>UPS2_ARATH (Q9ZQ89) Ureide permease 2 (AtUPS2)|
          Length = 398

 Score = 60.5 bits (145), Expect = 1e-09
 Identities = 29/49 (59%), Positives = 33/49 (67%)
 Frame = -1

Query: 324 LPMVSTFWGVVLFGEYXXXXXXXXXXXXSMLFMFVVPMSVLMASSAHRK 178
           LP+VSTFWGVVLFGEY             MLFMF+  ++VLMASS HRK
Sbjct: 350 LPLVSTFWGVVLFGEYRRSSRKTYLLLFCMLFMFISAVAVLMASSGHRK 398

>UPS1_ARATH (Q9ZPR7) Ureide permease 1 (AtUPS1)|
          Length = 390

 Score = 60.1 bits (144), Expect = 1e-09
 Identities = 28/49 (57%), Positives = 34/49 (69%)
 Frame = -1

Query: 324 LPMVSTFWGVVLFGEYXXXXXXXXXXXXSMLFMFVVPMSVLMASSAHRK 178
           LP+VSTFWG++LFGEY            SML MF+V ++VLMASS HRK
Sbjct: 342 LPLVSTFWGILLFGEYRRSSRKTYTLLISMLLMFIVAVAVLMASSGHRK 390

>UPS4_ARATH (Q9ZQ88) Ureide permease 4 (AtUPS4)|
          Length = 401

 Score = 58.9 bits (141), Expect = 3e-09
 Identities = 28/49 (57%), Positives = 33/49 (67%)
 Frame = -1

Query: 324 LPMVSTFWGVVLFGEYXXXXXXXXXXXXSMLFMFVVPMSVLMASSAHRK 178
           LP+VSTFWG+VLFGEY            SML MFV  +++LMASS HRK
Sbjct: 353 LPLVSTFWGIVLFGEYRKSSKRTYALLVSMLAMFVAAVAILMASSGHRK 401

>UPS5_ARATH (Q93Z75) Ureide permease 5 (AtUPS5)|
          Length = 413

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 23/49 (46%), Positives = 29/49 (59%)
 Frame = -1

Query: 324 LPMVSTFWGVVLFGEYXXXXXXXXXXXXSMLFMFVVPMSVLMASSAHRK 178
           LP+VSTFWG+ LFGEY             ML MF V + +LMAS+  R+
Sbjct: 361 LPLVSTFWGIYLFGEYRRSSTRTYALLVGMLVMFTVAVGLLMASAGERE 409

>ARGC1_PSEPK (Q88QQ6) N-acetyl-gamma-glutamyl-phosphate reductase 1 (EC|
           1.2.1.38) (AGPR 1) (N-acetyl-glutamate semialdehyde
           dehydrogenase 1) (NAGSA dehydrogenase 1)
          Length = 344

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
 Frame = -3

Query: 316 GEHVLGRGAVRGVPEVVEEDVHAAGEHALHVCRPHVRAHGLLRAQEAALTQPTLVM---- 149
           G   L + AV G+PEV  E +  A   A+  C P     G L   EA L  P+ ++    
Sbjct: 119 GAPELLKDAVYGLPEVNREKIRQARLIAVPGCYPTATQLGFLPLLEAGLADPSRLIADCK 178

Query: 148 -------HGMAIGSLDSDGREASKFFDEDG 80
                   G A+GSL  +  E+ K +   G
Sbjct: 179 SGVSGAGRGAAVGSLFCEAGESMKAYAVKG 208

>ARGC_PSESM (Q889Z3) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)|
           (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase)
           (NAGSA dehydrogenase)
          Length = 344

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
 Frame = -3

Query: 316 GEHVLGRGAVRGVPEVVEEDVHAAGEHALHVCRPHVRAHGLLRAQEAALTQPTLVM---- 149
           G   L + AV G+PEV  E +  A   A+  C P     G L   EA +   T ++    
Sbjct: 119 GAPELLQDAVYGLPEVNREQIRNARLIAVPGCYPTATQLGFLPLLEAGIADNTRLIADCK 178

Query: 148 -------HGMAIGSLDSDGREASKFFDEDG 80
                   G+ IGSL S+  E+ K +   G
Sbjct: 179 SGVSGAGRGLNIGSLYSEANESFKAYAVKG 208

