ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart58b08 |
|---|---|
| Clone Library Name | barley_pub |
>7SBG2_SOYBN (Q8RVH5) Basic 7S globulin 2 precursor (Bg) (SBg7S) [Contains:| Basic 7S globulin 2 high-kDa subunit; Basic 7S globulin 2 low-kDa subunit] Length = 433 Score = 45.1 bits (105), Expect = 5e-05 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 5/86 (5%) Frame = -1 Query: 319 PNVVLALD--GGGEWAMTGKNSMVDVKPGTACVAFVEMEAGDGGAPAVILGGAQMEDFVL 146 P+V L +D G W ++G++ MV +PG C+ M G V LG Q+E+ ++ Sbjct: 344 PSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGV--MNGGMQPRAEVTLGTRQLEEKLM 401 Query: 145 DFDMEKKRLGFIRL---PHFTGCGNL 77 FD+ + R+GF H CG+L Sbjct: 402 VFDLARSRVGFSTSSLHSHGVKCGDL 427
>7SB1_SOYBN (P13917) Basic 7S globulin precursor (Bg) (SBg7S) [Contains: Basic| 7S globulin high-kDa subunit; Basic 7S globulin low-kDa subunit] Length = 427 Score = 43.9 bits (102), Expect = 1e-04 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Frame = -1 Query: 319 PNVVLALD--GGGEWAMTGKNSMVDVKPGTACVAFVEMEAGDGGAPAVILGGAQMEDFVL 146 P+V L +D G W ++G++ MV +PG C+ M G + LG Q+E+ ++ Sbjct: 338 PSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGV--MNGGMQPRAEITLGARQLEENLV 395 Query: 145 DFDMEKKRLGF 113 FD+ + R+GF Sbjct: 396 VFDLARSRVGF 406
>ASP3_CAEEL (P55956) Aspartic protease 3 precursor (EC 3.4.23.-)| Length = 398 Score = 32.0 bits (71), Expect = 0.40 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%) Frame = -1 Query: 325 SVPNVVLALDGGGEWAMTGKNSMVDVKPG----TACVAFVEMEAGDGGAPAVILGGAQME 158 S+PN+ L GG + + GK+ ++ + G T F+ M+ P ILG + Sbjct: 318 SLPNITFNL-GGQNFDLQGKDYILQMSNGNGGSTCLSGFMGMDIPAPAGPLWILGDVFIG 376 Query: 157 DFVLDFDMEKKRLGF 113 F FD KR+GF Sbjct: 377 RFYSVFDHGNKRVGF 391
>CATD_BOVIN (P80209) Cathepsin D precursor (EC 3.4.23.5)| Length = 390 Score = 30.0 bits (66), Expect = 1.5 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Frame = -1 Query: 325 SVPNVVLALDGGGEWAMTGKNSMVDVKPG--TACVA-FVEMEAGDGGAPAVILGGAQMED 155 S+P V + L GG ++A++ ++ + V T C++ F+ M+ G P ILG + Sbjct: 312 SLPEVTVKL-GGKDYALSPEDYALKVSQAETTVCLSGFMGMDIPPPGGPLWILGDVFIGR 370 Query: 154 FVLDFDMEKKRLG 116 + FD ++ R+G Sbjct: 371 YYTVFDRDQNRVG 383
>ASPR_HORVU (P42210) Phytepsin precursor (EC 3.4.23.40) (Aspartic proteinase)| [Contains: Phytepsin 32 kDa subunit; Phytepsin 29 kDa subunit; Phytepsin 16 kDa subunit; Phytepsin 11 kDa subunit] Length = 508 Score = 29.6 bits (65), Expect = 2.0 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Frame = -1 Query: 325 SVPNVVLALDGGGEWAMTGKNSMVDVKPGTA--CVA-FVEMEAGDGGAPAVILGGAQMED 155 S+P++ + GG ++A+ + ++ V G A C++ F M+ P ILG M Sbjct: 432 SMPDIEFTI-GGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGP 490 Query: 154 FVLDFDMEKKRLGFIR 107 + FD K R+GF + Sbjct: 491 YHTVFDYGKLRIGFAK 506
>CATD_PIG (P00795) Cathepsin D precursor (EC 3.4.23.5) [Contains: Cathepsin D| light chain; Cathepsin D heavy chain] Length = 345 Score = 29.6 bits (65), Expect = 2.0 Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Frame = -1 Query: 325 SVPNVVLALDGGGEWAMTGKNSMVDVKPG--TACVA-FVEMEAGDGGAPAVILGGAQMED 155 S+P+V + L GG ++ ++ +N + V T C++ F+ M+ G P ILG + Sbjct: 269 SLPDVTVTL-GGKKYKLSSENYTLKVSQAGQTICLSGFMGMDIPPPGGPLWILGDVFIGR 327 Query: 154 FVLDFDMEKKRLG 116 + FD + R+G Sbjct: 328 YYTVFDRDLNRVG 340
