Clone Name | rbart58c04 |
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Clone Library Name | barley_pub |
>gb|AY090551.1| Deschampsia antarctica clone Dacor 1.1 cytochrome c1 precursor mRNA, 3' UTR and partial cds Length = 418 Score = 515 bits (260), Expect = e-143 Identities = 369/404 (91%), Gaps = 1/404 (0%) Strand = Plus / Minus Query: 4 aaataactgctcccttaagagaaatgcttttgcagcagaggaagaaaacaaaagagattg 63 |||||||||||||||| ||||||||||||||||||||| || ||||||| |||| ||| Sbjct: 403 aaataactgctcccttg-gagaaatgcttttgcagcagaagaggaaaacagaagaaattc 345 Query: 64 tacccaaggtatgatgggagacaaccagagtagcaaaatatacaacggaaagtccttatt 123 || || || |||||||||||||||| ||| ||||||| |||||| ||||||| ||||| Sbjct: 344 taggcaggggatgatgggagacaaccccagtggcaaaatgtacaacagaaagtcattatt 285 Query: 124 tcgatcgcttctgcttaaagactcgatgttgcaatagaaagaagaaacaatggtcactag 183 ||||| |||||||||||||||||| | |||| | || ||||||||||||||||||| || Sbjct: 284 tcgatagcttctgcttaaagactcaacgttgtagtaaaaagaagaaacaatggtcatcag 225 Query: 184 ttgacgacgtccaggaccagcttgcgggacttgaggacagaccacctcatgcgacggtag 243 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 224 ttgacgacatccaggaccagcttgcgggacttgaggaccgaccacctcatgcgacggtag 165 Query: 244 tatgcggcttggagaagagcaagtgacagtaggaagatccatttgacacccatcagtttc 303 ||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 164 tatgcagcttggataagtgcaagtgacagtaggaagatccatttgacacccatcagtttc 105 Query: 304 ctctcttccatttcaggctcagctgcccacgacaagaacgacacgacatccttgcccatc 363 ||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||| Sbjct: 104 ctctcttccatttcaggctcagccgcccatgacaagaatgacacaacatccttgcccatc 45 Query: 364 tgggcttcagttgcaggagtaccatcttcatactcaatagctcc 407 ||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 44 tgggcttcagttgcaggagtaccatcttcatactcaacagctcc 1
>dbj|AK070578.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061F14, full insert sequence Length = 1367 Score = 339 bits (171), Expect = 4e-90 Identities = 235/255 (92%), Gaps = 1/255 (0%) Strand = Plus / Minus Query: 165 aagaaacaatggtcact-agttgacgacgtccaggaccagcttgcgggacttgaggacag 223 |||||||| ||||| || ||||||| || || |||||||||||||| ||||| ||||| | Sbjct: 1135 aagaaacagtggtccctcagttgacaacatcaaggaccagcttgcgtgacttcaggacgg 1076 Query: 224 accacctcatgcgacggtagtatgcggcttggagaagagcaagtgacagtaggaagatcc 283 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1075 accacctcatgcgacggtagtatgcggcttggagaagtgcaagtgacagtaggaagatcc 1016 Query: 284 atttgacacccatcagtttcctctcttccatttcaggctcagctgcccacgacaagaacg 343 |||| || ||||||||||||||||||||||| ||||| ||||||||||| |||||||||| Sbjct: 1015 atttcactcccatcagtttcctctcttccatctcaggttcagctgcccatgacaagaacg 956 Query: 344 acacgacatccttgcccatctgggcttcagttgcaggagtaccatcttcatactcaatag 403 | ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| || Sbjct: 955 aaacgacatccttgcccatctgggcttcagtggcaggagtaccatcttcatattcaacag 896 Query: 404 ctccatccataagca 418 ||||||| ||||||| Sbjct: 895 ctccatctataagca 881 Score = 58.0 bits (29), Expect = 2e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 25 aaatgcttttgcagcagaggaagaaaaca 53 ||||||||||||||||||||||||||||| Sbjct: 1262 aaatgcttttgcagcagaggaagaaaaca 1234
>gb|BT016510.1| Zea mays clone Contig343 mRNA sequence Length = 1417 Score = 264 bits (133), Expect = 2e-67 Identities = 205/229 (89%) Strand = Plus / Minus Query: 182 agttgacgacgtccaggaccagcttgcgggacttgaggacagaccacctcatgcgacggt 241 |||||||||| |||||||||||||| |||||||| ||||| |||||||||||||| |||| Sbjct: 1034 agttgacgacatccaggaccagctttcgggacttcaggactgaccacctcatgcggcggt 975 Query: 242 agtatgcggcttggagaagagcaagtgacagtaggaagatccatttgacacccatcagtt 301 |||| || ||||||||||| || ||||| ||||| ||||||||||| || |||||||| | Sbjct: 974 agtaggcagcttggagaagcgctagtgatagtagaaagatccatttcactcccatcagct 915 Query: 302 tcctctcttccatttcaggctcagctgcccacgacaagaacgacacgacatccttgccca 361 | ||||||||||| |||||||||||||||||||| | ||| || ||||||||||| |||| Sbjct: 914 ttctctcttccatctcaggctcagctgcccacgaaaggaatgatacgacatccttaccca 855 Query: 362 tctgggcttcagttgcaggagtaccatcttcatactcaatagctccatc 410 ||||||||||||||||||| |||||||| |||||||||| ||||||||| Sbjct: 854 tctgggcttcagttgcaggtgtaccatcctcatactcaacagctccatc 806
>gb|AY103572.1| Zea mays PCO092029 mRNA sequence Length = 1394 Score = 240 bits (121), Expect = 3e-60 Identities = 202/229 (88%) Strand = Plus / Minus Query: 182 agttgacgacgtccaggaccagcttgcgggacttgaggacagaccacctcatgcgacggt 241 ||||||| || |||||||||||||| |||||||| | ||| |||||||||||||| |||| Sbjct: 1078 agttgacaacatccaggaccagcttacgggacttcaagactgaccacctcatgcggcggt 1019 Query: 242 agtatgcggcttggagaagagcaagtgacagtaggaagatccatttgacacccatcagtt 301 ||||||| ||||| ||||| || ||||| ||||| ||||||||||| || |||||||| | Sbjct: 1018 agtatgcagcttgaagaagcgctagtgatagtagaaagatccatttcactcccatcagct 959 Query: 302 tcctctcttccatttcaggctcagctgcccacgacaagaacgacacgacatccttgccca 361 | ||||||||||| ||||||||||||||||| || | ||| || || |||||||| |||| Sbjct: 958 ttctctcttccatctcaggctcagctgcccatgaaaggaatgatacaacatccttaccca 899 Query: 362 tctgggcttcagttgcaggagtaccatcttcatactcaatagctccatc 410 |||||||||||||||||||||||||||| |||||||||| ||||||||| Sbjct: 898 tctgggcttcagttgcaggagtaccatcctcatactcaacagctccatc 850