>IRS1_HCMVA (P09715) Protein IRS1 (HQRF1)|
          Length = 846

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 27/82 (32%), Positives = 35/82 (42%)
 Frame = -3

Query: 295 GAVRGVPEVVEEDVHAAGEHALHVCRPHVRAHGLLRAQEAALTQPTLVMHGMAIGSLDSD 116
           GAV     V  +   AAG  A  +C P+  AH ++ A  AA   PT++     +GS    
Sbjct: 396 GAVGSAVPVPPQPYGAAGGGA--ICVPNADAHAVVGADAAAAAAPTVM-----VGSTAMA 448

Query: 115 GREASKFFDEDGCCVNLDECDA 50
           G  AS         V LDE  A
Sbjct: 449 GPAASGTVPRAMLVVLLDELGA 470

>TRS1_HCMVA (P09695) Protein HHLF1|
          Length = 788

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 27/82 (32%), Positives = 35/82 (42%)
 Frame = -3

Query: 295 GAVRGVPEVVEEDVHAAGEHALHVCRPHVRAHGLLRAQEAALTQPTLVMHGMAIGSLDSD 116
           GAV     V  +   AAG  A  +C P+  AH ++ A  AA   PT++     +GS    
Sbjct: 396 GAVGSAVPVPPQPYGAAGGGA--ICVPNADAHAVVGADAAAAAAPTVM-----VGSTAMA 448

Query: 115 GREASKFFDEDGCCVNLDECDA 50
           G  AS         V LDE  A
Sbjct: 449 GPAASGTVPRAMLVVLLDELGA 470

>GCH1_RHOBA (Q7UJJ7) GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I)|
          Length = 229

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 71  YTTSVLIEELASLSAVAIQAPDRHAMHDQRWLRQSGFLCAEEAM 202
           +T + LIE+  S   VA+     H+    R +R+ G LC   AM
Sbjct: 163 HTVANLIEDRLSARGVAVVVESTHSCMTMRGIRKPGSLCLTSAM 206

>SYL_HAEIN (P43827) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 861

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = -3

Query: 301 GRGAVRGVPEVVEEDVHAAGEHALHVCRPHVRAHGLLRAQEAALTQPTLVMHGMAIGSLD 122
           G GAV  VP   + D   A +++L    P  +    L  +E  LT+   V HG  + S +
Sbjct: 331 GTGAVMAVPAHDQRDFEFAQKYSL----PIKQVIAPLADEEIDLTKQAFVEHGKLVNSDE 386

Query: 121 SDGREASKFFD 89
            DG+     F+
Sbjct: 387 FDGKNFDGAFN 397

>SYL_HAEI8 (Q4QLY8) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 861

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = -3

Query: 301 GRGAVRGVPEVVEEDVHAAGEHALHVCRPHVRAHGLLRAQEAALTQPTLVMHGMAIGSLD 122
           G GAV  VP   + D   A +++L +     +    +  +E  LT+   V HG  + S +
Sbjct: 331 GTGAVMAVPAHDQRDFEFAQKYSLQI----KQVIEPIADEEIDLTKQAFVEHGKLVNSAE 386

Query: 121 SDGREASKFFD 89
            DG++    F+
Sbjct: 387 FDGKDFDGAFN 397

>TDPZ2_MOUSE (Q717B2) TD and POZ domain-containing protein 2|
          Length = 364

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = -3

Query: 163 PTLVMHGMA---IGSLDSDGREASKFFDEDGCCVNLDECDACHIL 38
           PTL  H MA   + + D  G E  K   ED  C NL   +A H L
Sbjct: 252 PTLHSHSMACDVLAAADKYGLEGLKVICEDSLCRNLSVENAAHTL 296

>BAIP3_HUMAN (O94812) BAI1-associated protein 3 (BAP3)|
          Length = 1187

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -3

Query: 316  GEHVLGRGAVRGVPEVVEEDVHAAGEHA-LHVCRPHVRAHGLLRAQE 179
            GE  LG G V GV          AG+   LH+CRP  +    LR  E
Sbjct: 1116 GEAALGLGGVTGVARPQVGGGARAGQPVTLHLCRPRAQVRSALRRLE 1162

