Clone Name | rbart57h04 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_472738.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1206 Score = 155 bits (78), Expect = 9e-35 Identities = 123/138 (89%) Strand = Plus / Minus Query: 127 accatgtcgtgcttgtacacctggccgggcctcacgatggacgacgggaagttggggtgg 186 ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct: 1187 accatctcgtgcttgtacacctgtccgggcctcacgatcaccgacgggaagttggggtgg 1128 Query: 187 ttgacggcgtcagggtaagcctgcgtctccagggacagcgcgccgtactggccgtacacc 246 || |||||||| ||| | |||||||||||||| |||||||||||||||| |||||| || Sbjct: 1127 ttcacggcgtcggggaacccctgcgtctccaggcacagcgcgccgtactgcccgtacgcc 1068 Query: 247 ttcccgggcttccccttc 264 |||||| |||||||||| Sbjct: 1067 ttcccgcccttccccttc 1050
>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21, complete sequence Length = 138969 Score = 155 bits (78), Expect = 9e-35 Identities = 123/138 (89%) Strand = Plus / Minus Query: 127 accatgtcgtgcttgtacacctggccgggcctcacgatggacgacgggaagttggggtgg 186 ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct: 81921 accatctcgtgcttgtacacctgtccgggcctcacgatcaccgacgggaagttggggtgg 81862 Query: 187 ttgacggcgtcagggtaagcctgcgtctccagggacagcgcgccgtactggccgtacacc 246 || |||||||| ||| | |||||||||||||| |||||||||||||||| |||||| || Sbjct: 81861 ttcacggcgtcggggaacccctgcgtctccaggcacagcgcgccgtactgcccgtacgcc 81802 Query: 247 ttcccgggcttccccttc 264 |||||| |||||||||| Sbjct: 81801 ttcccgcccttccccttc 81784 Score = 67.9 bits (34), Expect = 2e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 113 aggagaacctgaagaccatgtcgtgcttgtacacctggccgggcct 158 |||||||| ||||| ||||||||||| ||||||||||||||||||| Sbjct: 88854 aggagaacttgaaggccatgtcgtgcctgtacacctggccgggcct 88809
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 155 bits (78), Expect = 9e-35 Identities = 123/138 (89%) Strand = Plus / Minus Query: 127 accatgtcgtgcttgtacacctggccgggcctcacgatggacgacgggaagttggggtgg 186 ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct: 22873146 accatctcgtgcttgtacacctgtccgggcctcacgatcaccgacgggaagttggggtgg 22873087 Query: 187 ttgacggcgtcagggtaagcctgcgtctccagggacagcgcgccgtactggccgtacacc 246 || |||||||| ||| | |||||||||||||| |||||||||||||||| |||||| || Sbjct: 22873086 ttcacggcgtcggggaacccctgcgtctccaggcacagcgcgccgtactgcccgtacgcc 22873027 Query: 247 ttcccgggcttccccttc 264 |||||| |||||||||| Sbjct: 22873026 ttcccgcccttccccttc 22873009 Score = 67.9 bits (34), Expect = 2e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 113 aggagaacctgaagaccatgtcgtgcttgtacacctggccgggcct 158 |||||||| ||||| ||||||||||| ||||||||||||||||||| Sbjct: 22880079 aggagaacttgaaggccatgtcgtgcctgtacacctggccgggcct 22880034
>dbj|AK104444.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-H06, full insert sequence Length = 1285 Score = 155 bits (78), Expect = 9e-35 Identities = 123/138 (89%) Strand = Plus / Minus Query: 127 accatgtcgtgcttgtacacctggccgggcctcacgatggacgacgggaagttggggtgg 186 ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct: 1153 accatatcgtgcttgtacacctgtccgggcctcacgatcaccgacgggaagttggggtgg 1094 Query: 187 ttgacggcgtcagggtaagcctgcgtctccagggacagcgcgccgtactggccgtacacc 246 || |||||||| ||| | |||||||||||||| |||||||||||||||| |||||| || Sbjct: 1093 ttcacggcgtcggggaacccctgcgtctccaggcacagcgcgccgtactgcccgtacgcc 1034 Query: 247 ttcccgggcttccccttc 264 |||||| |||||||||| Sbjct: 1033 ttcccgcccttccccttc 1016
