ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart58a12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ410870.2|SSC410870 Sus scrofa COX7A1 gene, CAPNS1 gene, C... 44 0.30
2gb|AC110612.3| Homo sapiens BAC clone RP11-416B16 from 4, comple... 42 1.2
3emb|AL831775.6| Mouse DNA sequence from clone RP23-146M22 on chr... 42 1.2
4gb|AY219680.1| Panthera pardus Smcy gene, intron 4, complete seq... 40 4.7
5gb|AY219679.1| Panthera onca Smcy gene, intron 4, complete sequence 40 4.7
6gb|AY219678.1| Uncia uncia Smcy gene, intron 4, complete sequence 40 4.7
7gb|AY219677.1| Panthera tigris Smcy gene, intron 4, complete seq... 40 4.7
8gb|AY219676.1| Catopuma temminckii Smcy gene, intron 4, complete... 40 4.7
9gb|AY219675.1| Prionailurus viverrinus Smcy gene, intron 4, comp... 40 4.7
10gb|AY219674.1| Prionailurus planiceps Smcy gene, intron 4, compl... 40 4.7
11gb|AY219673.1| Leptailurus serval Smcy gene, intron 4, complete ... 40 4.7
12gb|AY219672.1| Caracal caracal Smcy gene, intron 4, complete seq... 40 4.7
13gb|AY219671.1| Profelis aurata Smcy gene, intron 4, complete seq... 40 4.7
14gb|AY219670.1| Otocolobus manul Smcy gene, intron 4, complete se... 40 4.7
15gb|AY219668.1| Lynx pardinus Smcy gene, intron 4, complete sequence 40 4.7
16gb|AY219667.1| Oncifelis geoffroyi Smcy gene, intron 4, complete... 40 4.7
17gb|AY219666.1| Oncifelis colocolo Smcy gene, intron 4, complete ... 40 4.7
18gb|AY219665.1| Leopardus tigrinus Smcy gene, intron 4, complete ... 40 4.7
19gb|AY219664.1| Puma concolor Smcy gene, intron 4, complete sequence 40 4.7
20gb|AY219663.1| Herpailurus yaguarondi Smcy gene, intron 4, compl... 40 4.7
21gb|AY219662.1| Acinonyx jubatus Smcy gene, intron 4, complete se... 40 4.7
22gb|AY219661.1| Lynx rufus Smcy gene, intron 4, complete sequence 40 4.7
23gb|AY219660.1| Leopardus pardalis Smcy gene, intron 4, complete ... 40 4.7
24gb|AY219659.1| Lynx lynx Smcy gene, intron 4, complete sequence 40 4.7
25gb|AY219658.1| Lynx canadensis Smcy gene, intron 4, complete seq... 40 4.7
26gb|AY219657.1| Felis margarita Smcy gene, intron 4, complete seq... 40 4.7
27gb|AY219656.1| Felis libyca Smcy gene, intron 4, complete sequence 40 4.7
28gb|AY219655.1| Felis silvestris Smcy gene, intron 4, complete se... 40 4.7
29gb|AY219654.1| Felis nigripes Smcy gene, intron 4, complete sequ... 40 4.7
30gb|AY219653.1| Felis chaus Smcy gene, intron 4, complete sequence 40 4.7
31gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 4.7
32ref|XM_360741.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 4.7
33gb|AC116573.7| Mus musculus BAC clone RP23-114E15 from chromosom... 40 4.7
34ref|XM_571398.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 4.7
35emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome 40 4.7
36gb|AC148689.1| Macaca mulatta Major Histocompatibility Complex B... 40 4.7
37ref|XM_393474.2| PREDICTED: Apis mellifera similar to ubiquitin ... 40 4.7
38dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
39gb|AC092126.3| Homo sapiens chromosome 16 clone RP11-1114G22, co... 40 4.7
40dbj|AB188834.1| Oryza sativa (japonica cultivar-group) OsSK1 mRN... 40 4.7
41gb|AC009085.5|AC009085 Homo sapiens chromosome 16 clone RP11-368... 40 4.7
42emb|BX004867.7| Zebrafish DNA sequence from clone CH211-159K2 in... 40 4.7
43dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
44dbj|AP004774.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
45dbj|AK066687.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.7
46gb|AY518687.1| Pardofelis marmorata SMCY gene, intron 4 40 4.7
47gb|AY518686.1| Oncifelis guigna SMCY gene, intron 4 40 4.7
48gb|AY518685.1| Panthera leo SMCY gene, intron 4 40 4.7
49gb|AY518684.1| Prionailurus rubiginosa SMCY gene, intron 4 40 4.7
50gb|AY518683.1| Prionailurus bengalensis SMCY gene, intron 4 40 4.7
51gb|AY518682.1| Felis bieti SMCY gene, intron 4 40 4.7
52gb|AY518681.1| Felis catus SMCY gene, intron 4 40 4.7
53gb|AC154335.1| Mus musculus BAC clone RP24-499C1 from 13, comple... 40 4.7 
>emb|AJ410870.2|SSC410870 Sus scrofa  COX7A1 gene, CAPNS1 gene, CKAP1 gene, POLR2I gene and
             CLIPR-59 gene (partial)
          Length = 147663

