ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart58a01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_192999.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 939 Score = 174 bits (88), Expect = 1e-40 Identities = 201/238 (84%), Gaps = 3/238 (1%) Strand = Plus / Minus Query: 126 agctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctggtagtag 185 |||| |||||||||||| ||||| || | ||||||| | ||||||||||||||||||||| Sbjct: 929 agcttcttgacggcctggaacctagcggtcttgtcgccgaacttggtgccctggtagtag 870 Query: 186 tccaggtagtcgccgaacctgtacggcccggggtacacctgcctcgccgtgggcgccggc 245 ||||||||||||||| ||||||||||||||||||| | || ||||| | ||||||| Sbjct: 869 tccaggtagtcgccgtacctgtacggcccggggta---cggcgccgccgccgtcgccggc 813 Query: 246 gccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcgcccttcc 305 || | ||||| || | |||||||||||||||||| || || ||||| ||||| || || Sbjct: 812 gcgatcacggcgtcgggcccggggttgtagaacgtggcgacggacaggcggcggccctcg 753 Query: 306 gcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcacctcca 363 ||| ||||||| |||||||||| |||||| |||||||||||||||| | |||||||| Sbjct: 752 gcgccggcggcgacgcggtgcacgacgctcttgtaggcgccgccgctgagcacctcca 695
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 174 bits (88), Expect = 1e-40 Identities = 201/238 (84%), Gaps = 3/238 (1%) Strand = Plus / Minus Query: 126 agctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctggtagtag 185 |||| |||||||||||| ||||| || | ||||||| | ||||||||||||||||||||| Sbjct: 22486945 agcttcttgacggcctggaacctagcggtcttgtcgccgaacttggtgccctggtagtag 22486886 Query: 186 tccaggtagtcgccgaacctgtacggcccggggtacacctgcctcgccgtgggcgccggc 245 ||||||||||||||| ||||||||||||||||||| | || ||||| | ||||||| Sbjct: 22486885 tccaggtagtcgccgtacctgtacggcccggggta---cggcgccgccgccgtcgccggc 22486829 Query: 246 gccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcgcccttcc 305 || | ||||| || | |||||||||||||||||| || || ||||| ||||| || || Sbjct: 22486828 gcgatcacggcgtcgggcccggggttgtagaacgtggcgacggacaggcggcggccctcg 22486769 Query: 306 gcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcacctcca 363 ||| ||||||| |||||||||| |||||| |||||||||||||||| | |||||||| Sbjct: 22486768 gcgccggcggcgacgcggtgcacgacgctcttgtaggcgccgccgctgagcacctcca 22486711
>dbj|AP003332.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1097D05 Length = 144879 Score = 174 bits (88), Expect = 1e-40 Identities = 201/238 (84%), Gaps = 3/238 (1%) Strand = Plus / Minus Query: 126 agctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctggtagtag 185 |||| |||||||||||| ||||| || | ||||||| | ||||||||||||||||||||| Sbjct: 2682 agcttcttgacggcctggaacctagcggtcttgtcgccgaacttggtgccctggtagtag 2623 Query: 186 tccaggtagtcgccgaacctgtacggcccggggtacacctgcctcgccgtgggcgccggc 245 ||||||||||||||| ||||||||||||||||||| | || ||||| | ||||||| Sbjct: 2622 tccaggtagtcgccgtacctgtacggcccggggta---cggcgccgccgccgtcgccggc 2566 Query: 246 gccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcgcccttcc 305 || | ||||| || | |||||||||||||||||| || || ||||| ||||| || || Sbjct: 2565 gcgatcacggcgtcgggcccggggttgtagaacgtggcgacggacaggcggcggccctcg 2506 Query: 306 gcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcacctcca 363 ||| ||||||| |||||||||| |||||| |||||||||||||||| | |||||||| Sbjct: 2505 gcgccggcggcgacgcggtgcacgacgctcttgtaggcgccgccgctgagcacctcca 2448
>dbj|AP003546.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0672C09 Length = 145655 Score = 174 bits (88), Expect = 1e-40 Identities = 201/238 (84%), Gaps = 3/238 (1%) Strand = Plus / Minus Query: 126 agctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctggtagtag 185 |||| |||||||||||| ||||| || | ||||||| | ||||||||||||||||||||| Sbjct: 111083 agcttcttgacggcctggaacctagcggtcttgtcgccgaacttggtgccctggtagtag 111024 Query: 186 tccaggtagtcgccgaacctgtacggcccggggtacacctgcctcgccgtgggcgccggc 245 ||||||||||||||| ||||||||||||||||||| | || ||||| | ||||||| Sbjct: 111023 tccaggtagtcgccgtacctgtacggcccggggta---cggcgccgccgccgtcgccggc 110967 Query: 246 gccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcgcccttcc 305 || | ||||| || | |||||||||||||||||| || || ||||| ||||| || || Sbjct: 110966 gcgatcacggcgtcgggcccggggttgtagaacgtggcgacggacaggcggcggccctcg 110907 Query: 306 gcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcacctcca 363 ||| ||||||| |||||||||| |||||| |||||||||||||||| | |||||||| Sbjct: 110906 gcgccggcggcgacgcggtgcacgacgctcttgtaggcgccgccgctgagcacctcca 110849
>dbj|AK102472.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094H01, full insert sequence Length = 1183 Score = 174 bits (88), Expect = 1e-40 Identities = 201/238 (84%), Gaps = 3/238 (1%) Strand = Plus / Minus Query: 126 agctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctggtagtag 185 |||| |||||||||||| ||||| || | ||||||| | ||||||||||||||||||||| Sbjct: 1051 agcttcttgacggcctggaacctagcggtcttgtcgccgaacttggtgccctggtagtag 992 Query: 186 tccaggtagtcgccgaacctgtacggcccggggtacacctgcctcgccgtgggcgccggc 245 ||||||||||||||| ||||||||||||||||||| | || ||||| | ||||||| Sbjct: 991 tccaggtagtcgccgtacctgtacggcccggggta---cggcgccgccgccgtcgccggc 935 Query: 246 gccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcgcccttcc 305 || | ||||| || | |||||||||||||||||| || || ||||| ||||| || || Sbjct: 934 gcgatcacggcgtcgggcccggggttgtagaacgtggcgacggacaggcggcggccctcg 875 Query: 306 gcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcacctcca 363 ||| ||||||| |||||||||| |||||| |||||||||||||||| | |||||||| Sbjct: 874 gcgccggcggcgacgcggtgcacgacgctcttgtaggcgccgccgctgagcacctcca 817