>gb|BT012926.1| Lycopersicon esculentum clone 114089R, mRNA sequence Length = 1382 Score = 184 bits (93), Expect = 2e-43 Identities = 195/229 (85%) Strand = Plus / Minus Query: 182 agttgacgacgtccaggaccagcttgcgggacttgaggacagaccacctcatgcgacggt 241 ||||||| || || ||||||| ||||| || || ||||||||||| |||| |||||||| Sbjct: 1130 agttgacaacatcgaggaccaatttgcgagatttcaggacagaccatctcaggcgacggt 1071 Query: 242 agtatgcggcttggagaagagcaagtgacagtaggaagatccatttgacacccatcagtt 301 |||| || ||||||||||| |||||||| | | ||| |||||||||| ||||||||| | Sbjct: 1070 agtaagctgcttggagaagtgcaagtgataagacgaatatccatttgaaacccatcagct 1011 Query: 302 tcctctcttccatttcaggctcagctgcccacgacaagaacgacacgacatccttgccca 361 | |||||||||||||| |||||||| ||||| |||||||||||||| ||||| || |||| Sbjct: 1010 ttctctcttccatttctggctcagcagcccatgacaagaacgacacaacatcttttccca 951 Query: 362 tctgggcttcagttgcaggagtaccatcttcatactcaatagctccatc 410 | || || ||||||||||| |||||||||||||||||| ||| ||||| Sbjct: 950 tttgtgcctcagttgcaggtataccatcttcatactcaacagcaccatc 902
>ref|NM_190059.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 915 Score = 172 bits (87), Expect = 6e-40 Identities = 189/223 (84%) Strand = Plus / Minus Query: 196 aggaccagcttgcgggacttgaggacagaccacctcatgcgacggtagtatgcggcttgg 255 |||||||||||||| |||||| ||| |||||| ||||||| ||||| ||||| ||||| Sbjct: 899 aggaccagcttgcgcgacttgtagacggaccacttcatgcgccggtaatatgcagcttgc 840 Query: 256 agaagagcaagtgacagtaggaagatccatttgacacccatcagtttcctctcttccatt 315 ||||| || || || ||||| || |||||||| || ||||||||||| ||||||||||| Sbjct: 839 agaagtgcgagggagagtagaaaaatccatttcactcccatcagttttctctcttccatc 780 Query: 316 tcaggctcagctgcccacgacaagaacgacacgacatccttgcccatctgggcttcagtt 375 |||||||| || ||||| ||||||||||| || ||||| || |||||||||||||| || Sbjct: 779 tcaggctccgccgcccatgacaagaacgagacaacatcttttcccatctgggcttctgta 720 Query: 376 gcaggagtaccatcttcatactcaatagctccatccataagca 418 || ||||| |||||||||||||| | |||||||| ||||||| Sbjct: 719 gctggagtgccatcttcatactcgactgctccatcaataagca 677
>dbj|AK069403.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013M20, full insert sequence Length = 1379 Score = 172 bits (87), Expect = 6e-40 Identities = 189/223 (84%) Strand = Plus / Minus Query: 196 aggaccagcttgcgggacttgaggacagaccacctcatgcgacggtagtatgcggcttgg 255 |||||||||||||| |||||| ||| |||||| ||||||| ||||| ||||| ||||| Sbjct: 1047 aggaccagcttgcgcgacttgtagacggaccacttcatgcgccggtaatatgcagcttgc 988 Query: 256 agaagagcaagtgacagtaggaagatccatttgacacccatcagtttcctctcttccatt 315 ||||| || || || ||||| || |||||||| || ||||||||||| ||||||||||| Sbjct: 987 agaagtgcgagggagagtagaaaaatccatttcactcccatcagttttctctcttccatc 928 Query: 316 tcaggctcagctgcccacgacaagaacgacacgacatccttgcccatctgggcttcagtt 375 |||||||| || ||||| ||||||||||| || ||||| || |||||||||||||| || Sbjct: 927 tcaggctccgccgcccatgacaagaacgagacaacatcttttcccatctgggcttctgta 868 Query: 376 gcaggagtaccatcttcatactcaatagctccatccataagca 418 || ||||| |||||||||||||| | |||||||| ||||||| Sbjct: 867 gctggagtgccatcttcatactcgactgctccatcaataagca 825
>gb|AY805120.1| Ornithogalum virens clone 3OvF39 putative cytochrome c1 precursor protein mRNA, partial cds Length = 923 Score = 167 bits (84), Expect = 4e-38 Identities = 186/220 (84%) Strand = Plus / Minus Query: 199 accagcttgcgggacttgaggacagaccacctcatgcgacggtagtatgcggcttggaga 258 ||||||||||| ||||||| ||||||||||| || |||||||| ||| | ||||| || Sbjct: 539 accagcttgcgtgacttgaagacagaccaccgcaaacgacggtaatatccagcttgaagg 480 Query: 259 agagcaagtgacagtaggaagatccatttgacacccatcagtttcctctcttccatttca 318 || || ||||| || | ||| |||||||||| ||||||||||| | ||||||||| || Sbjct: 479 agcgccagtgatagcacgaaaatccatttgaatcccatcagtttgcgctcttccatctcg 420 Query: 319 ggctcagctgcccacgacaagaacgacacgacatccttgcccatctgggcttcagttgca 378 ||||| ||||||||||| || || || ||||| ||||| |||||||| |||||||||||| Sbjct: 419 ggctccgctgcccacgataaaaatgaaacgacgtccttccccatctgagcttcagttgca 360 Query: 379 ggagtaccatcttcatactcaatagctccatccataagca 418 || ||||||||||||||||| | ||||||||| ||||||| Sbjct: 359 ggggtaccatcttcatactctaaagctccatctataagca 320
>gb|AC093953.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OJ1057_C01, complete sequence Length = 142752 Score = 163 bits (82), Expect = 6e-37 Identities = 122/134 (91%), Gaps = 1/134 (0%) Strand = Plus / Plus Query: 165 aagaaacaatggtcact-agttgacgacgtccaggaccagcttgcgggacttgaggacag 223 |||||||| ||||| || ||||||| || || |||||||||||||| ||||| ||||| | Sbjct: 93295 aagaaacagtggtccctcagttgacaacatcaaggaccagcttgcgtgacttcaggacgg 93354 Query: 224 accacctcatgcgacggtagtatgcggcttggagaagagcaagtgacagtaggaagatcc 283 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 93355 accacctcatgcgacggtagtatgcggcttggagaagtgcaagtgacagtaggaagatcc 93414 Query: 284 atttgacacccatc 297 |||| || |||||| Sbjct: 93415 atttcactcccatc 93428 Score = 105 bits (53), Expect = 1e-19 Identities = 65/69 (94%) Strand = Plus / Plus Query: 297 cagtttcctctcttccatttcaggctcagctgcccacgacaagaacgacacgacatcctt 356 |||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||| Sbjct: 93512 cagtttcctctcttccatctcaggttcagctgcccatgacaagaacgaaacgacatcctt 93571 Query: 357 gcccatctg 365 ||||||||| Sbjct: 93572 gcccatctg 93580 Score = 79.8 bits (40), Expect = 7e-12 Identities = 52/56 (92%) Strand = Plus / Plus Query: 363 ctgggcttcagttgcaggagtaccatcttcatactcaatagctccatccataagca 418 |||||||||||| |||||||||||||||||||| |||| ||||||||| ||||||| Sbjct: 93672 ctgggcttcagtggcaggagtaccatcttcatattcaacagctccatctataagca 93727 Score = 58.0 bits (29), Expect = 2e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 25 aaatgcttttgcagcagaggaagaaaaca 53 ||||||||||||||||||||||||||||| Sbjct: 93168 aaatgcttttgcagcagaggaagaaaaca 93196