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 176   acaagggttgcattcagcctga 197
             ||||||||||||||||||||||
Sbjct: 53242 acaagggttgcattcagcctga 53263
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>gb|AC110612.3| Homo sapiens BAC clone RP11-416B16 from 4, complete sequence
          Length = 158472

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 169   aaattctacaagggttgcattcagc 193
             |||||||| ||||||||||||||||
Sbjct: 37694 aaattctataagggttgcattcagc 37718
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>emb|AL831775.6| Mouse DNA sequence from clone RP23-146M22 on chromosome X, complete
             sequence
          Length = 108563

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 86    agctcctttttcagtataaag 106
             |||||||||||||||||||||
Sbjct: 99572 agctcctttttcagtataaag 99592
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>gb|AY219680.1| Panthera pardus Smcy gene, intron 4, complete sequence
          Length = 839

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 425 ttttattatttccagagcat 444
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>gb|AY219679.1| Panthera onca Smcy gene, intron 4, complete sequence
          Length = 839

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 425 ttttattatttccagagcat 444
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>gb|AY219678.1| Uncia uncia Smcy gene, intron 4, complete sequence
          Length = 841

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 426 ttttattatttccagagcat 445
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>gb|AY219677.1| Panthera tigris Smcy gene, intron 4, complete sequence
          Length = 840

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 426 ttttattatttccagagcat 445
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>gb|AY219676.1| Catopuma temminckii Smcy gene, intron 4, complete sequence
          Length = 845

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 432 ttttattatttccagagcat 451
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>gb|AY219675.1| Prionailurus viverrinus Smcy gene, intron 4, complete sequence
          Length = 841

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 427 ttttattatttccagagcat 446
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>gb|AY219674.1| Prionailurus planiceps Smcy gene, intron 4, complete sequence
          Length = 841

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 427 ttttattatttccagagcat 446
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>gb|AY219673.1| Leptailurus serval Smcy gene, intron 4, complete sequence
          Length = 832

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 418 ttttattatttccagagcat 437
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>gb|AY219672.1| Caracal caracal Smcy gene, intron 4, complete sequence
          Length = 836

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 422 ttttattatttccagagcat 441
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>gb|AY219671.1| Profelis aurata Smcy gene, intron 4, complete sequence
          Length = 835

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 421 ttttattatttccagagcat 440
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>gb|AY219670.1| Otocolobus manul Smcy gene, intron 4, complete sequence
          Length = 839

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 425 ttttattatttccagagcat 444
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>gb|AY219668.1| Lynx pardinus Smcy gene, intron 4, complete sequence
          Length = 836

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 422 ttttattatttccagagcat 441
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>gb|AY219667.1| Oncifelis geoffroyi Smcy gene, intron 4, complete sequence
          Length = 840

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 426 ttttattatttccagagcat 445
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>gb|AY219666.1| Oncifelis colocolo Smcy gene, intron 4, complete sequence
          Length = 836

