>gb|BT009058.1| Triticum aestivum clone wdr1f.pk003.b21:fis, full insert mRNA
           sequence
          Length = 1157

 Score =  339 bits (171), Expect = 4e-90
 Identities = 210/223 (94%)
 Strand = Plus / Minus

                                                                       
Query: 178 ggctcactgccgcattcaggaagatttcttgctctcctgcaggcgctcgaacaggctgcc 237
           ||||||||||| |||||||| |||||||||||| |||||||| |||||||||||||||||
Sbjct: 887 ggctcactgccacattcaggtagatttcttgctttcctgcagacgctcgaacaggctgcc 828

                                                                       
Query: 238 atcgaaggcgcccctcacgatttctcgctgcaaaaggctttctttatcctttgccacctt 297
           |||||||||||||| |||||||||||||||||||| || ||| |||||||||||||||||
Sbjct: 827 atcgaaggcgccccgcacgatttctcgctgcaaaaagccttcgttatcctttgccacctt 768

                                                                       
Query: 298 gtgcagcaacttccattcgaggttggctgcggcccagcccaggaaatcatgcatattacg 357
           ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||
Sbjct: 767 gtgcagcaacttccattcgaggttggccgcggcccagcccaggaaatcatacatattgcg 708

                                                      
Query: 358 gttgtgtttaagcatggcgttaatctcatcttctgataaagca 400
           ||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 707 gttgtatttaagcatggcgttaatctcatcttctgacaaagca 665



 Score =  139 bits (70), Expect = 8e-30
 Identities = 139/161 (86%), Gaps = 7/161 (4%)
 Strand = Plus / Minus

                                                                        
Query: 1    gctaccaataacagtacaaattccagttccaaatatgaagacagatgaaaatgtttaggc 60
            ||||||||||| | ||||||||||||||| |||||  ||  || ||||||||||||||||
Sbjct: 1046 gctaccaataaaaatacaaattccagttcaaaataacaatgcaaatgaaaatgtttaggc 987

                                                                        
Query: 61   cgccgtagacgggccgagcacttcttattcgacgtacacacaactcaaacta-----cag 115
            ||||| ||||||||| | ||||||||||| |||||  |||||||||||||||     |||
Sbjct: 986  cgccgcagacgggccaaacacttcttatttgacgt--acacaactcaaactacaatgcag 929

                                                     
Query: 116  ggaggcttttcaaatttcaagtgcagatgtttcatagacga 156
            |||||||||||||||||||||||||||| ||| | ||||||
Sbjct: 928  ggaggcttttcaaatttcaagtgcagatattttagagacga 888

>ref|NM_187692.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 816

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 83/96 (86%)
 Strand = Plus / Minus

                                                                       
Query: 199 agatttcttgctctcctgcaggcgctcgaacaggctgccatcgaaggcgcccctcacgat 258
           |||||||||||| ||||| || ||||| ||||||||||||||||||||||| || ||  |
Sbjct: 810 agatttcttgctgtcctgaagtcgctcaaacaggctgccatcgaaggcgcctctaacagt 751

                                               
Query: 259 ttctcgctgcaaaaggctttctttatcctttgccac 294
           |||||| ||||| || | |||||||||||| |||||
Sbjct: 750 ttctcgttgcaacagcccttctttatccttggccac 715

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 83/96 (86%)
 Strand = Plus / Minus

                                                                           
Query: 199     agatttcttgctctcctgcaggcgctcgaacaggctgccatcgaaggcgcccctcacgat 258
               |||||||||||| ||||| || ||||| ||||||||||||||||||||||| || ||  |
Sbjct: 6388675 agatttcttgctgtcctgaagtcgctcaaacaggctgccatcgaaggcgcctctaacagt 6388616

                                                   
Query: 259     ttctcgctgcaaaaggctttctttatcctttgccac 294
               |||||| ||||| || | |||||||||||| |||||
Sbjct: 6388615 ttctcgttgcaacagcccttctttatccttggccac 6388580

>gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09,
             complete sequence
          Length = 146568

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 83/96 (86%)
 Strand = Plus / Minus

                                                                         
Query: 199   agatttcttgctctcctgcaggcgctcgaacaggctgccatcgaaggcgcccctcacgat 258
             |||||||||||| ||||| || ||||| ||||||||||||||||||||||| || ||  |
Sbjct: 68801 agatttcttgctgtcctgaagtcgctcaaacaggctgccatcgaaggcgcctctaacagt 68742

                                                 
Query: 259   ttctcgctgcaaaaggctttctttatcctttgccac 294
             |||||| ||||| || | |||||||||||| |||||
Sbjct: 68741 ttctcgttgcaacagcccttctttatccttggccac 68706

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 83/96 (86%)
 Strand = Plus / Minus

                                                                           
Query: 199     agatttcttgctctcctgcaggcgctcgaacaggctgccatcgaaggcgcccctcacgat 258
               |||||||||||| ||||| || ||||| ||||||||||||||||||||||| || ||  |
Sbjct: 6387888 agatttcttgctgtcctgaagtcgctcaaacaggctgccatcgaaggcgcctctaacagt 6387829

                                                   
Query: 259     ttctcgctgcaaaaggctttctttatcctttgccac 294
               |||||| ||||| || | |||||||||||| |||||
Sbjct: 6387828 ttctcgttgcaacagcccttctttatccttggccac 6387793

>gb|AY104352.1| Zea mays PCO064372 mRNA sequence
          Length = 912

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 257 atttctcgctgcaaaaggctttctttatcctttgccac 294
           |||||||||||||| ||||  ||||| |||||||||||
Sbjct: 889 atttctcgctgcaacaggccatctttgtcctttgccac 852

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 161     cggtctcgactgcgcgcggct 181
               |||||||||||||||||||||
Sbjct: 1408707 cggtctcgactgcgcgcggct 1408727

>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome
          Length = 2414465

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 374    gcgttaatctcatcttctgataaag 398
              ||||||||||||||||||| |||||
Sbjct: 302453 gcgttaatctcatcttctgttaaag 302477

>gb|AC068647.10| Homo sapiens 3 BAC RP11-64D22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 132745

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     aataacagtacaaattccagt 27
             |||||||||||||||||||||
Sbjct: 39392 aataacagtacaaattccagt 39372

>gb|AC125629.1| Homo sapiens 12 BAC RP11-359K6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 139793

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 31    aaatatgaagacagatgaaaa 51
             |||||||||||||||||||||
Sbjct: 89770 aaatatgaagacagatgaaaa 89750

>gb|AE004593.1| Pseudomonas aeruginosa PAO1, section 154 of 529 of the complete genome
          Length = 11002

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 217   caggcgctcgaacaggctgcc 237
             |||||||||||||||||||||
Sbjct: 10325 caggcgctcgaacaggctgcc 10305

>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 213     cctgcaggcgctcgaacagg 232
               ||||||||||||||||||||
Sbjct: 2927541 cctgcaggcgctcgaacagg 2927522

>gb|AC121865.2| Mus musculus BAC clone RP24-112O1 from 8, complete sequence
          Length = 178620

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 270    aaaggctttctttatccttt 289
              ||||||||||||||||||||
Sbjct: 140212 aaaggctttctttatccttt 140231

>gb|AC138453.8| Medicago truncatula clone mth2-20m14, complete sequence
          Length = 144639

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     gacagatgaaaatgtttagg 59
              ||||||||||||||||||||
Sbjct: 104112 gacagatgaaaatgtttagg 104131

>emb|AL512844.5| Human DNA sequence from clone RP11-90H3 on chromosome 1 Contains two
             matrin 3 (MATR3) pseudogenes, complete sequence
          Length = 159017