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 163 bits (82), Expect = 6e-37 Identities = 122/134 (91%), Gaps = 1/134 (0%) Strand = Plus / Plus Query: 165 aagaaacaatggtcact-agttgacgacgtccaggaccagcttgcgggacttgaggacag 223 |||||||| ||||| || ||||||| || || |||||||||||||| ||||| ||||| | Sbjct: 13409832 aagaaacagtggtccctcagttgacaacatcaaggaccagcttgcgtgacttcaggacgg 13409891 Query: 224 accacctcatgcgacggtagtatgcggcttggagaagagcaagtgacagtaggaagatcc 283 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 13409892 accacctcatgcgacggtagtatgcggcttggagaagtgcaagtgacagtaggaagatcc 13409951 Query: 284 atttgacacccatc 297 |||| || |||||| Sbjct: 13409952 atttcactcccatc 13409965 Score = 105 bits (53), Expect = 1e-19 Identities = 65/69 (94%) Strand = Plus / Plus Query: 297 cagtttcctctcttccatttcaggctcagctgcccacgacaagaacgacacgacatcctt 356 |||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||| Sbjct: 13410049 cagtttcctctcttccatctcaggttcagctgcccatgacaagaacgaaacgacatcctt 13410108 Query: 357 gcccatctg 365 ||||||||| Sbjct: 13410109 gcccatctg 13410117 Score = 79.8 bits (40), Expect = 7e-12 Identities = 52/56 (92%) Strand = Plus / Plus Query: 363 ctgggcttcagttgcaggagtaccatcttcatactcaatagctccatccataagca 418 |||||||||||| |||||||||||||||||||| |||| ||||||||| ||||||| Sbjct: 13410209 ctgggcttcagtggcaggagtaccatcttcatattcaacagctccatctataagca 13410264 Score = 58.0 bits (29), Expect = 2e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 25 aaatgcttttgcagcagaggaagaaaaca 53 ||||||||||||||||||||||||||||| Sbjct: 13409705 aaatgcttttgcagcagaggaagaaaaca 13409733
>gb|AY088099.1| Arabidopsis thaliana clone 41320 mRNA, complete sequence Length = 1361 Score = 147 bits (74), Expect = 3e-32 Identities = 191/230 (83%) Strand = Plus / Minus Query: 181 tagttgacgacgtccaggaccagcttgcgggacttgaggacagaccacctcatgcgacgg 240 ||||| || ||||| || |||||||||||||||||||| || ||||| ||| || | | Sbjct: 1036 tagttaaccacgtcaagaaccagcttgcgggacttgagaaccgaccatttcagtcgcctg 977 Query: 241 tagtatgcggcttggagaagagcaagtgacagtaggaagatccatttgacacccatcagt 300 ||||| || |||||||||||||| || || |||||||| |||||||||| |||||||||| Sbjct: 976 tagtaagcagcttggagaagagcgagagagagtaggaatatccatttgaaacccatcagt 917 Query: 301 ttcctctcttccatttcaggctcagctgcccacgacaagaacgacacgacatccttgccc 360 ||||||||||||||||| || ||||||||||| | |||||| || || | ||| || ||| Sbjct: 916 ttcctctcttccatttctggttcagctgcccaggccaagaatgatacaatatctttaccc 857 Query: 361 atctgggcttcagttgcaggagtaccatcttcatactcaatagctccatc 410 ||||| || || || || || ||||||||||||||||| |||| |||| Sbjct: 856 atctgtgcctctgtggcggggacaccatcttcatactcaacagcttcatc 807
>ref|NM_113638.2| Arabidopsis thaliana electron transporter/ electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex AT3G27240 mRNA, complete cds Length = 1414 Score = 139 bits (70), Expect = 8e-30 Identities = 190/230 (82%) Strand = Plus / Minus Query: 181 tagttgacgacgtccaggaccagcttgcgggacttgaggacagaccacctcatgcgacgg 240 ||||| || ||||| || |||||||||||||||||||| || ||||| | | || | | Sbjct: 1058 tagttaaccacgtcaagaaccagcttgcgggacttgagaaccgaccattttagtcgcctg 999 Query: 241 tagtatgcggcttggagaagagcaagtgacagtaggaagatccatttgacacccatcagt 300 ||||| || |||||||||||||| || || |||||||| |||||||||| |||||||||| Sbjct: 998 tagtaagcagcttggagaagagcgagagagagtaggaatatccatttgaaacccatcagt 939 Query: 301 ttcctctcttccatttcaggctcagctgcccacgacaagaacgacacgacatccttgccc 360 ||||||||||||||||| || ||||||||||| | |||||| || || | ||| || ||| Sbjct: 938 ttcctctcttccatttctggttcagctgcccaggccaagaatgatacaatatctttaccc 879 Query: 361 atctgggcttcagttgcaggagtaccatcttcatactcaatagctccatc 410 ||||| || || || || || ||||||||||||||||| |||| |||| Sbjct: 878 atctgtgcctctgtggcggggacaccatcttcatactcaacagcttcatc 829
>gb|AF458338.1|AF458338 Arabidopsis thaliana AT3g27240/K17E12_6 mRNA, complete cds Length = 924 Score = 139 bits (70), Expect = 8e-30 Identities = 190/230 (82%) Strand = Plus / Minus Query: 181 tagttgacgacgtccaggaccagcttgcgggacttgaggacagaccacctcatgcgacgg 240 ||||| || ||||| || |||||||||||||||||||| || ||||| | | || | | Sbjct: 923 tagttaaccacgtcaagaaccagcttgcgggacttgagaaccgaccattttagtcgcctg 864 Query: 241 tagtatgcggcttggagaagagcaagtgacagtaggaagatccatttgacacccatcagt 300 ||||| || |||||||||||||| || || |||||||| |||||||||| |||||||||| Sbjct: 863 tagtaagcagcttggagaagagcgagagagagtaggaatatccatttgaaacccatcagt 804 Query: 301 ttcctctcttccatttcaggctcagctgcccacgacaagaacgacacgacatccttgccc 360 ||||||||||||||||| || ||||||||||| | |||||| || || | ||| || ||| Sbjct: 803 ttcctctcttccatttctggttcagctgcccaggccaagaatgatacaatatctttaccc 744 Query: 361 atctgggcttcagttgcaggagtaccatcttcatactcaatagctccatc 410 ||||| || || || || || ||||||||||||||||| |||| |||| Sbjct: 743 atctgtgcctctgtggcggggacaccatcttcatactcaacagcttcatc 694
>gb|AY054246.1| Arabidopsis thaliana AT3g27240/K17E12_6 mRNA, complete cds Length = 1414 Score = 139 bits (70), Expect = 8e-30 Identities = 190/230 (82%) Strand = Plus / Minus Query: 181 tagttgacgacgtccaggaccagcttgcgggacttgaggacagaccacctcatgcgacgg 240 ||||| || ||||| || |||||||||||||||||||| || ||||| | | || | | Sbjct: 1058 tagttaaccacgtcaagaaccagcttgcgggacttgagaaccgaccattttagtcgcctg 999 Query: 241 tagtatgcggcttggagaagagcaagtgacagtaggaagatccatttgacacccatcagt 300 ||||| || |||||||||||||| || || |||||||| |||||||||| |||||||||| Sbjct: 998 tagtaagcagcttggagaagagcgagagagagtaggaatatccatttgaaacccatcagt 939 Query: 301 ttcctctcttccatttcaggctcagctgcccacgacaagaacgacacgacatccttgccc 360 ||||||||||||||||| || ||||||||||| | |||||| || || | ||| || ||| Sbjct: 938 ttcctctcttccatttctggttcagctgcccaggccaagaatgatacaatatctttaccc 879 Query: 361 atctgggcttcagttgcaggagtaccatcttcatactcaatagctccatc 410 ||||| || || || || || ||||||||||||||||| |||| |||| Sbjct: 878 atctgtgcctctgtggcggggacaccatcttcatactcaacagcttcatc 829
