ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart58b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_195166.1| Oryza sativa (japonica cultivar-group) putative... 68 2e-08
2gb|AC083944.8| Genomic sequence for Oryza sativa, Nipponbare str... 68 2e-08
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 68 2e-08
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
6dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
7dbj|AK066178.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 6e-06
8emb|AL359390.14| Human DNA sequence from clone RP11-139E24 on ch... 46 0.089
9dbj|AB058947.1| Streptomyces albulus plasmid pNO33 DNA, complete... 42 1.4
10gb|AY691911.1| Uncultured bacterium clone HZ28 unknown sequence 42 1.4
11gb|CP000009.1| Gluconobacter oxydans 621H, complete genome 42 1.4
12emb|AJ810898.1| Ruminococcus flavefaciens cbpA gene for cellulos... 40 5.5
13gb|AC182399.3| Pan troglodytes BAC clone CH251-19C24 from chromo... 40 5.5
14gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 40 5.5
15dbj|AB039273.1| Streptomyces griseus gene for ECF sigma factor A... 40 5.5

>ref|NM_195166.1| Oryza sativa (japonica cultivar-group) putative glucosyltransferase
            (OSJNBa0047G15.18), mRNA
          Length = 1587

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 85/102 (83%)
 Strand = Plus / Minus

                                                                        
Query: 232  gatcatgtccgtcaagtcggaatgcgatgacccgctttcctccatggccgccctcgcctc 291
            ||||| |||||||| |||||  ||||| ||||||| ||||||||| ||||||||||||| 
Sbjct: 1440 gatcacgtccgtcaggtcggcgtgcgacgacccgccttcctccatcgccgccctcgcctt 1381

                                                      
Query: 292  agcggcgatctcgttggccctgagcctcctcgccgacccctc 333
             ||||||| ||| ||||| |    ||||||||||| ||||||
Sbjct: 1380 cgcggcgagctccttggcgcgcgccctcctcgccgtcccctc 1339



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>gb|AC083944.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0047G15, from chromosome 10, complete sequence
          Length = 166474

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 85/102 (83%)
 Strand = Plus / Minus

                                                                         
Query: 232   gatcatgtccgtcaagtcggaatgcgatgacccgctttcctccatggccgccctcgcctc 291
             ||||| |||||||| |||||  ||||| ||||||| ||||||||| ||||||||||||| 
Sbjct: 70039 gatcacgtccgtcaggtcggcgtgcgacgacccgccttcctccatcgccgccctcgcctt 69980

                                                       
Query: 292   agcggcgatctcgttggccctgagcctcctcgccgacccctc 333
              ||||||| ||| ||||| |    ||||||||||| ||||||
Sbjct: 69979 cgcggcgagctccttggcgcgcgccctcctcgccgtcccctc 69938



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 85/102 (83%)
 Strand = Plus / Minus

                                                                           
Query: 232     gatcatgtccgtcaagtcggaatgcgatgacccgctttcctccatggccgccctcgcctc 291
               ||||| |||||||| |||||  ||||| ||||||| ||||||||| ||||||||||||| 
Sbjct: 5064738 gatcacgtccgtcaggtcggcgtgcgacgacccgccttcctccatcgccgccctcgcctt 5064679

                                                         
Query: 292     agcggcgatctcgttggccctgagcctcctcgccgacccctc 333
                ||||||| ||| ||||| |    ||||||||||| ||||||
Sbjct: 5064678 cgcggcgagctccttggcgcgcgccctcctcgccgtcccctc 5064637



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 85/102 (83%)
 Strand = Plus / Minus

                                                                           
Query: 232     gatcatgtccgtcaagtcggaatgcgatgacccgctttcctccatggccgccctcgcctc 291
               ||||| |||||||| |||||  ||||| ||||||| ||||||||| ||||||||||||| 
Sbjct: 5065525 gatcacgtccgtcaggtcggcgtgcgacgacccgccttcctccatcgccgccctcgcctt 5065466

                                                         
Query: 292     agcggcgatctcgttggccctgagcctcctcgccgacccctc 333
                ||||||| ||| ||||| |    ||||||||||| ||||||
Sbjct: 5065465 cgcggcgagctccttggcgcgcgccctcctcgccgtcccctc 5065424