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 328   ggcccagcccaggaaatcat 347
             ||||||||||||||||||||
Sbjct: 21244 ggcccagcccaggaaatcat 21225

>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 213     cctgcaggcgctcgaacagg 232
               ||||||||||||||||||||
Sbjct: 1106069 cctgcaggcgctcgaacagg 1106050

>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 206     ttgctctcctgcaggcgctc 225
               ||||||||||||||||||||
Sbjct: 3043211 ttgctctcctgcaggcgctc 3043230

>gb|AC008360.3|AC008360 Drosophila melanogaster, chromosome 3R, region 87E-87F, BAC clone
             BACR06H18, complete sequence
          Length = 194672

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    agacagatgaaaatgtttag 58
             ||||||||||||||||||||
Sbjct: 95653 agacagatgaaaatgtttag 95634

>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 213    cctgcaggcgctcgaacagg 232
              ||||||||||||||||||||
Sbjct: 700710 cctgcaggcgctcgaacagg 700691

>gb|AC027688.5| Homo sapiens chromosome 16 clone RP11-883G14, complete sequence
          Length = 177147

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 333   agcccaggaaatcatgcatattac 356
             ||||| ||||||||||||||||||
Sbjct: 85324 agccctggaaatcatgcatattac 85301

>gb|AC023819.7| Homo sapiens chromosome 16 clone RP11-1102H15, complete sequence
          Length = 136137

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 333   agcccaggaaatcatgcatattac 356
             ||||| ||||||||||||||||||
Sbjct: 59369 agccctggaaatcatgcatattac 59346

>gb|AF274572.4| Homo sapiens chromosome X clone RP4-741O10 map q28, complete sequence
          Length = 126522

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 328   ggcccagcccaggaaatcat 347
             ||||||||||||||||||||
Sbjct: 42234 ggcccagcccaggaaatcat 42253

>emb|BX572629.8| Zebrafish DNA sequence from clone CH211-195L15 in linkage group 19,
              complete sequence
          Length = 170971

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     aagacagatgaaaatgttta 57
              ||||||||||||||||||||
Sbjct: 165213 aagacagatgaaaatgttta 165194

>gb|AE003700.3| Drosophila melanogaster chromosome 3R, section 38 of 118 of the
             complete sequence
          Length = 228324

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    agacagatgaaaatgtttag 58
             ||||||||||||||||||||
Sbjct: 22154 agacagatgaaaatgtttag 22135

>emb|CT009557.4| Pan troglodytes chromosome X clone PTB-010G23 map Xq28, complete sequence
          Length = 244504

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 328    ggcccagcccaggaaatcat 347
              ||||||||||||||||||||
Sbjct: 168335 ggcccagcccaggaaatcat 168316

>gb|AC139351.4| Mus musculus BAC clone RP24-156K15 from 8, complete sequence
          Length = 190998

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 270  aaaggctttctttatccttt 289
            ||||||||||||||||||||
Sbjct: 8400 aaaggctttctttatccttt 8419

>gb|AC003923.1|AC003923 Drosophila melanogaster (P1 DS04219 (D36)) DNA sequence, complete
             sequence
          Length = 82393

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    agacagatgaaaatgtttag 58
             ||||||||||||||||||||
Sbjct: 52874 agacagatgaaaatgtttag 52893

>emb|AL627425.15| Mouse DNA sequence from clone RP23-283L16 on chromosome 4, complete
              sequence
          Length = 226967

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     aaatatgaagacagatgaaa 50
              ||||||||||||||||||||
Sbjct: 211326 aaatatgaagacagatgaaa 211345


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,011,924
Number of Sequences: 3902068
Number of extensions: 4011924
Number of successful extensions: 75599
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75423
Number of HSP's gapped (non-prelim): 174
length of query: 400
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 378
effective length of database: 17,147,199,772
effective search space: 6481641513816
effective search space used: 6481641513816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)