>SYL_SHEON (Q8EHP4) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 859

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 20/63 (31%), Positives = 28/63 (44%)
 Frame = -3

Query: 301 GRGAVRGVPEVVEEDVHAAGEHALHVCRPHVRAHGLLRAQEAALTQPTLVMHGMAIGSLD 122
           G GAV  VP   + D   A ++ L +      A G L   EAA T+  ++ +      LD
Sbjct: 331 GTGAVMSVPGHDQRDYEFAKKYHLPIEAVIKPAEGDLDISEAAYTEKGILFNSGEFDGLD 390

Query: 121 SDG 113
            DG
Sbjct: 391 FDG 393

>SYL_SYMTH (Q67SB4) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 861

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -3

Query: 301 GRGAVRGVPEVVEEDVHAAGEHALHVCRPHVRAHGLLRAQE--AALTQPTLVMH 146
           G GAV GVP   + D   A ++ L V        G LRA+E  AA  +P ++++
Sbjct: 340 GTGAVMGVPAHDQRDFEFAQKYGLPVKVVIQNPEGTLRAEEMTAAYVEPGIMVN 393

>NANE_CORGL (Q8NMD0) Putative N-acetylmannosamine-6-phosphate 2-epimerase (EC|
           5.1.3.9) (ManNAc-6-P epimerase)
          Length = 232

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 80  SVLIEELASLSAVAIQAPDRHAMHDQRWLRQSGFLCAE 193
           S L  +L     V++QAPD HAM D   L      C +
Sbjct: 8   SKLYAQLQGQLIVSVQAPDGHAMRDTHTLTHVAAACVD 45

>YDCO_ECOLI (P76103) Inner membrane protein ydcO|
          Length = 391

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 98  LASLSAVAIQAPDRHAMHDQRWL 166
           +A+++A   Q+P+ H   DQRWL
Sbjct: 267 IAAITAAICQSPEAHPDKDQRWL 289

>SYL_SYNEL (Q8DH61) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 857

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -3

Query: 301 GRGAVRGVPEVVEEDVHAAGEHALHVCRPHVRAHGLLRAQ-EAALTQPTLVMHGMAIGSL 125
           G GAV GVP   E D   A  H L + +  +   G    +  AA T+P  +++      +
Sbjct: 334 GTGAVMGVPAHDERDFQFAKAHRLPIRQVIIPPDGKASTRLRAAYTEPGKLINSGQFDGM 393

Query: 124 DS 119
           DS
Sbjct: 394 DS 395

>ENGC_RALSO (Q8Y0V3) Probable GTPase engC (EC 3.6.1.-)|
          Length = 318

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -3

Query: 271 VVEEDVHAAGEHALHVCRPHVRAHGLLRAQEAALTQPTLVMHGMAIGSLDSDGREASKFF 92
           VVE  VHAA E A  V   HV     +   ++ + + +L+   + I  +D+  RE S+  
Sbjct: 158 VVELSVHAAPEAAHAVLAAHVAGRSSILIGQSGMGKSSLL--NLLIPGVDAQTREISEKL 215

Query: 91  D 89
           D
Sbjct: 216 D 216

>DUS_RHILP (P41504) Probable tRNA-dihydrouridine synthase (EC 1.-.-.-)|
          Length = 317

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 147 MAWRSGAWIATAERLASSSMRTDVV*TWTSAMHATSYR 34
           +AWR GA +   E +AS  +  D   +W S + A  +R
Sbjct: 23  LAWRFGAGLVVTEMVASRELVNDTAESW-SRLKAAGFR 59

>ROO_DESGI (Q9F0J6) Rubredoxin-oxygen oxidoreductase (EC 1.-.-.-) (ROO)|
           (Rubredoxin oxidase)
          Length = 402

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -3

Query: 169 TQPTLVMHGMAIGSLDSDGREASKFFDEDGCCVNLDECDACH 44
           T   ++ +     S +   R  ++ F ++GC V L  C ACH
Sbjct: 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACH 293


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,851,643
Number of Sequences: 219361
Number of extensions: 595764
Number of successful extensions: 1900
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1898
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)