ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart58b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF3X_HUMAN (O75153) Putative eukaryotic translation initiation f... 28 6.9
2ACCD_SPIOL (Q9M3L7) Acetyl-coenzyme A carboxylase carboxyl trans... 28 9.0

>IF3X_HUMAN (O75153) Putative eukaryotic translation initiation factor 3|
           subunit (eIF-3)
          Length = 1309

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 146 QIHAQHARTQLVSIDPSVSWTMNDPPSLNFL 238
           +IH +H R  L S+DPS ++   D  SL+FL
Sbjct: 129 RIHVRHVRDLLKSLDPSDAFNGVDCNSLSFL 159



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>ACCD_SPIOL (Q9M3L7) Acetyl-coenzyme A carboxylase carboxyl transferase subunit|
           beta (EC 6.4.1.2) (ACCase beta chain)
          Length = 522

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +2

Query: 41  HLNRGRKEREQKWTFNNKRRRSEEEAASKK***PIQIHAQHARTQLVSIDPSVSWTMNDP 220
           H NRG++   +KW FN+   + E E            H       + S+ P  + +  + 
Sbjct: 23  HANRGQESSMKKWWFNSMLSKKELE------------HGCGLSKSMDSLGPIENTSTKED 70

Query: 221 PSLN 232
           PSLN
Sbjct: 71  PSLN 74


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,552,415
Number of Sequences: 219361
Number of extensions: 592099
Number of successful extensions: 1626
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1625
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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