>ASPR1_ORYSA (Q42456) Aspartic proteinase oryzasin-1 precursor (EC 3.4.23.-)| Length = 509 Score = 28.9 bits (63), Expect = 3.4 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Frame = -1 Query: 325 SVPNVVLALDGGGEWAMTGKNSMVDVKPGTA--CVA-FVEMEAGDGGAPAVILGGAQMED 155 S+P + + GG ++A+ + ++ V G A C++ F M+ P ILG M Sbjct: 433 SMPEISFTI-GGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGA 491 Query: 154 FVLDFDMEKKRLGFIR 107 + FD K R+GF + Sbjct: 492 YHTVFDYGKMRVGFAK 507
>CATD_CHICK (Q05744) Cathepsin D precursor (EC 3.4.23.5) [Contains: Cathepsin D| light chain; Cathepsin D heavy chain] Length = 398 Score = 28.9 bits (63), Expect = 3.4 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Frame = -1 Query: 325 SVPNVVLALDGGGEWAMTGKNSM--VDVKPGTACVA-FVEMEAGDGGAPAVILGGAQMED 155 S+P V L L GG + +TG+ + V + T C++ F ++ G P ILG + Sbjct: 322 SLPVVTLML-GGKPYQLTGEQYVFKVSAQGETICLSGFSGLDVPPPGGPLWILGDVFIGP 380 Query: 154 FVLDFDMEKKRLGFIR 107 + FD + +GF + Sbjct: 381 YYTVFDRDNDSVGFAK 396
>FSH_DROME (P13709) Homeotic protein female sterile (Fragile-chorion membrane| protein) Length = 2038 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = +3 Query: 183 TAGAPPSPASISTNATHAVPGLTST 257 TAG PS IST H VPG T+T Sbjct: 249 TAGGAPSIPPISTMPPHTVPGSTNT 273
>CATD_MOUSE (P18242) Cathepsin D precursor (EC 3.4.23.5)| Length = 410 Score = 28.9 bits (63), Expect = 3.4 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 3/74 (4%) Frame = -1 Query: 325 SVPNVVLALDGGGEWAMTGKNSMVDVKPG--TACVA-FVEMEAGDGGAPAVILGGAQMED 155 S+P V L L GG + + ++ V G T C++ F+ M+ P ILG + Sbjct: 332 SLPTVYLKL-GGKNYELHPDKYILKVSQGGKTICLSGFMGMDIPPPSGPLWILGDVFIGS 390 Query: 154 FVLDFDMEKKRLGF 113 + FD + R+GF Sbjct: 391 YYTVFDRDNNRVGF 404
>CATD_CLUHA (Q9DEX3) Cathepsin D precursor (EC 3.4.23.5)| Length = 396 Score = 28.9 bits (63), Expect = 3.4 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Frame = -1 Query: 295 GGGEWAMTGKNSMVDVKPG--TACVA-FVEMEAGDGGAPAVILGGAQMEDFVLDFDMEKK 125 GG +++TG+ ++ G T C++ + +E P ILG + + FD E Sbjct: 329 GGKTYSLTGEQYVLKESQGGKTICLSGLMGLEIPPPAGPLWILGDVFIGQYYTVFDRESN 388 Query: 124 RLGFIR 107 R+GF + Sbjct: 389 RVGFAK 394
>CATD_CANFA (Q4LAL9) Cathepsin D precursor (EC 3.4.23.5)| Length = 410 Score = 28.9 bits (63), Expect = 3.4 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 3/73 (4%) Frame = -1 Query: 325 SVPNVVLALDGGGEWAMTGKNSMVDVKPG--TACVA-FVEMEAGDGGAPAVILGGAQMED 155 ++P+V L L GG + ++ ++ + V G T C++ F+ M+ G P ILG + Sbjct: 332 TLPDVTLKL-GGKLYKLSSEDYTLKVSQGGKTICLSGFMGMDIPPPGGPLWILGDVFIGC 390 Query: 154 FVLDFDMEKKRLG 116 + FD ++ R+G Sbjct: 391 YYTVFDRDQNRVG 403
>OTX1_HUMAN (P32242) Homeobox protein OTX1| Length = 354 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/50 (30%), Positives = 22/50 (44%) Frame = +3 Query: 114 NPXXXXXXXXXXXXXXIWAPPRITAGAPPSPASISTNATHAVPGLTSTIE 263 NP IW+P I+ G+ +PAS+S A P TS ++ Sbjct: 160 NPVAAASSLSTPAASSIWSPASISPGS--APASVSVPEPLAAPSNTSCMQ 207
>Y1408_METKA (Q8TVI1) UPF0245 protein MK1408| Length = 402 Score = 28.5 bits (62), Expect = 4.4 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = -1 Query: 262 SMVDVKPGTACVAFVEMEAGDG 197 S+VD+KPG +A+VE E G G Sbjct: 367 SVVDLKPGDKVLAYVETEEGKG 388
