 130 bits (327), Expect = 1e-30 Identities = 64/78 (82%), Positives = 66/78 (84%) Frame = -3 Query: 416 LMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYR 237 L DGA+EYEDG PATEAQMGKDVVSFLSWAAEPEMEERKLMG KWIF AYYR Sbjct: 243 LNDGAVEYEDGIPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYR 302 Query: 236 RMRWSVLKSRKLVLDVVN 183 R+RWSVLKSRKLVLDVVN Sbjct: 303 RLRWSVLKSRKLVLDVVN 320
>CY12_SOLTU (P29610) Cytochrome c1, heme protein, mitochondrial precursor| (Clone PC18I) (Fragment) Length = 260 Score = 129 bits (325), Expect = 2e-30 Identities = 63/78 (80%), Positives = 66/78 (84%) Frame = -3 Query: 416 LMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYR 237 L DGA+EYEDG PATEAQMGKDVVSFL+WAAEPEMEERKLMG KWIF AYYR Sbjct: 183 LNDGAVEYEDGVPATEAQMGKDVVSFLTWAAEPEMEERKLMGFKWIFVLSLALLQAAYYR 242 Query: 236 RMRWSVLKSRKLVLDVVN 183 R+RWSVLKSRKLVLDVVN Sbjct: 243 RLRWSVLKSRKLVLDVVN 260
>CY1_NEUCR (P07142) Cytochrome c1, heme protein, mitochondrial precursor| Length = 332 Score = 89.0 bits (219), Expect = 4e-18 Identities = 40/75 (53%), Positives = 53/75 (70%) Frame = -3 Query: 416 LMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYR 237 L DG ++YEDGTPA+ +QM KDVV FL+WAAEPEM++RK MG+K + Y + Sbjct: 238 LYDGLVDYEDGTPASTSQMAKDVVEFLNWAAEPEMDDRKRMGMKVLVVTSVLFALSVYVK 297 Query: 236 RMRWSVLKSRKLVLD 192 R +W+ LKSRK+V D Sbjct: 298 RYKWAWLKSRKIVYD 312
>CY1_YEAST (P07143) Cytochrome c1, heme protein, mitochondrial precursor| Length = 309 Score = 77.8 bits (190), Expect = 9e-15 Identities = 33/75 (44%), Positives = 49/75 (65%) Frame = -3 Query: 416 LMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYR 237 L D +EYEDGTPAT +QM KDV +FL+W AEPE +ERK +G+K + + + Sbjct: 229 LFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVK 288 Query: 236 RMRWSVLKSRKLVLD 192 + +W+ +K+RK V + Sbjct: 289 KFKWAGIKTRKFVFN 303
>CY1_KLULA (Q00988) Cytochrome c1, heme protein, mitochondrial precursor| Length = 292 Score = 77.0 bits (188), Expect = 2e-14 Identities = 33/75 (44%), Positives = 49/75 (65%) Frame = -3 Query: 416 LMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYR 237 L D +EYEDGTPAT +QM KDV +FL W +EPE +ERK +G+K + + + Sbjct: 214 LFDDLVEYEDGTPATTSQMAKDVTTFLHWCSEPEHDERKRLGLKAMIVLSSLYLLSVWVK 273 Query: 236 RMRWSVLKSRKLVLD 192 + +W+ +KSRK+V + Sbjct: 274 KFKWASIKSRKIVFN 288
>CY1_MOUSE (Q9D0M3) Cytochrome c1, heme protein, mitochondrial precursor| (Cytochrome c-1) Length = 325 Score = 73.2 bits (178), Expect = 2e-13 Identities = 34/67 (50%), Positives = 45/67 (67%) Frame = -3 Query: 401 IEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWS 222 +EY+DGTPAT +Q+ KDV +FL WA+EPE + RK MG+K + +R +WS Sbjct: 253 LEYDDGTPATMSQVAKDVATFLRWASEPEHDHRKRMGLKMLLMMGLLLPLTYAMKRHKWS 312 Query: 221 VLKSRKL 201 VLKSRKL Sbjct: 313 VLKSRKL 319
>CY1_BOVIN (P00125) Cytochrome c1, heme protein, mitochondrial (Cytochrome| c-1) Length = 241 Score = 72.0 bits (175), Expect = 5e-13 Identities = 34/67 (50%), Positives = 45/67 (67%) Frame = -3 Query: 401 IEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWS 222 +E++DGTPAT +Q+ KDV +FL WAAEPE + RK MG+K + +R +WS Sbjct: 169 LEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAMKRHKWS 228 Query: 221 VLKSRKL 201 VLKSRKL Sbjct: 229 VLKSRKL 235
