ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart58a06 |
|---|---|
| Clone Library Name | barley_pub |
>BPA1_STRAU (P33912) Non-haem bromoperoxidase BPO-A1 (EC 1.11.1.-) (Bromide| peroxidase) (BPO1) Length = 274 Score = 30.0 bits (66), Expect = 1.5 Identities = 23/78 (29%), Positives = 34/78 (43%) Frame = +3 Query: 117 FHGCNTQYNKVQHSRA*YYWYKAMSK**QNCWTITPPEKCKDSYS*TSLTCHPQALN*SD 296 F N NKV +WY AM++ TI +C D++ T T + L D Sbjct: 162 FFSANRPGNKVTQGNKDAFWYMAMAQ------TIEGGVRCVDAFGYTDFT---EDLKKFD 212 Query: 297 SRSSLLFVHADLDAIIPV 350 + L VH D D ++P+ Sbjct: 213 IPT--LVVHGDDDQVVPI 228
>NPY5R_RAT (Q63634) Neuropeptide Y receptor type 5 (NPY5-R) (NPY-Y5 receptor)| (Y5 receptor) Length = 456 Score = 28.9 bits (63), Expect = 3.2 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 283 STNLTADQAYFLFTQIWTRSF 345 S NLTA+ YFL +WT F Sbjct: 159 SNNLTANHGYFLIATVWTLGF 179
>NPY5R_HUMAN (Q15761) Neuropeptide Y receptor type 5 (NPY5-R) (NPY-Y5 receptor)| (Y5 receptor) (NPYY5) Length = 455 Score = 28.9 bits (63), Expect = 3.2 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 283 STNLTADQAYFLFTQIWTRSF 345 S NLTA+ YFL +WT F Sbjct: 158 SNNLTANHGYFLIATVWTLGF 178
>NPY5R_MOUSE (O70342) Neuropeptide Y receptor type 5 (NPY5-R) (NPY-Y5 receptor)| (Y5 receptor) Length = 466 Score = 28.9 bits (63), Expect = 3.2 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 283 STNLTADQAYFLFTQIWTRSF 345 S NLTA+ YFL +WT F Sbjct: 169 SNNLTANHGYFLIATVWTLGF 189
>NPY5R_CANFA (O62729) Neuropeptide Y receptor type 5 (NPY5-R) (NPY-Y5 receptor)| (Y5 receptor) (NPYY5) Length = 446 Score = 28.9 bits (63), Expect = 3.2 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 283 STNLTADQAYFLFTQIWTRSF 345 S NLTA+ YFL +WT F Sbjct: 148 SNNLTANHGYFLIATVWTLGF 168
>SNAA2_ARATH (Q9SPE6) Alpha-soluble NSF attachment protein 2 (Alpha-SNAP2)| (N-ethylmaleimide-sensitive factor attachment protein, alpha 2) Length = 289 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = +1 Query: 103 CKQDYSMGVTLNTTKFSTLEPSITGTRQCQ 192 CK D + +T K+ L+P+ TGTR+C+ Sbjct: 205 CKADV-VSITNALEKYQDLDPTFTGTRECK 233
>SYD_SHISS (Q3Z2M4) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 590 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +2 Query: 197 VAKLLDNHTSREVQRLLFINQSYLPPASAQLI*QQIKLTFCSRRFGRDHSSL 352 V L NH + E RL + P AQ + + K+T RRF DH L Sbjct: 107 VLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFL 158
>SYD_SHIFL (Q7UAE6) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 590 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +2 Query: 197 VAKLLDNHTSREVQRLLFINQSYLPPASAQLI*QQIKLTFCSRRFGRDHSSL 352 V L NH + E RL + P AQ + + K+T RRF DH L Sbjct: 107 VLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFL 158
>SYD_SHIDS (Q32H95) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 590 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +2 Query: 197 VAKLLDNHTSREVQRLLFINQSYLPPASAQLI*QQIKLTFCSRRFGRDHSSL 352 V L NH + E RL + P AQ + + K+T RRF DH L Sbjct: 107 VLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFL 158
>SYD_SHIBS (Q322D4) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 590 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +2 Query: 197 VAKLLDNHTSREVQRLLFINQSYLPPASAQLI*QQIKLTFCSRRFGRDHSSL 352 V L NH + E RL + P AQ + + K+T RRF DH L Sbjct: 107 VLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFL 158
>SYD_ECOLI (P21889) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 590 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +2 Query: 197 VAKLLDNHTSREVQRLLFINQSYLPPASAQLI*QQIKLTFCSRRFGRDHSSL 352 V L NH + E RL + P AQ + + K+T RRF DH L Sbjct: 107 VLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFL 158
>SYD_ECOL6 (Q8FGQ9) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 590 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +2 Query: 197 VAKLLDNHTSREVQRLLFINQSYLPPASAQLI*QQIKLTFCSRRFGRDHSSL 352 V L NH + E RL + P AQ + + K+T RRF DH L Sbjct: 107 VLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFL 158
>SYD_ECO57 (Q8XCI7) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 590 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +2 Query: 197 VAKLLDNHTSREVQRLLFINQSYLPPASAQLI*QQIKLTFCSRRFGRDHSSL 352 V L NH + E RL + P AQ + + K+T RRF DH L Sbjct: 107 VLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFL 158
>NPY5R_PIG (O97969) Neuropeptide Y receptor type 5 (NPY5-R) (NPY-Y5 receptor)| (Y5 receptor) Length = 446 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = +1 Query: 283 STNLTADQAYFLFTQIWT 336 S NLTA+ YFL +WT Sbjct: 148 SNNLTANHGYFLIATVWT 165 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,576,810 Number of Sequences: 219361 Number of extensions: 626084 Number of successful extensions: 1192 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1185 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1192 length of database: 80,573,946 effective HSP length: 94 effective length of database: 59,954,012 effective search space used: 1438896288 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
