Clone Name | rbart58b03 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_195166.1| Oryza sativa (japonica cultivar-group) putative glucosyltransferase (OSJNBa0047G15.18), mRNA Length = 1587 Score = 67.9 bits (34), Expect = 2e-08 Identities = 85/102 (83%) Strand = Plus / Minus Query: 232 gatcatgtccgtcaagtcggaatgcgatgacccgctttcctccatggccgccctcgcctc 291 ||||| |||||||| ||||| ||||| ||||||| ||||||||| ||||||||||||| Sbjct: 1440 gatcacgtccgtcaggtcggcgtgcgacgacccgccttcctccatcgccgccctcgcctt 1381 Query: 292 agcggcgatctcgttggccctgagcctcctcgccgacccctc 333 ||||||| ||| ||||| | ||||||||||| |||||| Sbjct: 1380 cgcggcgagctccttggcgcgcgccctcctcgccgtcccctc 1339
>gb|AC083944.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0047G15, from chromosome 10, complete sequence Length = 166474 Score = 67.9 bits (34), Expect = 2e-08 Identities = 85/102 (83%) Strand = Plus / Minus Query: 232 gatcatgtccgtcaagtcggaatgcgatgacccgctttcctccatggccgccctcgcctc 291 ||||| |||||||| ||||| ||||| ||||||| ||||||||| ||||||||||||| Sbjct: 70039 gatcacgtccgtcaggtcggcgtgcgacgacccgccttcctccatcgccgccctcgcctt 69980 Query: 292 agcggcgatctcgttggccctgagcctcctcgccgacccctc 333 ||||||| ||| ||||| | ||||||||||| |||||| Sbjct: 69979 cgcggcgagctccttggcgcgcgccctcctcgccgtcccctc 69938
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 67.9 bits (34), Expect = 2e-08 Identities = 85/102 (83%) Strand = Plus / Minus Query: 232 gatcatgtccgtcaagtcggaatgcgatgacccgctttcctccatggccgccctcgcctc 291 ||||| |||||||| ||||| ||||| ||||||| ||||||||| ||||||||||||| Sbjct: 5064738 gatcacgtccgtcaggtcggcgtgcgacgacccgccttcctccatcgccgccctcgcctt 5064679 Query: 292 agcggcgatctcgttggccctgagcctcctcgccgacccctc 333 ||||||| ||| ||||| | ||||||||||| |||||| Sbjct: 5064678 cgcggcgagctccttggcgcgcgccctcctcgccgtcccctc 5064637
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 67.9 bits (34), Expect = 2e-08 Identities = 85/102 (83%) Strand = Plus / Minus Query: 232 gatcatgtccgtcaagtcggaatgcgatgacccgctttcctccatggccgccctcgcctc 291 ||||| |||||||| ||||| ||||| ||||||| ||||||||| ||||||||||||| Sbjct: 5065525 gatcacgtccgtcaggtcggcgtgcgacgacccgccttcctccatcgccgccctcgcctt 5065466 Query: 292 agcggcgatctcgttggccctgagcctcctcgccgacccctc 333 ||||||| ||| ||||| | ||||||||||| |||||| Sbjct: 5065465 cgcggcgagctccttggcgcgcgccctcctcgccgtcccctc 5065424
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 229 gcggatcatgtccgtcaagtcggaatgcgatgacccgctttcctccatggccgccctcgc 288 ||||||||||||||||| ||||| ||||| ||||||| |||||||| ||||||||||| Sbjct: 3913814 gcggatcatgtccgtcaggtcggcgtgcgacgacccgccttcctccaccgccgccctcgc 3913873 Query: 289 c 289 | Sbjct: 3913874 c 3913874
>dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0013F10 Length = 163095 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Plus Query: 229 gcggatcatgtccgtcaagtcggaatgcgatgacccgctttcctccatggccgccctcgc 288 ||||||||||||||||| ||||| ||||| ||||||| |||||||| ||||||||||| Sbjct: 35718 gcggatcatgtccgtcaggtcggcgtgcgacgacccgccttcctccaccgccgccctcgc 35777 Query: 289 c 289 | Sbjct: 35778 c 35778
>dbj|AK066178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058P11, full insert sequence Length = 1717 Score = 60.0 bits (30), Expect = 6e-06 Identities = 84/102 (82%) Strand = Plus / Minus Query: 232 gatcatgtccgtcaagtcggaatgcgatgacccgctttcctccatggccgccctcgcctc 291 ||||| |||||||| | ||| ||||| ||||||| ||||||||| ||||||||||||| Sbjct: 1466 gatcacgtccgtcaggccggcgtgcgacgacccgccttcctccatcgccgccctcgcctt 1407 Query: 292 agcggcgatctcgttggccctgagcctcctcgccgacccctc 333 ||||||| ||| ||||| | ||||||||||| |||||| Sbjct: 1406 cgcggcgagctccttggcgcgcgccctcctcgccgtcccctc 1365
>emb|AL359390.14| Human DNA sequence from clone RP11-139E24 on chromosome 1, complete sequence Length = 83750 Score = 46.1 bits (23), Expect = 0.089 Identities = 23/23 (100%) Strand = Plus / Plus Query: 88 tggaagatcctaaatgctaactt 110 ||||||||||||||||||||||| Sbjct: 77817 tggaagatcctaaatgctaactt 77839
>dbj|AB058947.1| Streptomyces albulus plasmid pNO33 DNA, complete sequence Length = 36955 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 360 ccgccttctccacctcgcggc 380 ||||||||||||||||||||| Sbjct: 8020 ccgccttctccacctcgcggc 8000
>gb|AY691911.1| Uncultured bacterium clone HZ28 unknown sequence Length = 5608 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 356 gcaaccgccttctccacctcg 376 ||||||||||||||||||||| Sbjct: 3395 gcaaccgccttctccacctcg 3375
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 331 ctccggcccgtcgcccatcat 351 ||||||||||||||||||||| Sbjct: 624845 ctccggcccgtcgcccatcat 624865
>emb|AJ810898.1| Ruminococcus flavefaciens cbpA gene for cellulose-binding protein, strain 17 Length = 2320 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 ttacatttgcgtatacaaca 58 |||||||||||||||||||| Sbjct: 662 ttacatttgcgtatacaaca 681
>gb|AC182399.3| Pan troglodytes BAC clone CH251-19C24 from chromosome 6, complete sequence Length = 226479 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 gaaccccctcggcctctttc 409 |||||||||||||||||||| Sbjct: 206432 gaaccccctcggcctctttc 206451
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 acatagcggatcatgtccgt 243 |||||||||||||||||||| Sbjct: 2674140 acatagcggatcatgtccgt 2674121
>dbj|AB039273.1| Streptomyces griseus gene for ECF sigma factor AdsA, complete cds Length = 4687 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 ccgacccctccggcccgtcg 343 |||||||||||||||||||| Sbjct: 3991 ccgacccctccggcccgtcg 4010 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,728,338 Number of Sequences: 3902068 Number of extensions: 2728338 Number of successful extensions: 57315 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57222 Number of HSP's gapped (non-prelim): 93 length of query: 409 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 387 effective length of database: 17,147,199,772 effective search space: 6635966311764 effective search space used: 6635966311764 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)