>gb|DQ428549.1| Sorghum propinquum locus PRC1149 genomic sequence Length = 632 Score = 99.6 bits (50), Expect = 6e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 120 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 179 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 338 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 279 Query: 180 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 221 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 278 tagtactcgaggtagtccccgaacctgtagggtccggggtac 237 Score = 46.1 bits (23), Expect = 0.079 Identities = 98/123 (79%) Strand = Plus / Minus Query: 239 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 298 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggctacggacaggcggcg 136 Query: 299 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 358 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 359 ctc 361 ||| Sbjct: 75 ctc 73
>gb|DQ428548.1| Sorghum bicolor voucher PI585454 locus PRC1149 genomic sequence Length = 635 Score = 99.6 bits (50), Expect = 6e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 120 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 179 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 180 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 221 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.079 Identities = 98/123 (79%) Strand = Plus / Minus Query: 239 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 298 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggcgacggacaggcggcg 136 Query: 299 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 358 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 359 ctc 361 ||| Sbjct: 75 ctc 73
>gb|DQ428547.1| Sorghum bicolor voucher PI267539 locus PRC1149 genomic sequence Length = 635 Score = 99.6 bits (50), Expect = 6e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 120 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 179 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 180 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 221 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.079 Identities = 98/123 (79%) Strand = Plus / Minus Query: 239 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 298 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggcgacggacaggcggcg 136 Query: 299 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 358 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 359 ctc 361 ||| Sbjct: 75 ctc 73
>gb|DQ428546.1| Sorghum bicolor voucher PI267408 locus PRC1149 genomic sequence Length = 634 Score = 99.6 bits (50), Expect = 6e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 120 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 179 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 180 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 221 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.079 Identities = 98/123 (79%) Strand = Plus / Minus Query: 239 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 298 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggctacggacaggcggcg 136 Query: 299 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 358 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 359 ctc 361 ||| Sbjct: 75 ctc 73
>gb|DQ428545.1| Sorghum bicolor voucher PI221607 locus PRC1149 genomic sequence Length = 635 Score = 99.6 bits (50), Expect = 6e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 120 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 179 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 180 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 221 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.079 Identities = 98/123 (79%) Strand = Plus / Minus Query: 239 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 298 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggcgacggacaggcggcg 136 Query: 299 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 358 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 359 ctc 361 ||| Sbjct: 75 ctc 73
>gb|DQ428544.1| Sorghum bicolor voucher PI152702 locus PRC1149 genomic sequence Length = 640 Score = 99.6 bits (50), Expect = 6e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 120 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 179 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 180 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 221 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.079 Identities = 98/123 (79%) Strand = Plus / Minus Query: 239 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 298 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggcgacggacaggcggcg 136 Query: 299 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 358 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 359 ctc 361 ||| Sbjct: 75 ctc 73
