ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart58a02 |
|---|---|
| Clone Library Name | barley_pub |
>PPOX_MOUSE (P51175) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 477 Score = 31.6 bits (70), Expect = 0.48 Identities = 17/36 (47%), Positives = 21/36 (58%) Frame = +3 Query: 231 GCHRRRPSRFLAAKGFLYPLPPCAATSIRGWLRPSP 338 G H +RFL G L+PLP + +RG LRPSP Sbjct: 89 GDHPAAQNRFLYVGGTLHPLP----SGLRGLLRPSP 120
>HYD_DROME (P51592) Ubiquitin--protein ligase hyd (EC 6.3.2.-) (Protein| hyperplastic discs) Length = 2885 Score = 30.8 bits (68), Expect = 0.81 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Frame = +2 Query: 20 IPVPNMKT-DENV*AAVDGPSTSYSTYTQLKLQGGFSNFKCRCFIDDTRSRLRAAHCRIQ 196 +P+ + KT D NV +G ST + Y QLK + G +FK D +S+ Sbjct: 2122 VPIDSSKTGDGNVTNKAEG-STDSNIYVQLKKKQGSDDFKSHKEADGNQSKYEKVVLMET 2180 Query: 197 EDFLLSCRRSNR-LPSKAPLTISRCKRLSLSFAT 295 +D L S +S L + P I + S+S AT Sbjct: 2181 DDSLPSTSKSTEALMATRPEVIIAPNKASVSPAT 2214
>PPOX_MACFA (Q60HD5) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 477 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/36 (47%), Positives = 20/36 (55%) Frame = +3 Query: 231 GCHRRRPSRFLAAKGFLYPLPPCAATSIRGWLRPSP 338 G H +RFL G L+ LP T +RG LRPSP Sbjct: 89 GDHPAAQNRFLYVGGALHALP----TGLRGLLRPSP 120
>PPOX_HUMAN (P50336) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 477 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/36 (47%), Positives = 20/36 (55%) Frame = +3 Query: 231 GCHRRRPSRFLAAKGFLYPLPPCAATSIRGWLRPSP 338 G H +RFL G L+ LP T +RG LRPSP Sbjct: 89 GDHPAAQNRFLYVGGALHALP----TGLRGLLRPSP 120
>CS015_MACFA (Q4R6B2) Protein C19orf15 homolog precursor| Length = 1159 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = -3 Query: 374 PCLNTTVICMISWAGPQPTSNGSCCTR 294 PC+ V C +SW P P NGS TR Sbjct: 158 PCIAEEV-CSMSWYTPMPIKNGSVVTR 183
>SAP1_YEAST (P39955) Protein SAP1| Length = 897 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +3 Query: 39 RQMKMFRPP*TGRALLIRRTHNSNYREAFQISSADVS*TTLG 164 R M +F PP TG+ +L R ++ F IS++ ++ LG Sbjct: 639 RGMLLFGPPGTGKTMLARAVATESHSTFFSISASSLTSKYLG 680
>CUTI_PHYCP (P41754) Putative cutinase (EC 3.1.1.74) (Cutin hydrolase)| Length = 210 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +2 Query: 224 SNRLPSKAPLTISRCKRLSLSFATLCSNFHSRLAAAQPRKSC 349 S RLP K SR R + ++ CSN S A++ R+SC Sbjct: 27 SERLPLKRDEPGSRSMRSTFIPSSQCSNLSSATASSSRRRSC 68
>CHN_DROME (Q7YU81) Protein charlatan| Length = 1108 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = -1 Query: 232 PVRAPAGEQEIFLNAAVSRAQSRPSVVYETSA 137 P P GEQ F N + PS+ YE+SA Sbjct: 60 PTAVPEGEQRSFTNLQQLDRSAAPSIEYESSA 91