>dbj|AK059553.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G05, full insert sequence Length = 1329 Score = 155 bits (78), Expect = 9e-35 Identities = 123/138 (89%) Strand = Plus / Minus Query: 127 accatgtcgtgcttgtacacctggccgggcctcacgatggacgacgggaagttggggtgg 186 ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| Sbjct: 1177 accatctcgtgcttgtacacctgtccgggcctcacgatcaccgacgggaagttggggtgg 1118 Query: 187 ttgacggcgtcagggtaagcctgcgtctccagggacagcgcgccgtactggccgtacacc 246 || |||||||| ||| | |||||||||||||| |||||||||||||||| |||||| || Sbjct: 1117 ttcacggcgtcggggaacccctgcgtctccaggcacagcgcgccgtactgcccgtacgcc 1058 Query: 247 ttcccgggcttccccttc 264 |||||| |||||||||| Sbjct: 1057 ttcccgcccttccccttc 1040
>gb|AY108337.1| Zea mays PCO116943 mRNA sequence Length = 500 Score = 117 bits (59), Expect = 2e-23 Identities = 128/151 (84%) Strand = Plus / Minus Query: 113 aggagaacctgaagaccatgtcgtgcttgtacacctggccgggcctcacgatggacgacg 172 |||||||| |||| ||||||||||||||||||||||| || ||||| ||||| || | Sbjct: 322 aggagaacttgaacaccatgtcgtgcttgtacacctgccccggcctgacgatctgggagg 263 Query: 173 ggaagttggggtggttgacggcgtcagggtaagcctgcgtctccagggacagcgcgccgt 232 |||| |||||||||||||||||||| ||| | |||||||||| ||| |||||||||||| Sbjct: 262 ggaaattggggtggttgacggcgtccgggaacccctgcgtctcgaggcacagcgcgccgt 203 Query: 233 actggccgtacaccttcccgggcttcccctt 263 |||| ||||||||| ||| ||||||||| Sbjct: 202 actgctggtacaccttgccgcccttcccctt 172
>ref|XM_466392.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1299 Score = 95.6 bits (48), Expect = 7e-17 Identities = 114/136 (83%) Strand = Plus / Minus Query: 117 gaacctgaagaccatgtcgtgcttgtacacctggccgggcctcacgatggacgacgggaa 176 |||| |||| ||||||| ||||| ||||||||| || |||| ||||| ||||||||| Sbjct: 1160 gaacttgaacaccatgttgtgctcgtacacctgccccggccggacgatctgcgacgggaa 1101 Query: 177 gttggggtggttgacggcgtcagggtaagcctgcgtctccagggacagcgcgccgtactg 236 | | |||||||| |||||||| ||| | |||||||||||| | |||||||||||||| | Sbjct: 1100 gctcgggtggttcacggcgtcggggaacccctgcgtctccaagcacagcgcgccgtaccg 1041 Query: 237 gccgtacaccttcccg 252 |||||||||| ||||| Sbjct: 1040 gccgtacaccctcccg 1025
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 95.6 bits (48), Expect = 7e-17 Identities = 114/136 (83%) Strand = Plus / Minus Query: 117 gaacctgaagaccatgtcgtgcttgtacacctggccgggcctcacgatggacgacgggaa 176 |||| |||| ||||||| ||||| ||||||||| || |||| ||||| ||||||||| Sbjct: 22124256 gaacttgaacaccatgttgtgctcgtacacctgccccggccggacgatctgcgacgggaa 22124197 Query: 177 gttggggtggttgacggcgtcagggtaagcctgcgtctccagggacagcgcgccgtactg 236 | | |||||||| |||||||| ||| | |||||||||||| | |||||||||||||| | Sbjct: 22124196 gctcgggtggttcacggcgtcggggaacccctgcgtctccaagcacagcgcgccgtaccg 22124137 Query: 237 gccgtacaccttcccg 252 |||||||||| ||||| Sbjct: 22124136 gccgtacaccctcccg 22124121
>dbj|AP005116.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0703B01 Length = 137445 Score = 95.6 bits (48), Expect = 7e-17 Identities = 114/136 (83%) Strand = Plus / Minus Query: 117 gaacctgaagaccatgtcgtgcttgtacacctggccgggcctcacgatggacgacgggaa 176 |||| |||| ||||||| ||||| ||||||||| || |||| ||||| ||||||||| Sbjct: 98155 gaacttgaacaccatgttgtgctcgtacacctgccccggccggacgatctgcgacgggaa 98096 Query: 177 gttggggtggttgacggcgtcagggtaagcctgcgtctccagggacagcgcgccgtactg 236 | | |||||||| |||||||| ||| | |||||||||||| | |||||||||||||| | Sbjct: 98095 gctcgggtggttcacggcgtcggggaacccctgcgtctccaagcacagcgcgccgtaccg 98036 Query: 237 gccgtacaccttcccg 252 |||||||||| ||||| Sbjct: 98035 gccgtacaccctcccg 98020