>gb|DQ428543.1| Sorghum bicolor voucher NSL92371 locus PRC1149 genomic sequence Length = 642 Score = 99.6 bits (50), Expect = 6e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 120 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 179 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 332 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 273 Query: 180 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 221 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 272 tagtactcgaggtagtccccgaacctgtagggtccggggtac 231 Score = 46.1 bits (23), Expect = 0.079 Identities = 98/123 (79%) Strand = Plus / Minus Query: 239 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 298 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggctacggacaggcggcg 136 Query: 299 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 358 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 359 ctc 361 ||| Sbjct: 75 ctc 73
>gb|DQ428542.1| Sorghum bicolor voucher NSL87902 locus PRC1149 genomic sequence Length = 642 Score = 99.6 bits (50), Expect = 6e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 120 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 179 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 332 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 273 Query: 180 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 221 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 272 tagtactcgaggtagtccccgaacctgtagggtccggggtac 231 Score = 46.1 bits (23), Expect = 0.079 Identities = 98/123 (79%) Strand = Plus / Minus Query: 239 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 298 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggctacggacaggcggcg 136 Query: 299 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 358 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 359 ctc 361 ||| Sbjct: 75 ctc 73
>gb|DQ428541.1| Sorghum bicolor voucher NSL77217 locus PRC1149 genomic sequence Length = 635 Score = 99.6 bits (50), Expect = 6e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 120 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 179 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 180 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 221 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.079 Identities = 98/123 (79%) Strand = Plus / Minus Query: 239 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 298 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggctacggacaggcggcg 136 Query: 299 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 358 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 359 ctc 361 ||| Sbjct: 75 ctc 73
>gb|DQ428540.1| Sorghum bicolor voucher NSL77034 locus PRC1149 genomic sequence Length = 635 Score = 99.6 bits (50), Expect = 6e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 120 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 179 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 180 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 221 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.079 Identities = 98/123 (79%) Strand = Plus / Minus Query: 239 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 298 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggctacggacaggcggcg 136 Query: 299 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 358 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 359 ctc 361 ||| Sbjct: 75 ctc 73
>gb|DQ428539.1| Sorghum bicolor voucher NSL56174 locus PRC1149 genomic sequence Length = 635 Score = 99.6 bits (50), Expect = 6e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 120 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 179 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 180 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 221 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.079 Identities = 98/123 (79%) Strand = Plus / Minus Query: 239 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 298 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggctacggacaggcggcg 136 Query: 299 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 358 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 359 ctc 361 ||| Sbjct: 75 ctc 73
>gb|DQ428538.1| Sorghum bicolor voucher NSL56003 locus PRC1149 genomic sequence Length = 635 Score = 99.6 bits (50), Expect = 6e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 120 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 179 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 180 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 221 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.079 Identities = 98/123 (79%) Strand = Plus / Minus Query: 239 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 298 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggctacggacaggcggcg 136 Query: 299 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 358 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 359 ctc 361 ||| Sbjct: 75 ctc 73
>gb|DQ428537.1| Sorghum bicolor voucher NSL55243 locus PRC1149 genomic sequence Length = 635 Score = 99.6 bits (50), Expect = 6e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 120 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 179 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 180 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 221 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.079 Identities = 98/123 (79%) Strand = Plus / Minus Query: 239 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 298 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggctacggacaggcggcg 136 Query: 299 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 358 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 359 ctc 361 ||| Sbjct: 75 ctc 73