>YEM7_YEAST (P40025) Hypothetical 37.7 kDa protein in PIP1-GLN3 intergenic| region Length = 321 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +2 Query: 107 KLQGGFSNFKCRCFIDDTRSRLRAA 181 KLQ G S+F FIDD S +R+A Sbjct: 214 KLQSGLSSFANAWFIDDNESNVRSA 238
>PBPE_BACSU (P32959) Penicillin-binding protein 4* (PBP 4*) (PBP 4A)| Length = 451 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = -2 Query: 381 INAMLKHNRNMHDFLGWAAANLEWKLLHKVA--KDKESLLQREIVRGAFD 238 I +L H + D++GW AN + HK+A +D +L E + G F+ Sbjct: 100 IRHLLNHTSGLPDYMGWFFANWD---SHKIAVNQDIVDMLMNEGLSGYFE 146
>ARHG6_RAT (Q5XXR3) Rho guanine nucleotide exchange factor 6 (Rac/Cdc42| guanine nucleotide exchange factor 6) Length = 772 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/53 (33%), Positives = 26/53 (49%) Frame = +2 Query: 182 HCRIQEDFLLSCRRSNRLPSKAPLTISRCKRLSLSFATLCSNFHSRLAAAQPR 340 HC +DF + NRL +K P + C LS + ++ CS S + QPR Sbjct: 529 HCNNNQDFQEWMEQLNRL-TKGPAS---CSSLSKTSSSSCSTHSSFSSTGQPR 577
>SSB1_STRCO (Q9KYI9) Single-stranded DNA-binding protein 1 (SSB 1)| (Helix-destabilizing protein 1) Length = 156 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = +3 Query: 105 SNYREAFQISSADVS*TTLGLDCARLTAAFRKISCSPA 218 ++ RE +SAD+ +G D AR TAAFR+ + + A Sbjct: 85 TDVREGQSRTSADIDAVAIGHDLARGTAAFRRTARTEA 122
>ESCO2_HUMAN (Q56NI9) N-acetyltransferase ESCO2 (EC 2.3.1.-) (Establishment of| cohesion 1 homolog 2) (ECO1 homolog 2) Length = 601 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Frame = +2 Query: 134 KCRCFIDDTRSRLRAAHCRIQEDFLLSCRRS---NRLPS 241 K CF ++ HC QE F+LS ++ NRLPS Sbjct: 32 KKHCFYQNSDKNEENLHCSQQEHFVLSALKTTEINRLPS 70
>CCHCR_GORGO (Q8HZ59) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/48 (39%), Positives = 25/48 (52%) Frame = -1 Query: 313 MEVAAQGGKG*RKPFAARNREGRLRWQPVRAPAGEQEIFLNAAVSRAQ 170 +EV G KG + + R +E R RWQ A A EQ + AVS +Q Sbjct: 394 VEVERMGAKGLQLELS-RAQEARCRWQQQTASAEEQLRLVVNAVSSSQ 440
>INU2_ARTGO (P19870) Inulin fructotransferase [DFA-I-forming] (EC 4.2.2.17)| (Inulin fructotransferase [depolymerizing, difructofuranose-1,2':2',1-dianhydride-forming]) Length = 392 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/33 (45%), Positives = 20/33 (60%) Frame = +2 Query: 227 NRLPSKAPLTISRCKRLSLSFATLCSNFHSRLA 325 N L A +T+S C R+S+S L SNF S +A Sbjct: 237 NSLLWAANITLSDCNRVSISSNKLLSNFPSMVA 269
>TSHR_SHEEP (P56495) Thyrotropin receptor precursor (TSH-R)| (Thyroid-stimulating hormone receptor) Length = 764 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = +2 Query: 185 CRIQEDFLLSCRRSNRLPSKAPLT 256 CR ++DF ++C+ R+PS P T Sbjct: 31 CRQEDDFRVTCKDIQRIPSLPPST 54
>TSHR_HUMAN (P16473) Thyrotropin receptor precursor (TSH-R)| (Thyroid-stimulating hormone receptor) Length = 764 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +2 Query: 185 CRIQEDFLLSCRRSNRLPSKAPLTISRCKRLSLSFATLCSNFHSRL 322 C +EDF ++C+ R+PS P T K + T+ S+ S L Sbjct: 31 CHQEEDFRVTCKDIQRIPSLPPST-QTLKLIETHLRTIPSHAFSNL 75