>emb|BX824887.1|CNS0A6WM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH80ZA02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1297 Score = 139 bits (70), Expect = 8e-30 Identities = 190/230 (82%) Strand = Plus / Minus Query: 181 tagttgacgacgtccaggaccagcttgcgggacttgaggacagaccacctcatgcgacgg 240 ||||| || ||||| || |||||||||||||||||||| || ||||| | | || | | Sbjct: 1007 tagttaaccacgtcaagaaccagcttgcgggacttgagaaccgaccattttagtcgcctg 948 Query: 241 tagtatgcggcttggagaagagcaagtgacagtaggaagatccatttgacacccatcagt 300 ||||| || |||||||||||||| || || |||||||| |||||||||| |||||||||| Sbjct: 947 tagtaagcagcttggagaagagcgagagagagtaggaatatccatttgaaacccatcagt 888 Query: 301 ttcctctcttccatttcaggctcagctgcccacgacaagaacgacacgacatccttgccc 360 ||||||||||||||||| || ||||||||||| | |||||| || || | ||| || ||| Sbjct: 887 ttcctctcttccatttctggttcagctgcccaggccaagaatgatacaatatctttaccc 828 Query: 361 atctgggcttcagttgcaggagtaccatcttcatactcaatagctccatc 410 ||||| || || || || || ||||||||||||||||| |||| |||| Sbjct: 827 atctgtgcctctgtggcggggacaccatcttcatactcaacagcttcatc 778
>emb|BX824618.1|CNS0A4TF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH60ZA03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1238 Score = 139 bits (70), Expect = 8e-30 Identities = 190/230 (82%) Strand = Plus / Minus Query: 181 tagttgacgacgtccaggaccagcttgcgggacttgaggacagaccacctcatgcgacgg 240 ||||| || ||||| || |||||||||||||||||||| || ||||| | | || | | Sbjct: 1006 tagttaaccacgtcaagaaccagcttgcgggacttgagaaccgaccattttagtcgcctg 947 Query: 241 tagtatgcggcttggagaagagcaagtgacagtaggaagatccatttgacacccatcagt 300 ||||| || |||||||||||||| || || |||||||| |||||||||| |||||||||| Sbjct: 946 tagtaagcagcttggagaagagcgagagagagtaggaatatccatttgaaacccatcagt 887 Query: 301 ttcctctcttccatttcaggctcagctgcccacgacaagaacgacacgacatccttgccc 360 ||||||||||||||||| || ||||||||||| | |||||| || || | ||| || ||| Sbjct: 886 ttcctctcttccatttctggttcagctgcccaggccaagaatgatacaatatctttaccc 827 Query: 361 atctgggcttcagttgcaggagtaccatcttcatactcaatagctccatc 410 ||||| || || || || || ||||||||||||||||| |||| |||| Sbjct: 826 atctgtgcctctgtggcggggacaccatcttcatactcaacagcttcatc 777
>emb|BX823783.1|CNS0A6LU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS75ZC04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1366 Score = 131 bits (66), Expect = 2e-27 Identities = 189/230 (82%) Strand = Plus / Minus Query: 181 tagttgacgacgtccaggaccagcttgcgggacttgaggacagaccacctcatgcgacgg 240 ||||| || ||||| || |||||||||||||||||||| || ||||| | | || | | Sbjct: 1024 tagttaaccacgtcaagaaccagcttgcgggacttgagaaccgaccattttagtcgcctg 965 Query: 241 tagtatgcggcttggagaagagcaagtgacagtaggaagatccatttgacacccatcagt 300 ||||| || |||||||||||||| || || |||||||| |||||||||| |||||||||| Sbjct: 964 tagtaagcagcttggagaagagcgagagagagtaggaatatccatttgagacccatcagt 905 Query: 301 ttcctctcttccatttcaggctcagctgcccacgacaagaacgacacgacatccttgccc 360 ||||||||||||||||| || ||||||||||| | ||||| || || | ||| || ||| Sbjct: 904 ttcctctcttccatttctggttcagctgcccaggcgaagaatgatacaatatctttaccc 845 Query: 361 atctgggcttcagttgcaggagtaccatcttcatactcaatagctccatc 410 ||||| || || || || || ||||||||||||||||| |||| |||| Sbjct: 844 atctgtgcctctgtggcggggacaccatcttcatactcaacagcttcatc 795
>gb|BT014041.1| Lycopersicon esculentum clone 133106F, mRNA sequence Length = 1437 Score = 125 bits (63), Expect = 1e-25 Identities = 177/215 (82%) Strand = Plus / Minus Query: 196 aggaccagcttgcgggacttgaggacagaccacctcatgcgacggtagtatgcggcttgg 255 ||||||||||| || |||||||| ||||||||||||| || | |||||| || ||||| Sbjct: 1066 aggaccagcttacgtgacttgagaacagaccacctcaaacgcctgtagtaagcagcttga 1007 Query: 256 agaagagcaagtgacagtaggaagatccatttgacacccatcagtttcctctcttccatt 315 || || ||||| ||||||| || ||||| |||| ||||||||||| |||||||||||| Sbjct: 1006 agcagtgcaagggacagtacaaatatccacttgaagcccatcagttttctctcttccatt 947 Query: 316 tcaggctcagctgcccacgacaagaacgacacgacatccttgcccatctgggcttcagtt 375 || || ||||| ||||| | || || ||||| ||||| || |||||||| ||||| ||| Sbjct: 946 tctggttcagcagcccaagttaaaaatgacaccacatctttccccatctgagcttctgtt 887 Query: 376 gcaggagtaccatcttcatactcaatagctccatc 410 ||||| ||||||||||||||||| ||| ||||| Sbjct: 886 gcagggacaccatcttcatactcaacagcaccatc 852
>ref|NM_123446.3| Arabidopsis thaliana electron transporter/ electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex AT5G40810 mRNA, complete cds Length = 1366 Score = 119 bits (60), Expect = 8e-24 Identities = 111/128 (86%) Strand = Plus / Minus Query: 268 gacagtaggaagatccatttgacacccatcagtttcctctcttccatttcaggctcagct 327 ||||||| ||| |||||||||| ||||||| ||||||||||||||| || || |||||| Sbjct: 961 gacagtaagaatatccatttgaaccccatcaatttcctctcttccatctctggttcagct 902 Query: 328 gcccacgacaagaacgacacgacatccttgcccatctgggcttcagttgcaggagtacca 387 ||||| |||||||| || || ||||| || |||||||| ||||| ||||||||||| ||| Sbjct: 901 gcccaggacaagaaggatacaacatctttacccatctgtgcttctgttgcaggagttcca 842 Query: 388 tcttcata 395 |||||||| Sbjct: 841 tcttcata 834
>gb|AY116937.1| Arabidopsis thaliana AT5g40810/MHK7_4 mRNA, complete cds Length = 924 Score = 119 bits (60), Expect = 8e-24 Identities = 111/128 (86%) Strand = Plus / Minus Query: 268 gacagtaggaagatccatttgacacccatcagtttcctctcttccatttcaggctcagct 327 ||||||| ||| |||||||||| ||||||| ||||||||||||||| || || |||||| Sbjct: 836 gacagtaagaatatccatttgaaccccatcaatttcctctcttccatctctggttcagct 777 Query: 328 gcccacgacaagaacgacacgacatccttgcccatctgggcttcagttgcaggagtacca 387 ||||| |||||||| || || ||||| || |||||||| ||||| ||||||||||| ||| Sbjct: 776 gcccaggacaagaaggatacaacatctttacccatctgtgcttctgttgcaggagttcca 717 Query: 388 tcttcata 395 |||||||| Sbjct: 716 tcttcata 709
