ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart58b05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL607124.15| Mouse DNA sequence from clone RP23-20C9 on chro... 40 0.30
2gb|AC103565.1| Caenorhabditis briggsae cosmid CB019K16, complete... 40 0.30
3gb|AC147455.3| Atelerix albiventris clone LB4-341B4, complete se... 38 1.2
4gb|AE014850.1| Plasmodium falciparum 3D7 chromosome 12, section ... 38 1.2
5gb|AC135254.2| Homo sapiens X BAC RP11-98L4 (Roswell Park Cancer... 38 1.2
6gb|AC136716.12| Mus musculus, clone RP23-42E21, complete sequence 38 1.2
7gb|AC119206.13| Mus musculus chromosome 5, clone RP24-189M4, com... 38 1.2
8gb|AC024606.11| Homo sapiens chromosome 10 clone RP11-360I20, co... 38 1.2
9gb|AF170073.1|AF170073 Plasmodium falciparum sexual stage-specif... 38 1.2
10gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold 38 1.2
11gb|AY082349.2| Trichosanthes kirilowii trichosanthin precursor (... 38 1.2
12gb|AC097231.3| Sus scrofa clone RP44-504L18, complete sequence 38 1.2
13gb|AC150625.3| Atelerix albiventris clone LB4-57B20, complete se... 38 1.2
14dbj|AP001533.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 38 1.2
15gb|AC003048.1|AC003048 Homo sapiens Xp22 Cosmid (LLNL X Chromoso... 38 1.2
16gb|AC135252.2| Homo sapiens X BAC RP11-196I10 (Roswell Park Canc... 38 1.2
17ref|NM_128006.3| Arabidopsis thaliana unknown protein AT2G24450 ... 36 4.6
18ref|NM_119966.3| Arabidopsis thaliana permease AT4G38050 mRNA, c... 36 4.6
19gb|AC154650.2| Mus musculus BAC clone RP23-162K2 from chromosome... 36 4.6
20ref|XM_456409.1| Debaryomyces hansenii CBS767 hypothetical prote... 36 4.6
21gb|BT012135.1| Arabidopsis thaliana At2g24450 mRNA, complete cds 36 4.6
22gb|AY444864.1| Arabidopsis thaliana nucleobase-ascorbate transpo... 36 4.6
23ref|XM_720822.1| Plasmodium yoelii yoelii str. 17XNL erythrocyte... 36 4.6
24emb|Z70274.1|HSU84B10 Human DNA sequence from clone LL0XNC01-84B... 36 4.6
25emb|AL662889.5| Human DNA sequence from clone RP11-370K11 on chr... 36 4.6
26emb|AL512599.33| Human DNA sequence from clone RP11-115D7 on chr... 36 4.6
27gb|CP000302.1| Shewanella denitrificans OS217, complete genome 36 4.6
28emb|AL445486.10| Human DNA sequence from clone RP11-139K1 on chr... 36 4.6
29emb|AL354699.11| Human DNA sequence from clone RP11-349E20 on ch... 36 4.6
30emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS... 36 4.6
31emb|AL161592.2|ATCHRIV88 Arabidopsis thaliana DNA chromosome 4, ... 36 4.6
32emb|AL035538.1|ATF20D10 Arabidopsis thaliana DNA chromosome 4, B... 36 4.6
33gb|AY955840.1| Paracoccidioides brasiliensis strain Pb18 mitocho... 36 4.6
34emb|BX908400.8| Zebrafish DNA sequence from clone CH211-166I5 in... 36 4.6
35gb|AC183093.2| Mus musculus BAC clone RP24-107H20 from chromosom... 36 4.6
36gb|DP000060.1| Atelerix albiventris target 117 genomic scaffold 36 4.6
37dbj|AB232918.1| Oryzias latipes hox gene cluster, complete cds 36 4.6
38gb|AC006403.4| Arabidopsis thaliana chromosome 2 clone T28I24 ma... 36 4.6
39gb|AC007538.5| Homo sapiens Xq28 PAC RPCI6-224C24 (Roswell Park ... 36 4.6
40gb|AC090051.8| Homo sapiens 12q BAC RP11-467E3 (Roswell Park Can... 36 4.6
41gb|AC021205.6| Homo sapiens BAC clone RP11-170N16 from 4, comple... 36 4.6
42gb|AC012410.10| Homo sapiens chromosome 8, clone RP11-354A3, com... 36 4.6
43gb|AC034243.7| Homo sapiens chromosome 5 clone RP1-204O11, compl... 36 4.6
44gb|AC016080.5|AC016080 Homo sapiens, clone RP11-23N14, complete ... 36 4.6
45gb|AC091696.3| Felis catus clone RP86-117J4, complete sequence 36 4.6
46emb|BX819402.1|CNS0A9QK Arabidopsis thaliana Full-length cDNA Co... 36 4.6
47gb|AC007682.3| Homo sapiens BAC clone RP11-391D19 from 2, comple... 36 4.6
48gb|AC073255.6| Homo sapiens BAC clone RP11-182E7 from 2, complet... 36 4.6
49gb|AE014844.1| Plasmodium falciparum 3D7 chromosome 12, section ... 36 4.6
50gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 36 4.6
51emb|AL645926.16| Zebrafish DNA sequence from clone RP71-1G24, co... 36 4.6
52gb|AC147636.3| Mus musculus BAC clone RP23-201C3 from 9, complet... 36 4.6
53emb|BX005054.7| Zebrafish DNA sequence from clone DKEY-209N16 in... 36 4.6
54emb|BX957249.9| Zebrafish DNA sequence from clone DKEY-46A12 in ... 36 4.6
55dbj|AP002379.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 36 4.6
56dbj|AP003730.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 36 4.6
57gb|AC092481.28| Mus musculus strain C57BL/6J chromosome 17 clone... 36 4.6
58gb|AC092480.27| Mus musculus strain C57BL/6J chromosome 17 clone... 36 4.6
59gb|AC132312.4| Mus musculus BAC clone RP24-298A20 from 12, compl... 36 4.6
60gb|AC147986.3| Mus musculus BAC clone RP24-404L1 from 5, complet... 36 4.6
61gb|L77118.1|MII2CG Methanocaldococcus jannaschii DSM 2661 large ... 36 4.6
62gb|AY884207.1| Homo sapiens catenin (cadherin-associated protein... 36 4.6
63emb|AL671338.15| Mouse DNA sequence from clone RP23-113J9 on chr... 36 4.6
64emb|AL806513.5| Mouse DNA sequence from clone RP23-480E16 on chr... 36 4.6 
>emb|AL607124.15| Mouse DNA sequence from clone RP23-20C9 on chromosome 11 Contains the
              Igfbp1 and Igfbp3 genes for insulin-like growth factor
              binding protein 1, a novel gene and a CpG island, complete
              sequence
          Length = 192843