>gb|DQ428536.1| Sorghum bicolor voucher NSL51365 locus PRC1149 genomic sequence Length = 640 Score = 99.6 bits (50), Expect = 6e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 120 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 179 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 180 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 221 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.079 Identities = 98/123 (79%) Strand = Plus / Minus Query: 239 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 298 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggcgacggacaggcggcg 136 Query: 299 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 358 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 359 ctc 361 ||| Sbjct: 75 ctc 73
>gb|DQ428535.1| Sorghum bicolor voucher NSL51030 locus PRC1149 genomic sequence Length = 635 Score = 99.6 bits (50), Expect = 6e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 120 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 179 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 180 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 221 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.079 Identities = 98/123 (79%) Strand = Plus / Minus Query: 239 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 298 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggcgacggacaggcggcg 136 Query: 299 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 358 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 359 ctc 361 ||| Sbjct: 75 ctc 73
>gb|DQ428534.1| Sorghum bicolor voucher NSL50875 locus PRC1149 genomic sequence Length = 639 Score = 99.6 bits (50), Expect = 6e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 120 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 179 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 180 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 221 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.079 Identities = 98/123 (79%) Strand = Plus / Minus Query: 239 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 298 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggcgacggacaggcggcg 136 Query: 299 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 358 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 359 ctc 361 ||| Sbjct: 75 ctc 73
>gb|DQ428533.1| Sorghum bicolor voucher BTx623 locus PRC1149 genomic sequence Length = 635 Score = 99.6 bits (50), Expect = 6e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 120 ccgaacagctccttgacggcctgcaacctcgccgccttgtcggcaaacttggtgccctgg 179 |||| ||||| |||||||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 335 ccgagcagcttcttgacggcctggaacctggcgtccttgtcgccgaacttggtgccctgg 276 Query: 180 tagtagtccaggtagtcgccgaacctgtacggcccggggtac 221 ||||| || |||||||| ||||||||||| || ||||||||| Sbjct: 275 tagtactcgaggtagtccccgaacctgtagggtccggggtac 234 Score = 46.1 bits (23), Expect = 0.079 Identities = 98/123 (79%) Strand = Plus / Minus Query: 239 cgccggcgccacgacggcttccgccccggggttgtagaacgtcgccaccgacagccggcg 298 |||||||||||| ||||| || | || |||||||||||||| || || ||||| ||||| Sbjct: 195 cgccggcgccaccacggcgtcggggcctgggttgtagaacgtggctacggacaggcggcg 136 Query: 299 cccttccgcgacggcggcaacgcggtgcagcacgctcctgtaggcgccgccgctcatcac 358 || | | |||| || |||||||||| | ||||| ||||||||||||||| | ||| Sbjct: 135 gccctggtccccggccgcgacgcggtgcacgatgctccggtaggcgccgccgctgagcac 76 Query: 359 ctc 361 ||| Sbjct: 75 ctc 73
>gb|AC024772.1| Caenorhabditis elegans cosmid Y40C5A, complete sequence Length = 45870 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 20 gattttccgaaaaaagaaacaaatc 44 ||||||| ||||||||||||||||| Sbjct: 21876 gattttctgaaaaaagaaacaaatc 21852
>ref|NM_187384.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3825 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 acacctgcctcgccgtgggc 239 |||||||||||||||||||| Sbjct: 3766 acacctgcctcgccgtgggc 3747
>gb|AC111024.13| Mus musculus chromosome 17, clone RP23-103P1, complete sequence Length = 219128 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 agattttccgaaaaaagaaa 38 |||||||||||||||||||| Sbjct: 215087 agattttccgaaaaaagaaa 215068
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 241 ccggcgccacgacggcttccgccc 264 |||||||||||||||||| ||||| Sbjct: 2185950 ccggcgccacgacggcttacgccc 2185973
>emb|X90711.1|BPLPSBLOC Bordetella pertussis lipopolysaccharide biosynthesis locus baf gene, waaA, waaB & wlbA,B,C,D,E,F,G,H,I,J & L genes Length = 15389 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 230 cgccgtgggcgccggcgccacgacggcttccg 261 ||||| |||||||||||||||| ||| ||||| Sbjct: 5317 cgccgagggcgccggcgccacgccggtttccg 5348
>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16 Length = 343473 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 cgccgtgggcgccggcgcca 249 |||||||||||||||||||| Sbjct: 178967 cgccgtgggcgccggcgcca 178986
>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16 Length = 347356 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 230 cgccgtgggcgccggcgccacgacggcttccg 261 ||||| |||||||||||||||| ||| ||||| Sbjct: 164731 cgccgagggcgccggcgccacgccggtttccg 164700