>gb|AY050340.1| Arabidopsis thaliana AT5g40810/MHK7_4 mRNA, complete cds Length = 1238 Score = 119 bits (60), Expect = 8e-24 Identities = 111/128 (86%) Strand = Plus / Minus Query: 268 gacagtaggaagatccatttgacacccatcagtttcctctcttccatttcaggctcagct 327 ||||||| ||| |||||||||| ||||||| ||||||||||||||| || || |||||| Sbjct: 908 gacagtaagaatatccatttgaaccccatcaatttcctctcttccatctctggttcagct 849 Query: 328 gcccacgacaagaacgacacgacatccttgcccatctgggcttcagttgcaggagtacca 387 ||||| |||||||| || || ||||| || |||||||| ||||| ||||||||||| ||| Sbjct: 848 gcccaggacaagaaggatacaacatctttacccatctgtgcttctgttgcaggagttcca 789 Query: 388 tcttcata 395 |||||||| Sbjct: 788 tcttcata 781
>emb|BX829693.1|CNS0A056 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB2ZE01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1241 Score = 119 bits (60), Expect = 8e-24 Identities = 111/128 (86%) Strand = Plus / Minus Query: 268 gacagtaggaagatccatttgacacccatcagtttcctctcttccatttcaggctcagct 327 ||||||| ||| |||||||||| ||||||| ||||||||||||||| || || |||||| Sbjct: 961 gacagtaagaatatccatttgaaccccatcaatttcctctcttccatctctggttcagct 902 Query: 328 gcccacgacaagaacgacacgacatccttgcccatctgggcttcagttgcaggagtacca 387 ||||| |||||||| || || ||||| || |||||||| ||||| ||||||||||| ||| Sbjct: 901 gcccaggacaagaaggatacaacatctttacccatctgtgcttctgttgcaggagttcca 842 Query: 388 tcttcata 395 |||||||| Sbjct: 841 tcttcata 834
>emb|X79597.1|STCYC1 S.tuberosum (Desiree) cyc1 II mRNA. for cytochrome c1 Length = 1014 Score = 117 bits (59), Expect = 3e-23 Identities = 176/215 (81%) Strand = Plus / Minus Query: 196 aggaccagcttgcgggacttgaggacagaccacctcatgcgacggtagtatgcggcttgg 255 ||||||||||| || |||||||| ||||||||||||| || | |||||| || ||||| Sbjct: 769 aggaccagcttccgtgacttgagaacagaccacctcaaacgcctgtagtaagcagcttga 710 Query: 256 agaagagcaagtgacagtaggaagatccatttgacacccatcagtttcctctcttccatt 315 || || ||||| ||||||| || ||||| |||| ||||||||||| ||||||||||| Sbjct: 709 agtagtgcaagggacagtacaaatatccacttgaagcccatcagttttctctcttccatc 650 Query: 316 tcaggctcagctgcccacgacaagaacgacacgacatccttgcccatctgggcttcagtt 375 || || ||||| ||||| | || || ||||| ||||| || |||||||| ||||| ||| Sbjct: 649 tctggttcagcagcccaagttaaaaatgacaccacatctttccccatctgagcttctgtt 590 Query: 376 gcaggagtaccatcttcatactcaatagctccatc 410 ||||| ||||||||||||||||| ||| ||||| Sbjct: 589 gcagggacaccatcttcatactcaacagcaccatc 555
>emb|BX824810.1|CNS0A6Y4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH74ZE04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1267 Score = 113 bits (57), Expect = 5e-22 Identities = 181/221 (81%), Gaps = 1/221 (0%) Strand = Plus / Minus Query: 181 tagttgacgacgtccaggaccagcttgcgggacttgaggacagaccacctcatgcgacgg 240 ||||| || ||||| || |||||||||||||||||||| || ||||| | | || | | Sbjct: 982 tagttaaccacgtcaagaaccagcttgcgggacttgagaaccgaccattttagtcgcctg 923 Query: 241 tagtatgcggcttggagaagagcaagtgacagtaggaagatccatttgacaccca-tcag 299 ||||| || |||||||||||||| || | |||||||| |||||||||| ||||| |||| Sbjct: 922 tagtaagcagcttggagaagagcgagatatagtaggaatatccatttgaaacccaatcag 863 Query: 300 tttcctctcttccatttcaggctcagctgcccacgacaagaacgacacgacatccttgcc 359 |||||||||||||||||| || ||||||||||| | |||||| || || | ||| || || Sbjct: 862 tttcctctcttccatttctggttcagctgcccaggccaagaatgatacaatatctttacc 803 Query: 360 catctgggcttcagttgcaggagtaccatcttcatactcaa 400 |||||| || || || || || ||||||||||||||||| Sbjct: 802 catctgtgcctctgtggcggggacaccatcttcatactcaa 762
>emb|X62124.1|STCYC1G S.tuberosum cycl gene encoding cytochrome c1 Length = 1264 Score = 101 bits (51), Expect = 2e-18 Identities = 177/219 (80%) Strand = Plus / Minus Query: 182 agttgacgacgtccaggaccagcttgcgggacttgaggacagaccacctcatgcgacggt 241 ||||||| || || || |||| |||||| || |||||||||||||| |||| || |||| Sbjct: 1073 agttgacaacatcaagaaccaacttgcgagatttgaggacagaccatctcaaacggcggt 1014 Query: 242 agtatgcggcttggagaagagcaagtgacagtaggaagatccatttgacacccatcagtt 301 |||| || ||||||||||| || || || | | || |||||||||| ||||||||| | Sbjct: 1013 agtaagctgcttggagaagtgcgagagataaaacaaatatccatttgaaacccatcagct 954 Query: 302 tcctctcttccatttcaggctcagctgcccacgacaagaacgacacgacatccttgccca 361 | ||||||||||| || ||||| || ||||| |||||||| || || ||||| || |||| Sbjct: 953 ttctctcttccatctctggctccgcagcccaggacaagaatgagacaacatcttttccca 894 Query: 362 tctgggcttcagttgcaggagtaccatcttcatactcaa 400 |||| || || |||||||| | ||||| |||||||||| Sbjct: 893 tctgtgcctcggttgcagggatgccatcctcatactcaa 855
>gb|L41695.1|PS300038E Eucalyptus globulus bicostata symbiont (F00060) mRNA, ESTun038 Length = 330 Score = 85.7 bits (43), Expect = 1e-13 Identities = 115/139 (82%) Strand = Plus / Minus Query: 280 atccatttgacacccatcagtttcctctcttccatttcaggctcagctgcccacgacaag 339 |||||||||| |||||||| || || |||||||||||||| || || ||||| || ||| Sbjct: 233 atccatttgaatcccatcagctttctttcttccatttcaggttctgcagcccatgataag 174 Query: 340 aacgacacgacatccttgcccatctgggcttcagttgcaggagtaccatcttcatactca 399 || | |||||||| || |||||||| ||||| ||||| || || |||||||||||||| Sbjct: 173 aatgttacgacatctttccccatctgagcttctgttgctggggtcccatcttcatactcg 114 Query: 400 atagctccatccataagca 418 | ||| ||||| ||||||| Sbjct: 113 acagcaccatcaataagca 95
>gb|DQ294620.1| Arachis hypogaea cytochrome c1-like mRNA, partial sequence Length = 615 Score = 77.8 bits (39), Expect = 3e-11 Identities = 99/119 (83%) Strand = Plus / Minus Query: 292 cccatcagtttcctctcttccatttcaggctcagctgcccacgacaagaacgacacgaca 351 ||||||||||| ||||||||||| || || || || ||||| || ||||| ||||| ||| Sbjct: 506 cccatcagttttctctcttccatctccggttcggcagcccaagataagaatgacacaaca 447 Query: 352 tccttgcccatctgggcttcagttgcaggagtaccatcttcatactcaatagctccatc 410 || || |||||||| | |||||| || ||||||||||| ||||| |||| ||| ||||| Sbjct: 446 tctttccccatctgagattcagtggcgggagtaccatcctcatattcaacagcaccatc 388 Score = 60.0 bits (30), Expect = 6e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 184 ttgacgacgtccaggaccagcttgcgggacttgaggacagaccacctcatgcgacggtag 243 |||||||| || || ||||||||||| ||||| || ||||||||||| | |||||||||| Sbjct: 614 ttgacgacatcaagaaccagcttgcgagactttagaacagaccacctaaggcgacggtag 555 Query: 244 ta 245 || Sbjct: 554 ta 553