>CY1_HUMAN (P08574) Cytochrome c1, heme protein, mitochondrial precursor| (Cytochrome c-1) Length = 325 Score = 71.2 bits (173), Expect = 9e-13 Identities = 33/67 (49%), Positives = 45/67 (67%) Frame = -3 Query: 401 IEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWS 222 +E++DGTPAT +Q+ KDV +FL WA+EPE + RK MG+K + +R +WS Sbjct: 253 LEFDDGTPATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWS 312 Query: 221 VLKSRKL 201 VLKSRKL Sbjct: 313 VLKSRKL 319
>CY1_EUGGR (P20114) Cytochrome c1, heme protein| Length = 243 Score = 67.0 bits (162), Expect = 2e-11 Identities = 34/78 (43%), Positives = 41/78 (52%) Frame = -3 Query: 416 LMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYR 237 L D IEYEDGTPA+ QM KDV FL W + P +ERKL+G K I YY Sbjct: 163 LTDDMIEYEDGTPASVPQMAKDVTCFLEWCSNPWWDERKLLGYKTIATLAVIAVSSGYYN 222 Query: 236 RMRWSVLKSRKLVLDVVN 183 R + +SR+L N Sbjct: 223 RFLSGLWRSRRLAFRPFN 240
>CY1_RHORU (P23135) Cytochrome c1 precursor| Length = 272 Score = 61.2 bits (147), Expect = 9e-10 Identities = 27/44 (61%), Positives = 36/44 (81%) Frame = -3 Query: 416 LMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVK 285 LMD I YEDGT AT+ QM +DVV++L+WAAEPE++ RK +G+K Sbjct: 204 LMDDLITYEDGTAATKDQMAQDVVAYLNWAAEPELDARKSLGLK 247
>CYBC_BRAJA (P51131) Cytochrome b/c1 [Contains: Cytochrome b; Cytochrome c1]| Length = 687 Score = 57.4 bits (137), Expect = 1e-08 Identities = 25/42 (59%), Positives = 30/42 (71%) Frame = -3 Query: 416 LMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMG 291 L DG + Y+DG+PAT AQ KDV +FL W AEP ME RK +G Sbjct: 620 LSDGQVTYDDGSPATVAQYSKDVTTFLMWTAEPHMEARKRLG 661
>CY1_RHOCA (P08501) Cytochrome c1 precursor| Length = 279 Score = 55.8 bits (133), Expect = 4e-08 Identities = 28/71 (39%), Positives = 38/71 (53%) Frame = -3 Query: 416 LMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYR 237 L+D + YEDGTPAT QM +DV +FL WAAEP++ RK MG+ + Sbjct: 208 LVDDQVTYEDGTPATVDQMAQDVSAFLMWAAEPKLVARKQMGLVAMVMLGLLSVMLYLTN 267 Query: 236 RMRWSVLKSRK 204 + W+ K K Sbjct: 268 KRLWAPYKGHK 278
>CY1_PARDE (P13627) Cytochrome c1 precursor| Length = 450 Score = 53.9 bits (128), Expect = 1e-07 Identities = 26/68 (38%), Positives = 34/68 (50%) Frame = -3 Query: 416 LMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYR 237 L D + YEDGTPAT QM DV +FL W AEP+M +RK +G + Sbjct: 377 LSDDQVTYEDGTPATVDQMATDVAAFLMWTAEPKMMDRKQVGFVSVIFLIVLAALLYLTN 436 Query: 236 RMRWSVLK 213 + W +K Sbjct: 437 KKLWQPIK 444
>CY1_RHOVI (P81379) Cytochrome c1 precursor| Length = 282 Score = 52.4 bits (124), Expect = 4e-07 Identities = 22/42 (52%), Positives = 29/42 (69%) Frame = -3 Query: 416 LMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMG 291 + DG + Y DGTP T+ Q KDV +FL WAAEP ++ RK +G Sbjct: 211 IADGLVTYGDGTPETQLQYSKDVAAFLMWAAEPTLDVRKRIG 252