>CX6A1_MOUSE (P43024) Cytochrome c oxidase polypeptide VIa-liver, mitochondrial| precursor (EC 1.9.3.1) Length = 111 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = +2 Query: 176 EDHRRRPAVAGLHLHERNARRPWLDVHHRVLPGHRP 283 E+H R P VA HL R PW D +H + H P Sbjct: 66 EEHERPPFVAYPHLRIRTKPFPWGDGNHTLF--HNP 99
>DGA1_SCHPO (O74850) Diacylglycerol O-acyltransferase 1 (EC 2.3.1.20)| (Diglyceride acyltransferase) Length = 345 Score = 28.1 bits (61), Expect = 5.7 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%) Frame = -1 Query: 235 ACVAFVEMEAGD------GGAPAVILGGAQMEDFVLDFDMEKKRLGFIRLPHFTG 89 +CV+ + + GD GGA +L + VL KKR GF++L TG Sbjct: 178 SCVSILSRKPGDSVLIVIGGAQESLLSRPGQNNLVL-----KKRFGFVKLAFLTG 227
>GATA_ARCFU (O27955) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 457 Score = 27.7 bits (60), Expect = 7.5 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = -1 Query: 187 AVILGGAQMEDFVLDFDMEKKRLGFIRLPH 98 A+I+G A M++F + E G +R PH Sbjct: 103 AIIIGKANMDEFAMGTTTETSYFGVVRNPH 132
>RNH2_THIDA (Q3SKM7) Ribonuclease HII (EC 3.1.26.4) (RNase HII)| Length = 204 Score = 27.7 bits (60), Expect = 7.5 Identities = 10/15 (66%), Positives = 10/15 (66%) Frame = -2 Query: 324 RCPTWCWRSTAGVNG 280 RCP W WRS A V G Sbjct: 115 RCPEWTWRSQAVVQG 129
>ABP2_TOBAC (P33491) Auxin-binding protein T92 precursor (ABP)| Length = 187 Score = 27.3 bits (59), Expect = 9.8 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = -3 Query: 104 AALHGLRQLELLEKTLAPGFMNKI 33 + LHG++++E+ +T APGF I Sbjct: 54 SVLHGMKEIEVWLQTFAPGFRTPI 77
>ELF4_MOUSE (Q9Z2U4) ETS-related transcription factor Elf-4 (E74-like factor 4)| (Myeloid Elf-1-like factor) Length = 655 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/48 (29%), Positives = 22/48 (45%) Frame = +3 Query: 183 TAGAPPSPASISTNATHAVPGLTSTIEFFPVIAHXXXXXXASTTLGTE 326 T + P+P++I PG T T++ P+ ASTT T+ Sbjct: 393 TVSSSPAPSNIHLGVAPVGPGSTVTLQTIPLTTVLTNGPPASTTAPTQ 440
>BACE1_RAT (P56819) Beta-secretase 1 precursor (EC 3.4.23.46) (Beta-site APP| cleaving enzyme 1) (Beta-site amyloid precursor protein cleaving enzyme 1) (Aspartyl protease 2) (Asp 2) (ASP2) (Membrane-associated aspartic protease 2) (Memapsin-2) Length = 501 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -1 Query: 232 CVAFVEMEAGDGGAPAVILGGAQMEDFVLDFDMEKKRLGF 113 C F ++ G ++G ME F + FD +KR+GF Sbjct: 380 CYKFAVSQSSTG----TVMGAVIMEGFYVVFDRARKRIGF 415
>BACE1_MOUSE (P56818) Beta-secretase 1 precursor (EC 3.4.23.46) (Beta-site APP| cleaving enzyme 1) (Beta-site amyloid precursor protein cleaving enzyme 1) (Aspartyl protease 2) (Asp 2) (ASP2) (Membrane-associated aspartic protease 2) (Memapsin-2) Length = 501 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -1 Query: 232 CVAFVEMEAGDGGAPAVILGGAQMEDFVLDFDMEKKRLGF 113 C F ++ G ++G ME F + FD +KR+GF Sbjct: 380 CYKFAVSQSSTG----TVMGAVIMEGFYVVFDRARKRIGF 415 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,444,575 Number of Sequences: 219361 Number of extensions: 684568 Number of successful extensions: 2711 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2594 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2711 length of database: 80,573,946 effective HSP length: 84 effective length of database: 62,147,622 effective search space used: 1491542928 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