>dbj|AP000381.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K17E12 Length = 63604 Score = 73.8 bits (37), Expect = 4e-10 Identities = 97/117 (82%) Strand = Plus / Plus Query: 181 tagttgacgacgtccaggaccagcttgcgggacttgaggacagaccacctcatgcgacgg 240 ||||| || ||||| || |||||||||||||||||||| || ||||| | | || | | Sbjct: 20014 tagttaaccacgtcaagaaccagcttgcgggacttgagaaccgaccattttagtcgcctg 20073 Query: 241 tagtatgcggcttggagaagagcaagtgacagtaggaagatccatttgacacccatc 297 ||||| || |||||||||||||| || || |||||||| |||||||||| ||||||| Sbjct: 20074 tagtaagcagcttggagaagagcgagagagagtaggaatatccatttgaaacccatc 20130 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 297 cagtttcctctcttccatttcaggctcagctgcccacgacaagaa 341 ||||||||||||||||||||| || ||||||||||| | |||||| Sbjct: 20428 cagtttcctctcttccatttctggttcagctgcccaggccaagaa 20472
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 67.9 bits (34), Expect = 2e-08 Identities = 85/102 (83%) Strand = Plus / Minus Query: 196 aggaccagcttgcgggacttgaggacagaccacctcatgcgacggtagtatgcggcttgg 255 |||||||||||||| |||||| ||| |||||| ||||||| ||||| ||||| ||||| Sbjct: 41071289 aggaccagcttgcgcgacttgtagacggaccacttcatgcgccggtaatatgcagcttgc 41071230 Query: 256 agaagagcaagtgacagtaggaagatccatttgacacccatc 297 ||||| || || || ||||| || |||||||| || |||||| Sbjct: 41071229 agaagtgcgagggagagtagaaaaatccatttcactcccatc 41071188 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 297 cagtttcctctcttccatttcaggctcagctgcccacgacaagaacgacacgacatcctt 356 |||||| ||||||||||| |||||||| || ||||| ||||||||||| || ||||| || Sbjct: 41071104 cagttttctctcttccatctcaggctccgccgcccatgacaagaacgagacaacatcttt 41071045 Query: 357 gcccatct 364 ||||||| Sbjct: 41071044 tcccatct 41071037 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 363 ctgggcttcagttgcaggagtaccatcttcatactcaatagctccatccataagca 418 ||||||||| || || ||||| |||||||||||||| | |||||||| ||||||| Sbjct: 41070942 ctgggcttctgtagctggagtgccatcttcatactcgactgctccatcaataagca 41070887 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 agattgtacccaaggtatgat 78 ||||||||||||||||||||| Sbjct: 13388369 agattgtacccaaggtatgat 13388389
>dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492G09 Length = 142239 Score = 67.9 bits (34), Expect = 2e-08 Identities = 85/102 (83%) Strand = Plus / Minus Query: 196 aggaccagcttgcgggacttgaggacagaccacctcatgcgacggtagtatgcggcttgg 255 |||||||||||||| |||||| ||| |||||| ||||||| ||||| ||||| ||||| Sbjct: 108219 aggaccagcttgcgcgacttgtagacggaccacttcatgcgccggtaatatgcagcttgc 108160 Query: 256 agaagagcaagtgacagtaggaagatccatttgacacccatc 297 ||||| || || || ||||| || |||||||| || |||||| Sbjct: 108159 agaagtgcgagggagagtagaaaaatccatttcactcccatc 108118 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 297 cagtttcctctcttccatttcaggctcagctgcccacgacaagaacgacacgacatcctt 356 |||||| ||||||||||| |||||||| || ||||| ||||||||||| || ||||| || Sbjct: 108034 cagttttctctcttccatctcaggctccgccgcccatgacaagaacgagacaacatcttt 107975 Query: 357 gcccatct 364 ||||||| Sbjct: 107974 tcccatct 107967 Score = 48.1 bits (24), Expect = 0.023 Identities = 48/56 (85%) Strand = Plus / Minus Query: 363 ctgggcttcagttgcaggagtaccatcttcatactcaatagctccatccataagca 418 ||||||||| || || ||||| |||||||||||||| | |||||||| ||||||| Sbjct: 107872 ctgggcttctgtagctggagtgccatcttcatactcgactgctccatcaataagca 107817
>gb|S66866.1|S66866 Solanum tuberosum cytochrome c1 precursor, gene, complete cds; mitochondrial gene for mitochondrial product Length = 6007 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Minus Query: 182 agttgacgacgtccaggaccagcttgcgggacttgaggacagaccacctcatgcgacggt 241 ||||||| || || ||||||| |||||| || |||||||||||||| |||| || |||| Sbjct: 5541 agttgacaacatcaaggaccaacttgcgagatttgaggacagaccatctcaaacggcggt 5482 Query: 242 agtatgcggcttggagaag 260 |||| || ||||||||||| Sbjct: 5481 agtaagctgcttggagaag 5463 Score = 46.1 bits (23), Expect = 0.091 Identities = 50/59 (84%) Strand = Plus / Minus Query: 304 ctctcttccatttcaggctcagctgcccacgacaagaacgacacgacatccttgcccat 362 ||||||||||| || |||||||| ||||| |||||||| || || ||||| || ||||| Sbjct: 5116 ctctcttccatctctggctcagcagcccatgacaagaatgagacaacatcttttcccat 5058
>dbj|AB011477.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHK7 Length = 78181 Score = 60.0 bits (30), Expect = 6e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 300 tttcctctcttccatttcaggctcagctgcccacgacaagaacgacacgacatccttgcc 359 ||||||||||||||| || || ||||||||||| |||||||| || || ||||| || || Sbjct: 16178 tttcctctcttccatctctggttcagctgcccaggacaagaaggatacaacatctttacc 16119 Query: 360 catctg 365 |||||| Sbjct: 16118 catctg 16113 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 367 gcttcagttgcaggagtaccatcttcata 395 ||||| ||||||||||| ||||||||||| Sbjct: 15991 gcttctgttgcaggagttccatcttcata 15963
>gb|AC185524.1| Medicago truncatula clone mth2-62g23, complete sequence Length = 40651 Score = 58.0 bits (29), Expect = 2e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 297 cagtttcctctcttccatttcaggctcagctgcccacgacaagaacgacacgacatcctt 356 |||||| ||||||||||| ||||| || |||||||| ||||| || ||||| ||||| || Sbjct: 10522 cagttttctctcttccatctcaggttccgctgcccaagacaaaaatgacacaacatcttt 10463 Query: 357 gcccatctg 365 |||||||| Sbjct: 10462 ccccatctg 10454 Score = 46.1 bits (23), Expect = 0.091 Identities = 62/75 (82%) Strand = Plus / Minus Query: 180 ctagttgacgacgtccaggaccagcttgcgggacttgaggacagaccacctcatgcgacg 239 ||||||||| || || || |||| |||||| ||||| || |||||||||| | ||||| Sbjct: 10720 ctagttgacaacatcaagaaccaacttgcgagacttaagaacagaccaccgaagacgacg 10661 Query: 240 gtagtatgcggcttg 254 |||||||||||||| Sbjct: 10660 atagtatgcggcttg 10646 Score = 40.1 bits (20), Expect = 5.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 367 gcttcagttgcaggagtaccatcttcatactcaatagctccatc 410 ||||| || ||||| |||||||||||||| |||| ||| ||||| Sbjct: 10339 gcttcggtagcaggggtaccatcttcatattcaacagcgccatc 10296