>CY1_RHOSH (Q02760) Cytochrome c1 precursor| Length = 285 Score = 47.8 bits (112), Expect = 1e-05 Identities = 24/71 (33%), Positives = 35/71 (49%) Frame = -3 Query: 416 LMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYR 237 LMD +EY DG A+ M +DV +FL WAAEP++ RK G + Sbjct: 211 LMDDLVEYADGHDASVHAMAEDVSAFLMWAAEPKLMARKQAGFTAVMFLTVLSVLLYLTN 270 Query: 236 RMRWSVLKSRK 204 + W+ +K +K Sbjct: 271 KRLWAGVKGKK 281
>NCOR1_HUMAN (O75376) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR)| Length = 2440 Score = 28.5 bits (62), Expect = 6.6 Identities = 16/46 (34%), Positives = 25/46 (54%) Frame = +2 Query: 224 TTSCDGSMRLGEEQVTVGRSI*HPSVSSLPFQAQLPTTRTTRHPCP 361 +TS G+ + + V + H +++LP +LPTTR TR P P Sbjct: 990 STSPCGTSKSPNREWEVLQPAPHQVITNLPEGVRLPTTRPTRPPPP 1035
>Y1127_VIBCH (Q9KSX9) UPF0274 protein VC1127| Length = 205 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -2 Query: 351 CRVVLVVGS*A*NGREETDGCQMDLPTVTCSSPSRIL 241 C+ V +V A NG ++D + L +TC++PS L Sbjct: 16 CQAVALVQQVAKNGYCDSDAFETSLKAITCTNPSNTL 52
>PLCB4_RAT (Q9QW07) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 4 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-4) (PLC-beta-4) Length = 1175 Score = 28.1 bits (61), Expect = 8.6 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +2 Query: 59 DCTQGMMGDNQSSKIYNGKSLFRSLLLKDSMLQ*KEETMVTS 184 DC G G++Q I +GK++ +L KD + KE VTS Sbjct: 360 DCWDGK-GEDQEPIITHGKAMCTDILFKDVIQAIKETAFVTS 400
>PLCB4_HUMAN (Q15147) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 4 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-4) (PLC-beta-4) Length = 1175 Score = 28.1 bits (61), Expect = 8.6 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +2 Query: 59 DCTQGMMGDNQSSKIYNGKSLFRSLLLKDSMLQ*KEETMVTS 184 DC G G++Q I +GK++ +L KD + KE VTS Sbjct: 360 DCWDGK-GEDQEPIITHGKAMCTDILFKDVIQAIKETAFVTS 400
>ECR_CHITE (P49882) Ecdysone receptor (Ecdysteroid receptor)| (20-hydroxy-ecdysone receptor) (20E receptor) (EcRH) Length = 536 Score = 28.1 bits (61), Expect = 8.6 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +2 Query: 2 ENNCSLKRNAFAAEEENKRDCTQGMMGDNQSSKIYNGKSL 121 EN C++KR A++E +D G++G N SS +SL Sbjct: 188 ENQCAIKRKEKKAQKE--KDKVPGIVGSNTSSSSLLNQSL 225
>PLCB4_BOVIN (Q07722) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 4 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-4) (PLC-beta-4) (PCL-C1) (Fragment) Length = 1023 Score = 28.1 bits (61), Expect = 8.6 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +2 Query: 59 DCTQGMMGDNQSSKIYNGKSLFRSLLLKDSMLQ*KEETMVTS 184 DC G G++Q I +GK++ +L KD + KE VTS Sbjct: 196 DCWDGK-GEDQEPIITHGKAMCTDILFKDVIQAIKETAFVTS 236
>NCOR1_MOUSE (Q60974) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (Retinoid X| receptor-interacting protein 13) (RIP13) Length = 2453 Score = 28.1 bits (61), Expect = 8.6 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +2 Query: 290 HPSVSSLPFQAQLPTTRTTRHPCP 361 H +++LP +LPTTR TR P P Sbjct: 1024 HQVITNLPEGVRLPTTRPTRPPPP 1047 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,746,505 Number of Sequences: 219361 Number of extensions: 1145225 Number of successful extensions: 3083 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3016 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3082 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