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 424 ttttattatttccagagcat 443
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>gb|AY219665.1| Leopardus tigrinus Smcy gene, intron 4, complete sequence
          Length = 840

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 426 ttttattatttccagagcat 445
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>gb|AY219664.1| Puma concolor Smcy gene, intron 4, complete sequence
          Length = 836

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 427 ttttattatttccagagcat 446
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>gb|AY219663.1| Herpailurus yaguarondi Smcy gene, intron 4, complete sequence
          Length = 840

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 426 ttttattatttccagagcat 445
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>gb|AY219662.1| Acinonyx jubatus Smcy gene, intron 4, complete sequence
          Length = 845

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 431 ttttattatttccagagcat 450
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>gb|AY219661.1| Lynx rufus Smcy gene, intron 4, complete sequence
          Length = 1094

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 426 ttttattatttccagagcat 445
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>gb|AY219660.1| Leopardus pardalis Smcy gene, intron 4, complete sequence
          Length = 839

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 427 ttttattatttccagagcat 446
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>gb|AY219659.1| Lynx lynx Smcy gene, intron 4, complete sequence
          Length = 837

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 425 ttttattatttccagagcat 444
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>gb|AY219658.1| Lynx canadensis Smcy gene, intron 4, complete sequence
          Length = 882

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 428 ttttattatttccagagcat 447
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>gb|AY219657.1| Felis margarita Smcy gene, intron 4, complete sequence
          Length = 1374

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 664 ttttattatttccagagcat 683
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>gb|AY219656.1| Felis libyca Smcy gene, intron 4, complete sequence
          Length = 2567

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 56   ttttattatttccagagcat 75
            ||||||||||||||||||||
Sbjct: 1879 ttttattatttccagagcat 1898



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 663 ttttattatttccagagcat 682
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>gb|AY219655.1| Felis silvestris Smcy gene, intron 4, complete sequence
          Length = 1350

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 662 ttttattatttccagagcat 681
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>gb|AY219654.1| Felis nigripes Smcy gene, intron 4, complete sequence
          Length = 1077

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 663 ttttattatttccagagcat 682
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>gb|AY219653.1| Felis chaus Smcy gene, intron 4, complete sequence
          Length = 1071

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 657 ttttattatttccagagcat 676
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>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete
               sequence
          Length = 1438950

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 83      cacagctcctttttcagtat 102
               ||||||||||||||||||||
Sbjct: 1271603 cacagctcctttttcagtat 1271622
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>ref|XM_360741.1| Magnaporthe grisea 70-15 hypothetical protein (MG03284.4) partial
            mRNA
          Length = 2691

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   ttattatttccagagcatgc 77
            ||||||||||||||||||||
Sbjct: 2512 ttattatttccagagcatgc 2531
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>gb|AC116573.7| Mus musculus BAC clone RP23-114E15 from chromosome 6, complete sequence
          Length = 211910

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 268   gacaaaattcttaatttttt 287
             ||||||||||||||||||||
Sbjct: 91133 gacaaaattcttaatttttt 91114
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>ref|XM_571398.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNF04390) partial mRNA
          Length = 2294

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 83   cacagctcctttttcagtat 102
            ||||||||||||||||||||
Sbjct: 2255 cacagctcctttttcagtat 2236
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>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 275     ttcttaattttttgcagggc 294
               ||||||||||||||||||||
Sbjct: 2565641 ttcttaattttttgcagggc 2565660
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>gb|AC148689.1| Macaca mulatta Major Histocompatibility Complex BAC MMU222I18, complete
             sequence
          Length = 174202

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   aagtgaagatacaagggaca 153
             ||||||||||||||||||||
Sbjct: 71936 aagtgaagatacaagggaca 71955
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>ref|XM_393474.2| PREDICTED: Apis mellifera similar to ubiquitin specific protease 48
            (LOC409985), partial mRNA
          Length = 3186

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 35   cattaactccatccgctattcttttatt 62
            |||||||||||||| | |||||||||||
Sbjct: 1153 cattaactccatcctcgattcttttatt 1126
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                            
Query: 301      agcaatatcagtcggggttagctgagagacatcatcatgaccct 344
                |||||| ||||| || |||||||  || ||||||||||||||||
Sbjct: 31512467 agcaatgtcagttggtgttagcttcgatacatcatcatgaccct 31512424
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>gb|AC092126.3| Homo sapiens chromosome 16 clone RP11-1114G22, complete sequence
          Length = 148883