>gb|AC138464.19| Medicago truncatula clone mth2-29i23, complete sequence Length = 134105 Score = 58.0 bits (29), Expect = 2e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 297 cagtttcctctcttccatttcaggctcagctgcccacgacaagaacgacacgacatcctt 356 |||||| ||||||||||| ||||| || |||||||| ||||| || ||||| ||||| || Sbjct: 106914 cagttttctctcttccatctcaggttccgctgcccaagacaaaaatgacacaacatcttt 106855 Query: 357 gcccatctg 365 |||||||| Sbjct: 106854 ccccatctg 106846 Score = 58.0 bits (29), Expect = 2e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 297 cagtttcctctcttccatttcaggctcagctgcccacgacaagaacgacacgacatcctt 356 |||||| ||||||||||| ||||| || |||||||| ||||| || ||||| ||||| || Sbjct: 78105 cagttttctctcttccatctcaggttctgctgcccaagacaaaaatgacacaacatcttt 78046 Query: 357 gcccatctg 365 |||||||| Sbjct: 78045 ccccatctg 78037 Score = 46.1 bits (23), Expect = 0.091 Identities = 62/75 (82%) Strand = Plus / Minus Query: 180 ctagttgacgacgtccaggaccagcttgcgggacttgaggacagaccacctcatgcgacg 239 ||||||||| || || || |||| |||||| ||||| || |||||||||| | ||||| Sbjct: 107112 ctagttgacaacatcaagaaccaacttgcgagacttaagaacagaccaccgaagacgacg 107053 Query: 240 gtagtatgcggcttg 254 |||||||||||||| Sbjct: 107052 atagtatgcggcttg 107038 Score = 40.1 bits (20), Expect = 5.6 Identities = 38/44 (86%) Strand = Plus / Minus Query: 367 gcttcagttgcaggagtaccatcttcatactcaatagctccatc 410 ||||| || ||||| |||||||||||||| |||| ||| ||||| Sbjct: 106731 gcttcggtagcaggggtaccatcttcatattcaacagcgccatc 106688
>emb|AL354853.12| Human DNA sequence from clone RP11-555F9 on chromosome 9q22.1-22.33 Contains the 5' end of a novel gene and the 3' end of a novel gene, complete sequence Length = 176422 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 39 cagaggaagaaaacaaaagaga 60 |||||||||||||||||||||| Sbjct: 83078 cagaggaagaaaacaaaagaga 83099
>emb|AL844199.8| Mouse DNA sequence from clone RP23-39F22 on chromosome 4, complete sequence Length = 205589 Score = 44.1 bits (22), Expect = 0.36 Identities = 31/34 (91%) Strand = Plus / Minus Query: 293 ccatcagtttcctctcttccatttcaggctcagc 326 |||||||||||||| ||||||||||| |||||| Sbjct: 36911 ccatcagtttcctcatttccatttcagtctcagc 36878
>gb|AC137924.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0095K08, complete sequence Length = 180999 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 agattgtacccaaggtatgat 78 ||||||||||||||||||||| Sbjct: 84517 agattgtacccaaggtatgat 84537
>gb|AC123047.3| Mus musculus BAC clone RP24-378B22 from chromosome 7, complete sequence Length = 157795 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 288 gacacccatcagtttcctctc 308 ||||||||||||||||||||| Sbjct: 66539 gacacccatcagtttcctctc 66559
>emb|BX927158.14| Zebrafish DNA sequence from clone DKEY-106K1 in linkage group 5, complete sequence Length = 144909 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 66 cccaaggtatgatgggagacaacca 90 |||||||||||||||||||| |||| Sbjct: 34579 cccaaggtatgatgggagaccacca 34603
>gb|AE014823.1| Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence Length = 249943 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 gaggaagaaaacaaaagagat 61 ||||||||||||||||||||| Sbjct: 186971 gaggaagaaaacaaaagagat 186991
>emb|AL590503.11| Mouse DNA sequence from clone RP23-128M23 on chromosome 13, complete sequence Length = 169547 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 269 acagtaggaagatccatttga 289 ||||||||||||||||||||| Sbjct: 112378 acagtaggaagatccatttga 112358
>gb|AC021549.9| Homo sapiens chromosome 18, clone RP11-650P15, complete sequence Length = 183066 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 gtttcctctcttccatttcag 319 ||||||||||||||||||||| Sbjct: 103612 gtttcctctcttccatttcag 103592
>gb|CP000236.1| Ehrlichia chaffeensis str. Arkansas, complete genome Length = 1176248 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 309 ttccatttcaggctcagctgcccac 333 |||||| |||||||||||||||||| Sbjct: 522284 ttccatctcaggctcagctgcccac 522260
>gb|AC151841.5| Mus musculus BAC clone RP23-128P10 from chromosome 7, complete sequence Length = 212484 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 288 gacacccatcagtttcctctc 308 ||||||||||||||||||||| Sbjct: 15284 gacacccatcagtttcctctc 15264
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 agattgtacccaaggtatgat 78 ||||||||||||||||||||| Sbjct: 7913431 agattgtacccaaggtatgat 7913411
>gb|AY177663.1| Homo sapiens desmoglein 4 preproprotein (DSG4) gene, complete cds Length = 37140 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 299 gtttcctctcttccatttcag 319 ||||||||||||||||||||| Sbjct: 29280 gtttcctctcttccatttcag 29300
>dbj|AP003337.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1111_G12 Length = 112664 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 agattgtacccaaggtatgat 78 ||||||||||||||||||||| Sbjct: 32922 agattgtacccaaggtatgat 32942
>dbj|AP003331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1088D01 Length = 146144 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 agattgtacccaaggtatgat 78 ||||||||||||||||||||| Sbjct: 128727 agattgtacccaaggtatgat 128747