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                           
Query: 229     gcggatcatgtccgtcaagtcggaatgcgatgacccgctttcctccatggccgccctcgc 288
               ||||||||||||||||| |||||  ||||| ||||||| ||||||||  |||||||||||
Sbjct: 3913814 gcggatcatgtccgtcaggtcggcgtgcgacgacccgccttcctccaccgccgccctcgc 3913873

                
Query: 289     c 289
               |
Sbjct: 3913874 c 3913874



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>dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0013F10
          Length = 163095

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                         
Query: 229   gcggatcatgtccgtcaagtcggaatgcgatgacccgctttcctccatggccgccctcgc 288
             ||||||||||||||||| |||||  ||||| ||||||| ||||||||  |||||||||||
Sbjct: 35718 gcggatcatgtccgtcaggtcggcgtgcgacgacccgccttcctccaccgccgccctcgc 35777

              
Query: 289   c 289
             |
Sbjct: 35778 c 35778



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>dbj|AK066178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058P11, full
            insert sequence
          Length = 1717

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 84/102 (82%)
 Strand = Plus / Minus

                                                                        
Query: 232  gatcatgtccgtcaagtcggaatgcgatgacccgctttcctccatggccgccctcgcctc 291
            ||||| |||||||| | |||  ||||| ||||||| ||||||||| ||||||||||||| 
Sbjct: 1466 gatcacgtccgtcaggccggcgtgcgacgacccgccttcctccatcgccgccctcgcctt 1407

                                                      
Query: 292  agcggcgatctcgttggccctgagcctcctcgccgacccctc 333
             ||||||| ||| ||||| |    ||||||||||| ||||||
Sbjct: 1406 cgcggcgagctccttggcgcgcgccctcctcgccgtcccctc 1365



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>emb|AL359390.14| Human DNA sequence from clone RP11-139E24 on chromosome 1, complete
             sequence
          Length = 83750

 Score = 46.1 bits (23), Expect = 0.089
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 88    tggaagatcctaaatgctaactt 110
             |||||||||||||||||||||||
Sbjct: 77817 tggaagatcctaaatgctaactt 77839



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>dbj|AB058947.1| Streptomyces albulus plasmid pNO33 DNA, complete sequence
          Length = 36955

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 360  ccgccttctccacctcgcggc 380
            |||||||||||||||||||||
Sbjct: 8020 ccgccttctccacctcgcggc 8000



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>gb|AY691911.1| Uncultured bacterium clone HZ28 unknown sequence
          Length = 5608

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 356  gcaaccgccttctccacctcg 376
            |||||||||||||||||||||
Sbjct: 3395 gcaaccgccttctccacctcg 3375



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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 331    ctccggcccgtcgcccatcat 351
              |||||||||||||||||||||
Sbjct: 624845 ctccggcccgtcgcccatcat 624865



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>emb|AJ810898.1| Ruminococcus flavefaciens cbpA gene for cellulose-binding protein,
           strain 17
          Length = 2320

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 39  ttacatttgcgtatacaaca 58
           ||||||||||||||||||||
Sbjct: 662 ttacatttgcgtatacaaca 681



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>gb|AC182399.3| Pan troglodytes BAC clone CH251-19C24 from chromosome 6, complete
              sequence
          Length = 226479

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 390    gaaccccctcggcctctttc 409
              ||||||||||||||||||||
Sbjct: 206432 gaaccccctcggcctctttc 206451



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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 224     acatagcggatcatgtccgt 243
               ||||||||||||||||||||
Sbjct: 2674140 acatagcggatcatgtccgt 2674121



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>dbj|AB039273.1| Streptomyces griseus gene for ECF sigma factor AdsA, complete cds
          Length = 4687

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 324  ccgacccctccggcccgtcg 343
            ||||||||||||||||||||
Sbjct: 3991 ccgacccctccggcccgtcg 4010


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,728,338
Number of Sequences: 3902068
Number of extensions: 2728338
Number of successful extensions: 57315
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57222
Number of HSP's gapped (non-prelim): 93
length of query: 409
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 387
effective length of database: 17,147,199,772
effective search space: 6635966311764
effective search space used: 6635966311764
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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