ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart58b10 |
|---|---|
| Clone Library Name | barley_pub |
>KALM_CHICK (P33005) Anosmin-1 precursor (Kallmann syndrome protein homolog)| Length = 675 Score = 31.2 bits (69), Expect = 0.65 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +2 Query: 221 RTGDLPSALPHQYHLNPHHNRPWK 292 RT DLP LPH+ HL HH +K Sbjct: 646 RTPDLPPFLPHRPHLKQHHPHHYK 669
>COX2_BRARE (Q9MIY7) Cytochrome c oxidase subunit 2 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide II) Length = 230 Score = 29.6 bits (65), Expect = 1.9 Identities = 21/79 (26%), Positives = 34/79 (43%) Frame = +3 Query: 66 YESHSYTSITNSEICGSGTDTSLYTRGGLHHLQSTSHQQGNRMSPKRLLFRAEQEICLQL 245 Y S+ YT N E T T GG L++ + SP R+L AE L Sbjct: 105 YWSYEYTDYENLEFDSYMVPTQDLTPGGFRLLETDHRMVVPKESPIRILVSAED--VLHS 162 Query: 246 YHISTTSIRITTVHGNISE 302 + + + I++ V G +++ Sbjct: 163 WAVPSLGIKMDAVPGRLNQ 181
>ANI3_CAEEL (Q9XWN6) Anillin-like protein 3| Length = 709 Score = 29.6 bits (65), Expect = 1.9 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 10/65 (15%) Frame = +2 Query: 101 RNLRVWHRYESLH*RGATSF------TVHEP-PARQQDVTK---TALVQSRTGDLPSALP 250 + + +WH+Y SL RGA F VHE P Q D+TK ++ +SR ++ Sbjct: 605 KKVPIWHKYWSLLHRGAILFWSTPQEEVHEKVPIFQIDLTKCTNNSIEESR--EMSQGAE 662 Query: 251 HQYHL 265 H++H+ Sbjct: 663 HEFHI 667
>ZIMP7_HUMAN (Q8NF64) PIAS-like protein Zimp7| Length = 920 Score = 29.3 bits (64), Expect = 2.5 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%) Frame = +2 Query: 158 FTVHEPPARQQDVTKTALVQSR--TGDLPSALPHQYHLNPHHNRPWKHLRTNN 310 FT PP Q ++L+ S T LPS + HL+P HN L T+N Sbjct: 774 FTPGPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSN 826
>IL12B_MESAU (Q8CJE6) Interleukin-12 beta chain precursor (IL-12B) (IL-12 p40)| (Cytotoxic lymphocyte maturation factor 40 kDa subunit) (CLMF p40) Length = 327 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/49 (32%), Positives = 25/49 (51%) Frame = +3 Query: 81 YTSITNSEICGSGTDTSLYTRGGLHHLQSTSHQQGNRMSPKRLLFRAEQ 227 +TS NSE GSG ++ + + Q T H+ G +S RLL ++ Sbjct: 60 WTSDKNSEAVGSGKTLTIQVKEFSNAGQYTCHKGGKTLSHSRLLLHKKE 108
>LECT1_BRARE (P58239) Chondromodulin-1 precursor (Chondromodulin-I) (ChM-I)| (Leukocyte cell-derived chemotaxin 1) [Contains: Chondrosurfactant protein (CH-SP)] Length = 286 Score = 28.9 bits (63), Expect = 3.2 Identities = 20/66 (30%), Positives = 30/66 (45%) Frame = +2 Query: 80 IYQHHKFRNLRVWHRYESLH*RGATSFTVHEPPARQQDVTKTALVQSRTGDLPSALPHQY 259 IY HH + + R + R TS V+ PAR+++ T +A + TG P Sbjct: 154 IYWHHPANSRALRKRRSATRMRRQTSAGVNRQPARRRNSTASARDERPTG------PEYN 207 Query: 260 HLNPHH 277 NP+H Sbjct: 208 PENPYH 213
>DEOR_ECOLI (P0ACK5) Deoxyribose operon repressor| Length = 252 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/42 (38%), Positives = 20/42 (47%) Frame = +1 Query: 139 LEGGYIIYSPRATSKATGCHQNGSCSEQNRRFAFSSTTSVPP 264 L GGYI+ PR+ S Q E+ RR A + T V P Sbjct: 51 LLGGYIVLEPRSASHYLLSDQKSRLVEEKRRAAKLAATLVEP 92
>DEOR_ECOL6 (P0ACK6) Deoxyribose operon repressor| Length = 252 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/42 (38%), Positives = 20/42 (47%) Frame = +1 Query: 139 LEGGYIIYSPRATSKATGCHQNGSCSEQNRRFAFSSTTSVPP 264 L GGYI+ PR+ S Q E+ RR A + T V P Sbjct: 51 LLGGYIVLEPRSASHYLLSDQKSRLVEEKRRAAKLAATLVEP 92
>DEOR_ECO57 (P0ACK7) Deoxyribose operon repressor| Length = 252 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/42 (38%), Positives = 20/42 (47%) Frame = +1 Query: 139 LEGGYIIYSPRATSKATGCHQNGSCSEQNRRFAFSSTTSVPP 264 L GGYI+ PR+ S Q E+ RR A + T V P Sbjct: 51 LLGGYIVLEPRSASHYLLSDQKSRLVEEKRRAAKLAATLVEP 92