>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14 Length = 348251 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 230 cgccgtgggcgccggcgccacgacggcttccg 261 ||||| |||||||||||||||| ||| ||||| Sbjct: 168179 cgccgagggcgccggcgccacgccggtttccg 168148
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12 Length = 346359 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 230 cgccgtgggcgccggcgccacgacggcttccg 261 ||||| |||||||||||||||| ||| ||||| Sbjct: 89243 cgccgagggcgccggcgccacgccggtttccg 89212
>emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003B01, complete sequence Length = 153643 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 tgcctcgccgtgggcgccggcgcc 248 ||||||||||||| |||||||||| Sbjct: 34247 tgcctcgccgtggtcgccggcgcc 34270
>emb|AJ007747.1|BBR007747 Bordetella bronchiseptica cosmid BbLPS1 Length = 41642 Score = 40.1 bits (20), Expect = 4.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 230 cgccgtgggcgccggcgccacgacggcttccg 261 ||||| |||||||||||||||| ||| ||||| Sbjct: 36248 cgccgagggcgccggcgccacgccggtttccg 36217
>gb|AC010007.4| Drosophila melanogaster 3L BAC RP98-17K17 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 175481 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 ttttccgaaaaaagaaacaa 41 |||||||||||||||||||| Sbjct: 94172 ttttccgaaaaaagaaacaa 94153
>gb|U42839.2| Caenorhabditis elegans cosmid F11C7, complete sequence Length = 39556 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 attttccgaaaaaagaaaca 40 |||||||||||||||||||| Sbjct: 1740 attttccgaaaaaagaaaca 1721
>gb|AF332532.1|AF332532 Eimeria peromysci 23S ribosomal RNA gene, partial sequence; apicoplast gene for apicoplast product Length = 1172 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 ccggggtacacctgcctcgc 232 |||||||||||||||||||| Sbjct: 1036 ccggggtacacctgcctcgc 1017
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 tccgcgacggcggcaacgcg 322 |||||||||||||||||||| Sbjct: 3766396 tccgcgacggcggcaacgcg 3766377
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 tgcctcgccgtgggcgccggcgcc 248 ||||||||||||| |||||||||| Sbjct: 32515513 tgcctcgccgtggtcgccggcgcc 32515536
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 acacctgcctcgccgtgggc 239 |||||||||||||||||||| Sbjct: 18634872 acacctgcctcgccgtgggc 18634891
>gb|AC154798.2| Mus musculus BAC clone RP24-495N16 from chromosome 17, complete sequence Length = 138195 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 agattttccgaaaaaagaaa 38 |||||||||||||||||||| Sbjct: 124950 agattttccgaaaaaagaaa 124969
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 ggcgcccttccgcgacggcg 314 |||||||||||||||||||| Sbjct: 3266002 ggcgcccttccgcgacggcg 3266021
>dbj|AP004006.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1197_D06 Length = 103844 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 acacctgcctcgccgtgggc 239 |||||||||||||||||||| Sbjct: 59926 acacctgcctcgccgtgggc 59945
>dbj|AP004259.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0005E02 Length = 89380 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 acacctgcctcgccgtgggc 239 |||||||||||||||||||| Sbjct: 87414 acacctgcctcgccgtgggc 87433
>dbj|AK070786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064M09, full insert sequence Length = 1258 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 225 tgcctcgccgtgggcgccggcgcc 248 ||||||||||||| |||||||||| Sbjct: 520 tgcctcgccgtggtcgccggcgcc 543
>gb|AF145724.1|AF145724 Streptomyces albus integrase homolog, putative regulatory protein (sitI), oxidoreductase homolog (sitS), and AraC-like transcriptional regulator homolog (sitR) genes, complete cds; and unknown gene Length = 6439 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 caacgcggtgcagcacgctc 335 |||||||||||||||||||| Sbjct: 3640 caacgcggtgcagcacgctc 3659
>emb|AL732334.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0323C08, complete sequence Length = 94903 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 gcctcgccgtgggcgccggcgcca 249 |||||||||| ||||||||||||| Sbjct: 26304 gcctcgccgtcggcgccggcgcca 26327
>gb|AE003471.3| Drosophila melanogaster chromosome 3L, section 5 of 83 of the complete sequence Length = 302131 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 ttttccgaaaaaagaaacaa 41 |||||||||||||||||||| Sbjct: 80914 ttttccgaaaaaagaaacaa 80895
>gb|AC005847.1|AC005847 Drosophila melanogaster DNA sequence (P1s DS03179 (D226), DS06357 (D230), DS03404 (D231), DS06962 (D232), and DS07291 (D240)), complete sequence Length = 268369 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 ttttccgaaaaaagaaacaa 41 |||||||||||||||||||| Sbjct: 131494 ttttccgaaaaaagaaacaa 131513
>dbj|AB231866.1| Branchiostoma floridae gene for zinc finger protein AmphiZic, complete cds Length = 155361 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 gcacactgcacacccagtca 100 |||||||||||||||||||| Sbjct: 104793 gcacactgcacacccagtca 104812 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,459,600 Number of Sequences: 3902068 Number of extensions: 2459600 Number of successful extensions: 57300 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56896 Number of HSP's gapped (non-prelim): 404 length of query: 365 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 343 effective length of database: 17,147,199,772 effective search space: 5881489521796 effective search space used: 5881489521796 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