>dbj|AP003499.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-178H8, complete sequence Length = 193227 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 aatagaaagaagaaacaatgg 176 ||||||||||||||||||||| Sbjct: 31107 aatagaaagaagaaacaatgg 31087
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 agattgtacccaaggtatgat 78 ||||||||||||||||||||| Sbjct: 7983518 agattgtacccaaggtatgat 7983498
>emb|AL773525.5| Mouse DNA sequence from clone RP23-169L4 on chromosome 2, complete sequence Length = 188772 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 301 ttcctctcttccatttcaggctcag 325 ||||||||| ||||||||||||||| Sbjct: 154671 ttcctctctcccatttcaggctcag 154647
>gb|AE017197.1| Rickettsia typhi str. Wilmington complete genome Length = 1111496 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 309 ttccatttcaggctcagctgccca 332 ||||||||| |||||||||||||| Sbjct: 332080 ttccatttccggctcagctgccca 332057
>gb|AC137511.3| Mus musculus BAC clone RP24-313I8 from chromosome 5, complete sequence Length = 168197 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 cacccatcagtttcctctcttcca 313 |||| ||||||||||||||||||| Sbjct: 123541 caccgatcagtttcctctcttcca 123518
>gb|AC119158.10| Mus musculus chromosome 19, clone RP23-434C14, complete sequence Length = 209459 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 37 agcagaggaagaaaacaaaagaga 60 |||||||||||||||| ||||||| Sbjct: 187590 agcagaggaagaaaactaaagaga 187567
>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome Length = 1485148 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 309 ttccatttcaggctcagctgccca 332 ||||||||| |||||||||||||| Sbjct: 1068514 ttccatttctggctcagctgccca 1068537
>emb|AL365444.11| Human DNA sequence from clone RP11-115P16 on chromosome 1 Contains the 3' UTR of a novel gene (DKFZp761P211), the ITPKB gene for inositol 1,4,5-trisphosphate 3-kinase B, two novel genes, a ribosomal protein S27 (metallopanstimulin 1) (RPS27) pseudogene and a CpG island, complete sequence Length = 181144 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 gggacttgaggacagaccac 228 |||||||||||||||||||| Sbjct: 144667 gggacttgaggacagaccac 144686
>emb|AL133475.14| Human DNA sequence from clone RP3-357D13 on chromosome 6 Contains the 5' end of the ELOVL4 gene for elongation of very long chain fatty acids (FEN1/ELo2, SUR4/ELo3, yeast)-like 4, a GAPD (glyceraldehyde-3-phosphate dehydrogenase) pseudogene, an RPL35A (60S ribosomal protein L35A) pseudogene, the TTK gene for TTK protein kinase and a putative CpG island, complete sequence Length = 119318 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 cagagtagcaaaatatacaa 108 |||||||||||||||||||| Sbjct: 52499 cagagtagcaaaatatacaa 52518
>ref|XM_961529.1| PREDICTED: Tribolium castaneum similar to CG9924-PC, isoform C (LOC655033), mRNA Length = 1563 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 gtttcctctcttccatttca 318 |||||||||||||||||||| Sbjct: 937 gtttcctctcttccatttca 918
>gb|AC145218.29| Medicago truncatula clone mth2-34l18, complete sequence Length = 134519 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 tgttgcaatagaaagaagaa 169 |||||||||||||||||||| Sbjct: 18079 tgttgcaatagaaagaagaa 18098
>gb|AC109821.5| Homo sapiens BAC clone RP11-509D19 from 4, complete sequence Length = 106123 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 atgatgggagacaaccagag 93 |||||||||||||||||||| Sbjct: 20728 atgatgggagacaaccagag 20747
>gb|AC095053.3| Homo sapiens BAC clone RP11-352E8 from 4, complete sequence Length = 112123 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 catctgggcttcagttgcag 379 |||||||||||||||||||| Sbjct: 20710 catctgggcttcagttgcag 20691
>gb|CP000235.1| Anaplasma phagocytophilum HZ, complete genome Length = 1471282 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 310 tccatttcaggctcagctgcccac 333 ||||||||||||||||| |||||| Sbjct: 416165 tccatttcaggctcagcagcccac 416142
>gb|AC008147.31| Homo sapiens 12 BAC RP3-405J10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 115345 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 aaagaagaaacaatggtcac 180 |||||||||||||||||||| Sbjct: 43432 aaagaagaaacaatggtcac 43413
>dbj|AK024933.1| Homo sapiens cDNA: FLJ21280 fis, clone COL01884 Length = 2604 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 aaagaagaaacaatggtcac 180 |||||||||||||||||||| Sbjct: 2178 aaagaagaaacaatggtcac 2197
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 aagaagaaacaatggtcact 181 |||||||||||||||||||| Sbjct: 3750940 aagaagaaacaatggtcact 3750921
>emb|AL133168.6|CNS01DU7 Human chromosome 14 DNA sequence BAC R-187K17 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 195115 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 cagaggaagaaaacaaaaga 58 |||||||||||||||||||| Sbjct: 52201 cagaggaagaaaacaaaaga 52220
>emb|AL669851.8| Mouse DNA sequence from clone RP23-18K13 on chromosome X, complete sequence Length = 204557 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 agaggaagaaaacaaaagag 59 |||||||||||||||||||| Sbjct: 22475 agaggaagaaaacaaaagag 22494 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,654,179 Number of Sequences: 3902068 Number of extensions: 4654179 Number of successful extensions: 102877 Number of sequences better than 10.0: 67 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102551 Number of HSP's gapped (non-prelim): 316 length of query: 418 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 396 effective length of database: 17,147,199,772 effective search space: 6790291109712 effective search space used: 6790291109712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)