>dbj|AP006070.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1342F01 Length = 153287 Score = 95.6 bits (48), Expect = 7e-17 Identities = 114/136 (83%) Strand = Plus / Minus Query: 117 gaacctgaagaccatgtcgtgcttgtacacctggccgggcctcacgatggacgacgggaa 176 |||| |||| ||||||| ||||| ||||||||| || |||| ||||| ||||||||| Sbjct: 20100 gaacttgaacaccatgttgtgctcgtacacctgccccggccggacgatctgcgacgggaa 20041 Query: 177 gttggggtggttgacggcgtcagggtaagcctgcgtctccagggacagcgcgccgtactg 236 | | |||||||| |||||||| ||| | |||||||||||| | |||||||||||||| | Sbjct: 20040 gctcgggtggttcacggcgtcggggaacccctgcgtctccaagcacagcgcgccgtaccg 19981 Query: 237 gccgtacaccttcccg 252 |||||||||| ||||| Sbjct: 19980 gccgtacaccctcccg 19965
>dbj|AK109600.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-E04, full insert sequence Length = 1324 Score = 95.6 bits (48), Expect = 7e-17 Identities = 114/136 (83%) Strand = Plus / Minus Query: 117 gaacctgaagaccatgtcgtgcttgtacacctggccgggcctcacgatggacgacgggaa 176 |||| |||| ||||||| ||||| ||||||||| || |||| ||||| ||||||||| Sbjct: 1160 gaacttgaacaccatgttgtgctcgtacacctgccccggccggacgatctgcgacgggaa 1101 Query: 177 gttggggtggttgacggcgtcagggtaagcctgcgtctccagggacagcgcgccgtactg 236 | | |||||||| |||||||| ||| | |||||||||||| | |||||||||||||| | Sbjct: 1100 gctcgggtggttcacggcgtcggggaacccctgcgtctccaagcacagcgcgccgtaccg 1041 Query: 237 gccgtacaccttcccg 252 |||||||||| ||||| Sbjct: 1040 gccgtacaccctcccg 1025
>ref|XM_472739.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1092 Score = 67.9 bits (34), Expect = 2e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 113 aggagaacctgaagaccatgtcgtgcttgtacacctggccgggcct 158 |||||||| ||||| ||||||||||| ||||||||||||||||||| Sbjct: 1087 aggagaacttgaaggccatgtcgtgcctgtacacctggccgggcct 1042
>gb|BT016428.1| Zea mays clone Contig261 mRNA sequence Length = 1373 Score = 67.9 bits (34), Expect = 2e-08 Identities = 100/122 (81%) Strand = Plus / Minus Query: 113 aggagaacctgaagaccatgtcgtgcttgtacacctggccgggcctcacgatggacgacg 172 |||||||| | |||| |||||| || | ||||||| ||| ||||||||||| ||||| Sbjct: 1113 aggagaacttaaagagcatgtcatggctatacaccttgcccggcctcacgatctgcgacg 1054 Query: 173 ggaagttggggtggttgacggcgtcagggtaagcctgcgtctccagggacagcgcgccgt 232 ||||| | |||||||||||||| || ||| | |||||||||| ||| |||||||| ||| Sbjct: 1053 ggaagctcgggtggttgacggcatcggggaacccctgcgtctcgaggcacagcgcggcgt 994 Query: 233 ac 234 || Sbjct: 993 ac 992
>dbj|AK106058.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F10, full insert sequence Length = 1343 Score = 67.9 bits (34), Expect = 2e-08 Identities = 43/46 (93%) Strand = Plus / Minus Query: 113 aggagaacctgaagaccatgtcgtgcttgtacacctggccgggcct 158 |||||||| ||||| ||||||||||| ||||||||||||||||||| Sbjct: 1147 aggagaacttgaaggccatgtcgtgcctgtacacctggccgggcct 1102