>TBB_PHYCI (O59837) Tubulin beta chain (Beta tubulin)| Length = 444 Score = 27.3 bits (59), Expect = 9.0 Identities = 8/23 (34%), Positives = 14/23 (60%) Frame = -1 Query: 109 FELCVRRIRSARPVYGGLNIFIC 41 +++C R ++ P YG LN +C Sbjct: 208 YDICFRTLKLTNPTYGDLNHLVC 230
>TBB_ACHKL (P20802) Tubulin beta chain (Beta tubulin)| Length = 444 Score = 27.3 bits (59), Expect = 9.0 Identities = 8/23 (34%), Positives = 14/23 (60%) Frame = -1 Query: 109 FELCVRRIRSARPVYGGLNIFIC 41 +++C R ++ P YG LN +C Sbjct: 207 YDICFRTLKLTNPTYGDLNHLVC 229
>TBB3_PORPU (P50261) Tubulin beta-3 chain (Beta-3 tubulin)| Length = 445 Score = 27.3 bits (59), Expect = 9.0 Identities = 8/24 (33%), Positives = 15/24 (62%) Frame = -1 Query: 109 FELCVRRIRSARPVYGGLNIFICL 38 +++C R ++ P YG LN +C+ Sbjct: 208 YDICFRTLKLTTPTYGDLNHLVCV 231
>ZRAR_ECOLI (P14375) Transcriptional regulatory protein zraR| Length = 441 Score = 27.3 bits (59), Expect = 9.0 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Frame = +3 Query: 69 TGRALLIRRTHNSNYREAFQISSADVS*TTLGLDCARLTAAF--RKISCSPAGARTGCHR 242 TG+ L+ R H S+ R + + L+CA L + ++ GA TG + Sbjct: 173 TGKELVARAIHASSARSEKPLVT---------LNCAALNESLLESELFGHEKGAFTGADK 223 Query: 243 RRPSRFLAAKG 275 RR RF+ A G Sbjct: 224 RREGRFVEADG 234
>ZRAR_ECO57 (Q8X613) Transcriptional regulatory protein zraR| Length = 441 Score = 27.3 bits (59), Expect = 9.0 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Frame = +3 Query: 69 TGRALLIRRTHNSNYREAFQISSADVS*TTLGLDCARLTAAF--RKISCSPAGARTGCHR 242 TG+ L+ R H S+ R + + L+CA L + ++ GA TG + Sbjct: 173 TGKELVARAIHASSARSEKPLVT---------LNCAALNESLLESELFGHEKGAFTGADK 223 Query: 243 RRPSRFLAAKG 275 RR RF+ A G Sbjct: 224 RREGRFVEADG 234
>CCHCR_PANTR (Q8HZ60) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 27.3 bits (59), Expect = 9.0 Identities = 19/48 (39%), Positives = 25/48 (52%) Frame = -1 Query: 313 MEVAAQGGKG*RKPFAARNREGRLRWQPVRAPAGEQEIFLNAAVSRAQ 170 +EV G KG + + R +E R RWQ A A EQ + AVS +Q Sbjct: 394 VEVERMGAKGLQLELS-RAQEARRRWQQQTASAEEQLRLVVNAVSSSQ 440
>CCHCR_PANPA (Q8HZ57) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 27.3 bits (59), Expect = 9.0 Identities = 19/48 (39%), Positives = 25/48 (52%) Frame = -1 Query: 313 MEVAAQGGKG*RKPFAARNREGRLRWQPVRAPAGEQEIFLNAAVSRAQ 170 +EV G KG + + R +E R RWQ A A EQ + AVS +Q Sbjct: 394 VEVERMGAKGLQLELS-RAQEARRRWQQQTASAEEQLRLVVNAVSSSQ 440
>CCHCR_HUMAN (Q8TD31) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) (Putative gene 8 protein) (Pg8) Length = 782 Score = 27.3 bits (59), Expect = 9.0 Identities = 19/48 (39%), Positives = 25/48 (52%) Frame = -1 Query: 313 MEVAAQGGKG*RKPFAARNREGRLRWQPVRAPAGEQEIFLNAAVSRAQ 170 +EV G KG + + R +E R RWQ A A EQ + AVS +Q Sbjct: 394 VEVERMGAKGLQLELS-RAQEARRRWQQQTASAEEQLRLVVNAVSSSQ 440