 Score = 40.1 bits (20), Expect = 0.30
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     ttttattacccttattatta 34
              ||||||||||||||||||||
Sbjct: 178899 ttttattacccttattatta 178880
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>gb|AC103565.1| Caenorhabditis briggsae cosmid CB019K16, complete sequence
          Length = 84313

 Score = 40.1 bits (20), Expect = 0.30
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 8     gaaaacattttattacccttatta 31
             |||||||||| |||||||||||||
Sbjct: 63405 gaaaacatttaattacccttatta 63428
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>gb|AC147455.3| Atelerix albiventris clone LB4-341B4, complete sequence
          Length = 164065

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 15    ttttattacccttattatt 33
             |||||||||||||||||||
Sbjct: 59720 ttttattacccttattatt 59702
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>gb|AE014850.1| Plasmodium falciparum 3D7 chromosome 12, section 7 of 9 of the complete
              sequence
          Length = 250713

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 16     tttattacccttattatta 34
              |||||||||||||||||||
Sbjct: 130385 tttattacccttattatta 130367
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>gb|AC135254.2| Homo sapiens X BAC RP11-98L4 (Roswell Park Cancer Institute Human BAC
            Library) complete sequence
          Length = 62121

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 9    aaaacattttattaccctt 27
            |||||||||||||||||||
Sbjct: 4841 aaaacattttattaccctt 4859
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>gb|AC136716.12| Mus musculus, clone RP23-42E21, complete sequence
          Length = 259603

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 12     acattttattacccttatt 30
              |||||||||||||||||||
Sbjct: 107484 acattttattacccttatt 107466
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>gb|AC119206.13| Mus musculus chromosome 5, clone RP24-189M4, complete sequence
          Length = 168721