>HNF6_RAT (P70512) Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family| member 1) Length = 465 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 4/58 (6%) Frame = +2 Query: 173 PPARQQDVTKTALVQSRT----GDLPSALPHQYHLNPHHNRPWKHLRTNNS*DGLHTI 334 PP T T L + + PH +H + HH+ P H R + G T+ Sbjct: 94 PPGMSMPTTYTTLTPLQPLPPISTVSDKFPHHHHHHHHHHHPHHHQRLAGNVSGSFTL 151
>HNF6_MOUSE (O08755) Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family| member 1) Length = 465 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 4/58 (6%) Frame = +2 Query: 173 PPARQQDVTKTALVQSRT----GDLPSALPHQYHLNPHHNRPWKHLRTNNS*DGLHTI 334 PP T T L + + PH +H + HH+ P H R + G T+ Sbjct: 94 PPGMSMPTTYTTLTPLQPLPPISTVSDKFPHHHHHHHHHHHPHHHQRLAGNVSGSFTL 151
>HNF6_HUMAN (Q9UBC0) Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family| member 1) Length = 465 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 4/58 (6%) Frame = +2 Query: 173 PPARQQDVTKTALVQSRT----GDLPSALPHQYHLNPHHNRPWKHLRTNNS*DGLHTI 334 PP T T L + + PH +H + HH+ P H R + G T+ Sbjct: 94 PPGMSMPTTYTTLTPLQPLPPISTVSDKFPHHHHHHHHHHHPHHHQRLAGNVSGSFTL 151
>ZN230_HUMAN (Q9UIE0) Zinc finger protein 230 (Zinc finger protein FDZF2)| Length = 474 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Frame = +3 Query: 21 EICGSGI-FGSDINR*YESHSYTSITNSEICGSGTDTSL 134 EICG S +NR Y H+ ++ E CG G SL Sbjct: 283 EICGKSFCLRSSLNRHYMVHTAEKLSKCEECGKGFTDSL 321
>KALM_COTJA (Q90369) Anosmin-1 precursor (Kallmann syndrome protein homolog)| Length = 674 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +2 Query: 221 RTGDLPSALPHQYHLNPHHNR 283 RT DLP LPH+ HL H +R Sbjct: 646 RTPDLPPFLPHRPHLKHHPHR 666
>CNC_DROME (P20482) Segmentation protein cap'n'collar| Length = 1383 Score = 27.7 bits (60), Expect = 7.2 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +2 Query: 233 LPSALPHQYHLNPHHNRPWKH 295 L SA+P +H +PHH P H Sbjct: 580 LQSAVPSYHHPHPHHGHPHAH 600
>TSN31_PONPY (Q5RAP8) Tetraspanin-31 (Tspan-31) (Sarcoma amplified sequence| homolog) Length = 210 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = -1 Query: 229 SCSALNKSRFGDILLPCWWLVDCK 158 SC A+N+S+ D++ WW++ K Sbjct: 95 SCLAINRSKQADVINASWWVMSNK 118
>DOT6_YEAST (P40059) Disrupter of telomere silencing protein 6| Length = 670 Score = 27.3 bits (59), Expect = 9.4 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 7/48 (14%) Frame = +2 Query: 191 DVTKTALVQSRTGD-------LPSALPHQYHLNPHHNRPWKHLRTNNS 313 +VT T +V + LP+ALPH H + HH+ K L+ ++ Sbjct: 199 NVTPTTIVSNAASSMPFAPPTLPAALPHHPHQHLHHHPHHKTLKPRSN 246
>ETV6_HUMAN (P41212) Transcription factor ETV6 (ETS-related protein Tel1) (Tel)| (ETS translocation variant 6) Length = 452 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/60 (30%), Positives = 31/60 (51%) Frame = +2 Query: 149 ATSFTVHEPPARQQDVTKTALVQSRTGDLPSALPHQYHLNPHHNRPWKHLRTNNS*DGLH 328 A+S + +P + +Q+ T+ + +PS + H LNP H+ +K R + DGLH Sbjct: 247 ASSESHPKPSSPRQESTRVIQL------MPSPIMHPLILNPRHSVDFKQSRLSE--DGLH 298
>WDR75_BRARE (Q7ZVR1) WD-repeat protein 75| Length = 832 Score = 27.3 bits (59), Expect = 9.4 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Frame = -1 Query: 235 QISCSALNKSRFGDILLPCWWLVDC--K*CSPPLV*RLVSVPDPQISEFVMLVYE*DSYH 62 ++SCS S LL CW L+ C + + V RL S DP +E H Sbjct: 547 RLSCSKYLLSTTTKNLLCCWNLLTCALEWSTSVDVSRLQS--DPLSENVAAFSFESKHTH 604 Query: 61 LFMSDPKMPDPQISE 17 LF+ P P P S+ Sbjct: 605 LFVFKPSEPRPLFSQ 619 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,239,686 Number of Sequences: 219361 Number of extensions: 1099394 Number of successful extensions: 2626 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2532 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2621 length of database: 80,573,946 effective HSP length: 96 effective length of database: 59,515,290 effective search space used: 1428366960 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