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 267  tgacaaaattcttaattttt 286
            ||||||||||||||||||||
Sbjct: 7458 tgacaaaattcttaattttt 7439
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>dbj|AB188834.1| Oryza sativa (japonica cultivar-group) OsSK1 mRNA for shikimate
           kinase 1, complete cds
          Length = 927

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 301 agcaatatcagtcggggttagctgagagacatcatcatgaccct 344
           |||||| ||||| || |||||||  || ||||||||||||||||
Sbjct: 819 agcaatgtcagttggtgttagcttcgatacatcatcatgaccct 776
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>gb|AC009085.5|AC009085 Homo sapiens chromosome 16 clone RP11-368L12, complete sequence
          Length = 155860

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 267   tgacaaaattcttaattttt 286
             ||||||||||||||||||||
Sbjct: 80951 tgacaaaattcttaattttt 80932
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>emb|BX004867.7| Zebrafish DNA sequence from clone CH211-159K2 in linkage group 14,
             complete sequence
          Length = 160087

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 269   acaaaattcttaattttttg 288
             ||||||||||||||||||||
Sbjct: 26714 acaaaattcttaattttttg 26733
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>dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0078N11
          Length = 155168

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                          
Query: 301    agcaatatcagtcggggttagctgagagacatcatcatgaccct 344
              |||||| ||||| || |||||||  || ||||||||||||||||
Sbjct: 147864 agcaatgtcagttggtgttagcttcgatacatcatcatgaccct 147821
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>dbj|AP004774.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0431B06
          Length = 154796

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 301  agcaatatcagtcggggttagctgagagacatcatcatgaccct 344
            |||||| ||||| || |||||||  || ||||||||||||||||
Sbjct: 3027 agcaatgtcagttggtgttagcttcgatacatcatcatgaccct 2984
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>dbj|AK066687.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074E04, full
            insert sequence
          Length = 1356

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                        
Query: 301  agcaatatcagtcggggttagctgagagacatcatcatgaccct 344
            |||||| ||||| || |||||||  || ||||||||||||||||
Sbjct: 1088 agcaatgtcagttggtgttagcttcgatacatcatcatgaccct 1045
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>gb|AY518687.1| Pardofelis marmorata SMCY gene, intron 4
          Length = 791

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 426 ttttattatttccagagcat 445
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>gb|AY518686.1| Oncifelis guigna SMCY gene, intron 4
          Length = 791

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 425 ttttattatttccagagcat 444
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>gb|AY518685.1| Panthera leo SMCY gene, intron 4
          Length = 791

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 425 ttttattatttccagagcat 444
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>gb|AY518684.1| Prionailurus rubiginosa SMCY gene, intron 4
          Length = 791

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 425 ttttattatttccagagcat 444
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>gb|AY518683.1| Prionailurus bengalensis SMCY gene, intron 4
          Length = 794

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 428 ttttattatttccagagcat 447
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>gb|AY518682.1| Felis bieti SMCY gene, intron 4
          Length = 1287

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 662 ttttattatttccagagcat 681
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>gb|AY518681.1| Felis catus SMCY gene, intron 4
          Length = 1301

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  ttttattatttccagagcat 75
           ||||||||||||||||||||
Sbjct: 661 ttttattatttccagagcat 680
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>gb|AC154335.1| Mus musculus BAC clone RP24-499C1 from 13, complete sequence
          Length = 177948

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    aatgaatcaataagggtgag 126
              ||||||||||||||||||||
Sbjct: 156497 aatgaatcaataagggtgag 156478


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,823,614
Number of Sequences: 3902068
Number of extensions: 3823614
Number of successful extensions: 73915
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73816
Number of HSP's gapped (non-prelim): 99
length of query: 356
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 334
effective length of database: 17,147,199,772
effective search space: 5727164723848
effective search space used: 5727164723848
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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