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 4      aggggaaaacattttatta 22
              |||||||||||||||||||
Sbjct: 141209 aggggaaaacattttatta 141191
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>gb|AC024606.11| Homo sapiens chromosome 10 clone RP11-360I20, complete sequence
          Length = 186533

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 4     aggggaaaacattttatta 22
             |||||||||||||||||||
Sbjct: 94752 aggggaaaacattttatta 94734
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>gb|AF170073.1|AF170073 Plasmodium falciparum sexual stage-specific protein kinase gene,
            complete cds
          Length = 6968

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 13   cattttattacccttatta 31
            |||||||||||||||||||
Sbjct: 2429 cattttattacccttatta 2411
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>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
          Length = 2136267

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 15     ttttattacccttattatt 33
              |||||||||||||||||||
Sbjct: 990276 ttttattacccttattatt 990258



 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 9      aaaacattttattaccctt 27
              |||||||||||||||||||
Sbjct: 919571 aaaacattttattaccctt 919589
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>gb|AY082349.2| Trichosanthes kirilowii trichosanthin precursor (TCS) gene,
          complete cds
          Length = 1809

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 14 attttattacccttattat 32
          |||||||||||||||||||
Sbjct: 87 attttattacccttattat 69
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>gb|AC097231.3| Sus scrofa clone RP44-504L18, complete sequence
          Length = 161823

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 3     caggggaaaacattttatt 21
             |||||||||||||||||||
Sbjct: 77233 caggggaaaacattttatt 77251
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>gb|AC150625.3| Atelerix albiventris clone LB4-57B20, complete sequence
          Length = 81183

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 9     aaaacattttattaccctt 27
             |||||||||||||||||||
Sbjct: 53085 aaaacattttattaccctt 53103
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>dbj|AP001533.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-788M5, complete
             sequence
          Length = 207183

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 8     gaaaacattttattaccct 26
             |||||||||||||||||||
Sbjct: 33666 gaaaacattttattaccct 33648
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>gb|AC003048.1|AC003048 Homo sapiens Xp22 Cosmid (LLNL X Chromosome Cosmid library) complete
             sequence
          Length = 41081

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 9     aaaacattttattaccctt 27
             |||||||||||||||||||
Sbjct: 30294 aaaacattttattaccctt 30276
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>gb|AC135252.2| Homo sapiens X BAC RP11-196I10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 62101

 Score = 38.2 bits (19), Expect = 1.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 9     aaaacattttattaccctt 27
             |||||||||||||||||||
Sbjct: 57285 aaaacattttattaccctt 57267
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>ref|NM_128006.3| Arabidopsis thaliana unknown protein AT2G24450 mRNA, complete cds
          Length = 1133

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                            
Query: 16 tttattacccttattatt 33
          ||||||||||||||||||
Sbjct: 47 tttattacccttattatt 30
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>ref|NM_119966.3| Arabidopsis thaliana permease AT4G38050 mRNA, complete cds
          Length = 2300

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                            
Query: 19 attacccttattattacc 36
          ||||||||||||||||||
Sbjct: 72 attacccttattattacc 55
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>gb|AC154650.2| Mus musculus BAC clone RP23-162K2 from chromosome 17, complete sequence
          Length = 210417

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 4     aggggaaaacattttatt 21
             ||||||||||||||||||
Sbjct: 57982 aggggaaaacattttatt 57999
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>ref|XM_456409.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0A02057g)
            partial mRNA
          Length = 2904

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 19   attacccttattattaccccat 40
            |||||| |||||||||||||||
Sbjct: 2775 attaccattattattaccccat 2754
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>gb|BT012135.1| Arabidopsis thaliana At2g24450 mRNA, complete cds
          Length = 1141

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 16  tttattacccttattatt 33
           ||||||||||||||||||
Sbjct: 100 tttattacccttattatt 83
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>gb|AY444864.1| Arabidopsis thaliana nucleobase-ascorbate transporter 11 mRNA,
          complete cds; nuclear gene for plastid product
          Length = 2160

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                            
Query: 19 attacccttattattacc 36
          ||||||||||||||||||
Sbjct: 72 attacccttattattacc 55
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>ref|XM_720822.1| Plasmodium yoelii yoelii str. 17XNL erythrocyte membrane protein
            (PY00637) partial mRNA
          Length = 6402