>gb|AY108564.1| Zea mays PCO119136 mRNA sequence Length = 594 Score = 54.0 bits (27), Expect = 2e-04 Identities = 84/103 (81%) Strand = Plus / Minus Query: 113 aggagaacctgaagaccatgtcgtgcttgtacacctggccgggcctcacgatggacgacg 172 |||||||| | |||| |||||| || | ||||||| ||| ||||||||||| ||||| Sbjct: 349 aggagaacttaaagagcatgtcatggctatacaccttgcccggcctcacgatctgcgacg 290 Query: 173 ggaagttggggtggttgacggcgtcagggtaagcctgcgtctc 215 ||||| | |||||||||||||| || ||| | |||||||||| Sbjct: 289 ggaagctcgggtggttgacggcatcggggaacccctgcgtctc 247
>ref|XM_562126.1| Anopheles gambiae str. PEST ENSANGP00000028444 (ENSANGG00000010528), partial mRNA Length = 1080 Score = 44.1 bits (22), Expect = 0.23 Identities = 31/34 (91%) Strand = Plus / Minus Query: 168 cgacgggaagttggggtggttgacggcgtcaggg 201 ||||||||||||||| ||||||| ||||||||| Sbjct: 1017 cgacgggaagttgggctggttgattgcgtcaggg 984
>ref|XM_313661.2| Anopheles gambiae str. PEST ENSANGP00000013017 (ENSANGG00000010528), mRNA Length = 1237 Score = 44.1 bits (22), Expect = 0.23 Identities = 31/34 (91%) Strand = Plus / Minus Query: 168 cgacgggaagttggggtggttgacggcgtcaggg 201 ||||||||||||||| ||||||| ||||||||| Sbjct: 1152 cgacgggaagttgggctggttgattgcgtcaggg 1119
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 226 gcgccgtactggccgtacacc 246 ||||||||||||||||||||| Sbjct: 1236910 gcgccgtactggccgtacacc 1236890
>dbj|AK089417.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F730024L10 product:unclassifiable, full insert sequence Length = 3362 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 114 ggagaacctgaagaccatgtc 134 ||||||||||||||||||||| Sbjct: 1584 ggagaacctgaagaccatgtc 1604
>emb|AL732615.15| Mouse DNA sequence from clone RP23-190O8 on chromosome 4, complete sequence Length = 189819 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 114 ggagaacctgaagaccatgtc 134 ||||||||||||||||||||| Sbjct: 169354 ggagaacctgaagaccatgtc 169334
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 3.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 162 gatggacgacgggaagttggggtggttg 189 ||||| ||| |||||||||||||||||| Sbjct: 1503128 gatggtcgaagggaagttggggtggttg 1503101
>gb|AC092139.5| Homo sapiens chromosome 16 clone RP11-391L3, complete sequence Length = 191731 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 17 ttattacacaagctaccaacatgt 40 |||||| ||||||||||||||||| Sbjct: 102883 ttattatacaagctaccaacatgt 102906
>gb|AC092351.3| Homo sapiens chromosome 16 clone RP11-2L4, complete sequence Length = 158216 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 gtctccagggacagcgcgcc 230 |||||||||||||||||||| Sbjct: 105330 gtctccagggacagcgcgcc 105349
>dbj|AP001791.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-427G12, complete sequence Length = 140000 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 cacaagctaccaacatgtta 42 |||||||||||||||||||| Sbjct: 78195 cacaagctaccaacatgtta 78176 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,507,219 Number of Sequences: 3902068 Number of extensions: 1507219 Number of successful extensions: 62725 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62653 Number of HSP's gapped (non-prelim): 71 length of query: 280 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 258 effective length of database: 17,147,199,772 effective search space: 4423977541176 effective search space used: 4423977541176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)