>SYE_CLOTE (Q896M5) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA|
           ligase) (GluRS)
          Length = 488

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +1

Query: 64  QLLSSLPGLINHMEVVEGLERICDLLVENKYRTHYTRIVKIKRQLLPCRKRTHDWQRQRI 243
           +LLS +P  ++  + +   E  CDL V  K +T++   ++   + LP  +   +W  + I
Sbjct: 366 ELLSEIPEQVDFFDELP--EYSCDLYVHKKMKTNFENSLESLEKALPVLESIDNWNTETI 423

>DUT_BPT5 (O48500) Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC|
           3.6.1.23) (dUTPase) (dUTP pyrophosphatase)
          Length = 148

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 94  NHMEVVEGLERICDLLVENKYRTHYTRIV 180
           + M+ +E  ER+C L+V   Y TH  +IV
Sbjct: 101 SEMQTLENFERLCQLVVLPHYSTHNFKIV 129

>RAD50_METAC (Q8TRL1) DNA double-strand break repair rad50 ATPase|
          Length = 1074

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +1

Query: 16  LFKLIQNNRRGRFDEQQ----LLSSLPGLINHMEVVEGLERICDLLVENKYRTH 165
           L K ++ N +   D Q+    +L+ L GL    + +E LE   +LL+ENK R H
Sbjct: 477 LEKELRENSKAVLDIQEQKSEVLAELKGLGFAADQLENLEDFSELLLENKSRLH 530

>KI3L1_RAT (P83556) Killer cell immunoglobulin-like receptor 3DL1 precursor|
          Length = 422

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 174 SSIMSPVFIFYKEITYSLQSLHYFHVIDQPREG 76
           SS+MSPV +  + +T S  S H F +    REG
Sbjct: 227 SSVMSPVLVSEQNMTLSCISNHQFEMFHLSREG 259

>PTPRT_MOUSE (Q99M80) Receptor-type tyrosine-protein phosphatase T precursor (EC|
           3.1.3.48) (R-PTP-T) (RPTP-rho) (mRPTPrho) (RPTPmam4)
          Length = 1454

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -1

Query: 291 LPLVYRETARQVSSCWY-----PLPLPVMSPFPAGEQLPFNFYYSSIMSPV 154
           +P+ YR  +   S  ++     P  LPV  PF  G+   +N Y++  +SP+
Sbjct: 652 VPVSYRNASNLDSLHYFAAELKPSNLPVTQPFTVGDNKTYNGYWNPPLSPL 702

>PTPRT_HUMAN (O14522) Receptor-type tyrosine-protein phosphatase T precursor (EC|
           3.1.3.48) (R-PTP-T) (RPTP-rho)
          Length = 1463

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -1

Query: 291 LPLVYRETARQVSSCWY-----PLPLPVMSPFPAGEQLPFNFYYSSIMSPV 154
           +P+ YR  +   S  ++     P  LPV  PF  G+   +N Y++  +SP+
Sbjct: 648 VPVSYRNASSLDSLHYFAAELKPANLPVTQPFTVGDNKTYNGYWNPPLSPL 698

>DAPB_LISIN (Q92AA1) Dihydrodipicolinate reductase (EC 1.3.1.26) (DHPR)|
          Length = 263

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 22  KLIQNNRRGRFDEQQLLS-SLPGLINHMEVVEGLE 123
           +LI+  R G ++  ++ S  LPGL+ H EV+ G E
Sbjct: 187 ELIEGARGGEYEGMRIHSVRLPGLVAHQEVIFGAE 221

>DCTD_YEAST (P06773) Deoxycytidylate deaminase (EC 3.5.4.12) (dCMP deaminase)|
          Length = 312

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/69 (20%), Positives = 36/69 (52%)
 Frame = +1

Query: 10  HILFKLIQNNRRGRFDEQQLLSSLPGLINHMEVVEGLERICDLLVENKYRTHYTRIVKIK 189
           H+ FK++  +RRGR   Q L+++   +   +++++  E+    L+   + +++ ++  + 
Sbjct: 120 HLRFKIVNEDRRGR--RQSLINN---ITTQLKILDDKEKQMAPLMRPSWDSYFMKLATLA 174

Query: 190 RQLLPCRKR 216
                C KR
Sbjct: 175 ASRSNCMKR 183

>SYT1_BACSU (P18255) Threonyl-tRNA synthetase 1 (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 643

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 88  LINHMEVVEGLERICDLLVENKYRTHYTRIVKIKRQLLPCRKRTHDWQRQRIPTRRNLTG 267
           ++ H  VV  +ER    L+E       T +  ++ Q++P     H    +++  R    G
Sbjct: 516 VVIHRGVVSTMERFVAFLIEEHKGALPTWLAPVQFQVIPVSPAVHLDYAKKVQERLQCEG 575

Query: 268 -RLSVDQRQQQL 300
            R+ VD R +++
Sbjct: 576 LRVEVDSRDEKI 587


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,140,368
Number of Sequences: 219361
Number of extensions: 1032261
Number of successful extensions: 2838
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2838
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)