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 15   ttttattacccttattattacc 36
            |||||||||| |||||||||||
Sbjct: 1408 ttttattaccattattattacc 1387
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>emb|Z70274.1|HSU84B10 Human DNA sequence from clone LL0XNC01-84B10 on chromosome X Contains
             the 5' end of a novel gene and a CpG island, complete
             sequence
          Length = 43273

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 13    cattttattacccttattatta 34
             |||| |||||||||||||||||
Sbjct: 23798 cattatattacccttattatta 23819
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>emb|AL662889.5| Human DNA sequence from clone RP11-370K11 on chromosome 1 Contains a
             fatty acid binding protein, muscle and heart
             (mammary-derived growth inhibitor) pseudogene and part of
             the AKT3 gene for  v-akt murine thymoma viral oncogene
             homolog 3 (protein kinase B, gamma), complete sequence
          Length = 127036

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 6     gggaaaacattttattac 23
             ||||||||||||||||||
Sbjct: 23742 gggaaaacattttattac 23759
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>emb|AL512599.33| Human DNA sequence from clone RP11-115D7 on chromosome 1 Contains the
              CAP1 gene for CAP, adenylate cyclase-associated protein 1
              (yeast), the PPT1 gene for palmitoyl-protein thioesterase 1
              (ceroid-lipofuscinosis, neuronal 1, infantile), an
              ornithine decarboxylase antizyme 1 (OAZ1) pseudogene, the
              5' end of the RLF gene for rearranged L-myc fusion sequence
              and a CpG island, complete sequence
          Length = 157750

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 17     ttattacccttattatta 34
              ||||||||||||||||||
Sbjct: 122028 ttattacccttattatta 122045
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 12      acattttattacccttat 29
               ||||||||||||||||||
Sbjct: 1969236 acattttattacccttat 1969219
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>emb|AL445486.10| Human DNA sequence from clone RP11-139K1 on chromosome 10 Contains part
             of the TCF7L2 gene for transcription factor 7-like 2
             (T-cell specific, HMG-box) and a ribosomal protein S15
             (RPS15) pseudogene, complete sequence
          Length = 101839

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 2     acaggggaaaacatttta 19
             ||||||||||||||||||
Sbjct: 84156 acaggggaaaacatttta 84173
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>emb|AL354699.11| Human DNA sequence from clone RP11-349E20 on chromosome 1, complete
             sequence
          Length = 81483

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 17    ttattacccttattatta 34
             ||||||||||||||||||
Sbjct: 22304 ttattacccttattatta 22287
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>emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS767 of Debaryomyces
              hansenii
          Length = 1249565

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 19     attacccttattattaccccat 40
              |||||| |||||||||||||||
Sbjct: 133040 attaccattattattaccccat 133061
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>emb|AL161592.2|ATCHRIV88 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88
          Length = 198493

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 19     attacccttattattacc 36
              ||||||||||||||||||
Sbjct: 174844 attacccttattattacc 174861
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>emb|AL035538.1|ATF20D10 Arabidopsis thaliana DNA chromosome 4, BAC clone  F20D10 (ESSA project)
          Length = 147215

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 19    attacccttattattacc 36
             ||||||||||||||||||
Sbjct: 60429 attacccttattattacc 60446
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>gb|AY955840.1| Paracoccidioides brasiliensis strain Pb18 mitochondrion, complete
            genome
          Length = 71335

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 17   ttattacccttattatta 34
            ||||||||||||||||||
Sbjct: 2217 ttattacccttattatta 2200



 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 17   ttattacccttattatta 34
            ||||||||||||||||||
Sbjct: 2168 ttattacccttattatta 2151
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>emb|BX908400.8| Zebrafish DNA sequence from clone CH211-166I5 in linkage group 25,
            complete sequence
          Length = 136937

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 14   attttattacccttattattac 35
            ||||||||||| ||||||||||
Sbjct: 1639 attttattaccattattattac 1618
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>gb|AC183093.2| Mus musculus BAC clone RP24-107H20 from chromosome 17, complete sequence
          Length = 181403