>ACTN_DICDI (P05095) Alpha-actinin, non-muscular (F-actin cross linking| protein) Length = 862 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/50 (30%), Positives = 23/50 (46%) Frame = -2 Query: 354 NMHDFLGWAAANLEWKLLHKVAKDKESLLQREIVRGAFDGSLFERLQESK 205 N H + L+W L+ +AK E +++ EI+ G E L E K Sbjct: 687 NKHTQHSLESLKLKWDKLNTLAKKNEQVVEGEILAKQLTGVTAEELSEFK 736
>TBB4_PORPU (P50262) Tubulin beta-4 chain (Beta-4 tubulin)| Length = 451 Score = 27.3 bits (59), Expect = 9.0 Identities = 8/24 (33%), Positives = 15/24 (62%) Frame = -1 Query: 109 FELCVRRIRSARPVYGGLNIFICL 38 +++C R ++ P YG LN +C+ Sbjct: 208 YDICFRTLKLTTPTYGDLNHLVCV 231
>COBD_LEPIN (Q8EXQ8) Cobalamin biosynthesis protein cobD| Length = 315 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = -2 Query: 381 INAMLKHNRNMHDFLGWAAANLEWKLLHK-VAKDKESLLQREIVRGAFDGS 232 I M+ H++ ++D L L K + K VA+D E+L + EI+R + + Sbjct: 94 IRDMIDHSKEVYDALVQTNLPLARKKVSKIVARDTENLSESEIIRACVEST 144
>COBD_LEPIC (Q75FR2) Cobalamin biosynthesis protein cobD| Length = 315 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%) Frame = -2 Query: 381 INAMLKHNRNMHDFLGWAAANLEWKLLHK-VAKDKESLLQREIVRGAFDGS 232 I M+ H++ ++D L L K + K VA+D E+L + EI+R + + Sbjct: 94 IRDMIDHSKEVYDALVQTNLPLARKKVSKIVARDTENLSESEIIRACVEST 144
>VP40_EBV (P03234) Capsid protein P40 (Virion structural protein BVRF2)| (EC-RF3 and EC-RF3A) [Contains: Capsid protein VP24 (Assemblin) (Protease) (EC 3.4.21.97); Capsid protein VP22A; C-terminal peptide] Length = 605 Score = 27.3 bits (59), Expect = 9.0 Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 3/53 (5%) Frame = +3 Query: 210 SPAGARTGCHRRRPSRFLAAKGFLY---PLPPCAATSIRGWLRPSPGNHAYYG 359 SP G G P FLA Y P PP A + G P P YYG Sbjct: 345 SPGGYYAGPAGGDPGAFLAMDAHTYHPHPHPPPAYFGLPGLFGPPPPVPPYYG 397
>PRP1_BOMMO (Q27451) Phenoloxidase subunit 1 precursor (EC 1.14.18.1)| (Tyrosinase 1) (PO 1) Length = 685 Score = 27.3 bits (59), Expect = 9.0 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Frame = +3 Query: 204 SCSPAGARTGCHRRR-PSRFLAAKGFLYPLPPCAATSIRGWLRPSPGNHAYYGCV 365 SC+ A + G R+ P R A GF + P AAT++ +LRP N A C+ Sbjct: 622 SCNDAASYCGIRDRKYPDR--RAMGFPFDRPAPAATTLSDFLRP---NMAVRDCI 671 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,986,439 Number of Sequences: 219361 Number of extensions: 1160404 Number of successful extensions: 3577 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3497 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3576 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