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 4      aggggaaaacattttatt 21
              ||||||||||||||||||
Sbjct: 163452 aggggaaaacattttatt 163469
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>gb|DP000060.1| Atelerix albiventris target 117 genomic scaffold
          Length = 527158

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 13     cattttattacccttatt 30
              ||||||||||||||||||
Sbjct: 468076 cattttattacccttatt 468093
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>dbj|AB232918.1| Oryzias latipes hox gene cluster, complete cds
          Length = 268959

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 6      gggaaaacattttattaccctt 27
              |||||||| |||||||||||||
Sbjct: 229913 gggaaaaccttttattaccctt 229934
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>gb|AC006403.4| Arabidopsis thaliana chromosome 2 clone T28I24 map mi238, complete
             sequence
          Length = 79555

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 16    tttattacccttattatt 33
             ||||||||||||||||||
Sbjct: 57851 tttattacccttattatt 57868
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>gb|AC007538.5| Homo sapiens Xq28 PAC RPCI6-224C24 (Roswell Park Cancer Institute Human
             PAC Library) complete sequence
          Length = 178544

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                       
Query: 14    attttattacccttattattacccca 39
             |||||||||||||||| || ||||||
Sbjct: 44936 attttattacccttataataacccca 44911
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>gb|AC090051.8| Homo sapiens 12q BAC RP11-467E3 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 148120

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 4     aggggaaaacattttatt 21
             ||||||||||||||||||
Sbjct: 71967 aggggaaaacattttatt 71984
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>gb|AC021205.6| Homo sapiens BAC clone RP11-170N16 from 4, complete sequence
          Length = 178917

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 9     aaaacattttattacccttatt 30
             ||||||||||||| ||||||||
Sbjct: 33031 aaaacattttattgcccttatt 33010
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>gb|AC012410.10| Homo sapiens chromosome 8, clone RP11-354A3, complete sequence
          Length = 220715

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 7      ggaaaacattttattacc 24
              ||||||||||||||||||
Sbjct: 173080 ggaaaacattttattacc 173063
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>gb|AC034243.7| Homo sapiens chromosome 5 clone RP1-204O11, complete sequence
          Length = 191308

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 7     ggaaaacattttattacc 24
             ||||||||||||||||||
Sbjct: 86845 ggaaaacattttattacc 86862
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>gb|AC016080.5|AC016080 Homo sapiens, clone RP11-23N14, complete sequence
          Length = 176921

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 7     ggaaaacattttattacc 24
             ||||||||||||||||||
Sbjct: 26683 ggaaaacattttattacc 26700
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>gb|AC091696.3| Felis catus clone RP86-117J4, complete sequence
          Length = 136083

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 1     gacaggggaaaacatttt 18
             ||||||||||||||||||
Sbjct: 25139 gacaggggaaaacatttt 25156
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>emb|BX819402.1|CNS0A9QK Arabidopsis thaliana Full-length cDNA Complete sequence from
          clone GSLTFB75ZC05 of Flowers and buds of strain col-0
          of Arabidopsis thaliana (thale cress)
          Length = 1030

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                            
Query: 16 tttattacccttattatt 33
          ||||||||||||||||||
Sbjct: 35 tttattacccttattatt 18
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>gb|AC007682.3| Homo sapiens BAC clone RP11-391D19 from 2, complete sequence
          Length = 189968

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 4      aggggaaaacattttatt 21
              ||||||||||||||||||
Sbjct: 128437 aggggaaaacattttatt 128454
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>gb|AC073255.6| Homo sapiens BAC clone RP11-182E7 from 2, complete sequence
          Length = 183720

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 6     gggaaaacattttattac 23
             ||||||||||||||||||
Sbjct: 40505 gggaaaacattttattac 40488
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>gb|AE014844.1| Plasmodium falciparum 3D7 chromosome 12, section 1 of 9 of the complete
              sequence
          Length = 251551

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                        
Query: 11     aacattttattacccttattattacc 36
              |||||||||||| | |||||||||||
Sbjct: 154725 aacattttattatcattattattacc 154750
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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 1       gacaggggaaaacatttt 18
               ||||||||||||||||||
Sbjct: 2037799 gacaggggaaaacatttt 2037782
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>emb|AL645926.16| Zebrafish DNA sequence from clone RP71-1G24, complete sequence
          Length = 141213

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 15   ttttattacccttattat 32
            ||||||||||||||||||
Sbjct: 9354 ttttattacccttattat 9371
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>gb|AC147636.3| Mus musculus BAC clone RP23-201C3 from 9, complete sequence
          Length = 202197

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                        
Query: 9      aaaacattttattacccttattatta 34
              |||| ||||||||||| |||||||||
Sbjct: 148636 aaaagattttattaccattattatta 148661
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>emb|BX005054.7| Zebrafish DNA sequence from clone DKEY-209N16 in linkage group 6,
              complete sequence
          Length = 230686

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 17     ttattacccttattatta 34
              ||||||||||||||||||
Sbjct: 203944 ttattacccttattatta 203961
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>emb|BX957249.9| Zebrafish DNA sequence from clone DKEY-46A12 in linkage group 19,
             complete sequence
          Length = 26579

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                       
Query: 9     aaaacattttattacccttattatta 34
             |||||||||||||||  |||||||||
Sbjct: 14110 aaaacattttattactattattatta 14135
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>dbj|AP002379.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-463F4, complete
             sequence
          Length = 215986

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 13    cattttattacccttattatta 34
             |||||||||||| |||||||||
Sbjct: 80637 cattttattaccattattatta 80616
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>dbj|AP003730.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-379J13, complete
              sequences
          Length = 226171

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                    
Query: 13     cattttattacccttattatta 34
              |||||||||||| |||||||||
Sbjct: 163766 cattttattaccattattatta 163745
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>gb|AC092481.28| Mus musculus strain C57BL/6J chromosome 17 clone rp23-456p8, complete
              sequence
          Length = 195988

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 4      aggggaaaacattttatt 21
              ||||||||||||||||||
Sbjct: 160822 aggggaaaacattttatt 160839
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>gb|AC092480.27| Mus musculus strain C57BL/6J chromosome 17 clone rp23-387f2, complete
             sequence
          Length = 213144

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 4     aggggaaaacattttatt 21
             ||||||||||||||||||
Sbjct: 69842 aggggaaaacattttatt 69859
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>gb|AC132312.4| Mus musculus BAC clone RP24-298A20 from 12, complete sequence
          Length = 177464

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 8     gaaaacattttattaccc 25
             ||||||||||||||||||
Sbjct: 68659 gaaaacattttattaccc 68642
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>gb|AC147986.3| Mus musculus BAC clone RP24-404L1 from 5, complete sequence
          Length = 177652

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 9     aaaacattttattacccttatt 30
             ||||||||||||||| ||||||
Sbjct: 98992 aaaacattttattacacttatt 98971
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>gb|L77118.1|MII2CG Methanocaldococcus jannaschii DSM 2661 large extra-chromosomal element,
             complete sequence.~
          Length = 58407

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                       
Query: 9     aaaacattttattacccttattatta 34
             |||||||||||  |||||||||||||
Sbjct: 47008 aaaacattttagaacccttattatta 46983
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>gb|AY884207.1| Homo sapiens catenin (cadherin-associated protein), alpha 1, 102kDa
             (CTNNA1) gene, complete cds
          Length = 155983

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 7     ggaaaacattttattacc 24
             ||||||||||||||||||
Sbjct: 13868 ggaaaacattttattacc 13885
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>emb|AL671338.15| Mouse DNA sequence from clone RP23-113J9 on chromosome 4, complete
             sequence
          Length = 172327

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 11    aacattttattacccttattat 32
             ||||||||||||| ||||||||
Sbjct: 80687 aacattttattactcttattat 80666
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>emb|AL806513.5| Mouse DNA sequence from clone RP23-480E16 on chromosome 4, complete
              sequence
          Length = 189780

 Score = 36.2 bits (18), Expect = 4.6
 Identities = 24/26 (92%)
 Strand = Plus / Minus

                                        
Query: 9      aaaacattttattacccttattatta 34
              |||||||||||||| |||| ||||||
Sbjct: 156977 aaaacattttattaacctttttatta 156952


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 614,234
Number of Sequences: 3902068
Number of extensions: 614234
Number of successful extensions: 163233
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 162962
Number of HSP's gapped (non-prelim): 271
length of query: 41
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 21
effective length of database: 17,155,003,908
effective search space: 360255082068
effective search space used: 360255082068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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