ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart57g10 |
|---|---|
| Clone Library Name | barley_pub |
>GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC 2.5.1.18)| (Protein bronze-2) Length = 236 Score = 33.1 bits (74), Expect = 0.31 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -1 Query: 437 PKLAAWADRFCAHPAVAGAMPGVERFVEYS 348 P L W+ RF AHPA +P E+ V+++ Sbjct: 193 PLLDGWSQRFAAHPAAKRVLPDTEKVVQFT 222
>ACCA_NEIMB (Q9JRV8) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 319 Score = 30.0 bits (66), Expect = 2.7 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 10/58 (17%) Frame = +3 Query: 222 GVYTNS-QQATYSCYAIEHC---------QVSTTVRSLGISTSRLQNAVILDAVLHEP 365 G Y N Q +TYS + E C + + ++LGI+ RLQ ++D V+ EP Sbjct: 211 GDYVNMLQYSTYSVISPEGCASILWKTAEKAADAAQALGITADRLQKLDLVDTVIKEP 268
>ACCA_NEIMA (Q9JUF0) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 319 Score = 30.0 bits (66), Expect = 2.7 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 10/58 (17%) Frame = +3 Query: 222 GVYTNS-QQATYSCYAIEHC---------QVSTTVRSLGISTSRLQNAVILDAVLHEP 365 G Y N Q +TYS + E C + + ++LGI+ RLQ ++D V+ EP Sbjct: 211 GDYVNMLQYSTYSVISPEGCASILWKTAEKAADAAQALGITADRLQKLDLVDTVIKEP 268
>ACCA_NEIG1 (Q5F8F5) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 319 Score = 30.0 bits (66), Expect = 2.7 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 10/58 (17%) Frame = +3 Query: 222 GVYTNS-QQATYSCYAIEHC---------QVSTTVRSLGISTSRLQNAVILDAVLHEP 365 G Y N Q +TYS + E C + + ++LGI+ RLQ ++D V+ EP Sbjct: 211 GDYVNMLQYSTYSVISPEGCASILWKTAEKAADAAQALGITADRLQKLDLVDTVIKEP 268
>NU5C_MALAR (Q9MVL6) NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain 5) (NADH-plastoquinone oxidoreductase chain 5) (Fragment) Length = 707 Score = 30.0 bits (66), Expect = 2.7 Identities = 19/45 (42%), Positives = 25/45 (55%) Frame = +3 Query: 135 VIFFIFLITVLRGALLPLHQELVFFIKKGGVYTNSQQATYSCYAI 269 +I I +ITVL GA LPL Q+ IK+G Y+ Q Y A+ Sbjct: 293 LISLIGIITVLLGATLPLAQK---XIKRGLAYSTMSQLGYMMLAL 334
>ACCA_HAEI8 (Q4QND7) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 315 Score = 30.0 bits (66), Expect = 2.7 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 9/51 (17%) Frame = +3 Query: 240 QQATYSCYAIEHC---------QVSTTVRSLGISTSRLQNAVILDAVLHEP 365 Q +TYS + E C + ST +G++ SRL+ ++D+++ EP Sbjct: 217 QYSTYSVISPEGCASILWKSAEKASTAAEVMGLTASRLKELNLIDSIMQEP 267
>CSF1_MOUSE (P07141) Macrophage colony-stimulating factor 1 precursor (CSF-1)| (MCSF) Length = 552 Score = 29.6 bits (65), Expect = 3.5 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -1 Query: 401 HPAVAGAMPGVERFVEYSVKNDGVLKAASANS 306 HP+ G +PGVE +E S+ + VL+ AS + Sbjct: 280 HPSAGGPVPGVEDILESSLGTNWVLEEASGEA 311
>ACCA_AZOSE (Q5P2J0) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 322 Score = 29.6 bits (65), Expect = 3.5 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 9/51 (17%) Frame = +3 Query: 240 QQATYSCYAIEHC---------QVSTTVRSLGISTSRLQNAVILDAVLHEP 365 Q ATYS + E C + S ++GI+ +RL++ ++D V++EP Sbjct: 218 QYATYSVISPEGCASILWKSAEKASEAAETMGITAARLKSLGLIDRVVNEP 268
>ACCA_HAEIN (P43872) Acetyl-coenzyme A carboxylase carboxyl transferase subunit| alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase carboxyltransferase subunit alpha) (ACCase subunit alpha) Length = 315 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 9/51 (17%) Frame = +3 Query: 240 QQATYSCYAIEHC---------QVSTTVRSLGISTSRLQNAVILDAVLHEP 365 Q +TYS + E C + ST +G++ SRL+ ++D+++ EP Sbjct: 217 QYSTYSVISPEGCASILWKSAEKASTAAEVMGLTASRLKELNLIDSIVQEP 267
>SCE3_YEAST (P03877) Intron-encoded DNA endonuclease aI3 precursor (DNA| endonuclease I-SceIII) [Contains: Truncated, nonfunctional cytochrome oxidase 1; DNA endonuclease aI3 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceIII)] Length = 403 Score = 29.6 bits (65), Expect = 3.5 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -1 Query: 77 LQLRNYLCNSRNCSKVHKLI 18 L+L NYLCN C KV+K I Sbjct: 137 LELANYLCNLTKCGKVYKKI 156
>ASSY_RHILO (Q98E81) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 407 Score = 29.3 bits (64), Expect = 4.5 Identities = 10/28 (35%), Positives = 19/28 (67%) Frame = +2 Query: 203 FLHKKRRGLHQQPAGYLFLLRHRALSSV 286 F+ K RG+++ P G + ++ HRA+ S+ Sbjct: 270 FVGMKSRGVYETPGGAILIVAHRAIESI 297
>ASSY_AGRT5 (Q8UC31) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 407 Score = 29.3 bits (64), Expect = 4.5 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +2 Query: 203 FLHKKRRGLHQQPAGYLFLLRHRALSSV 286 F+ K RG+++ P G + L HRA+ S+ Sbjct: 270 FVGMKSRGVYETPGGTILLAAHRAIESI 297
>ASSY_RHIME (Q92L73) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 405 Score = 29.3 bits (64), Expect = 4.5 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +2 Query: 203 FLHKKRRGLHQQPAGYLFLLRHRALSSV 286 F+ K RG+++ P G + L HRA+ S+ Sbjct: 270 FVGMKSRGVYETPGGTILLAAHRAIESI 297
>ASSY_BRUSU (Q8G376) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 406 Score = 29.3 bits (64), Expect = 4.5 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +2 Query: 203 FLHKKRRGLHQQPAGYLFLLRHRALSSV 286 F+ K RG+++ P G + L HRA+ S+ Sbjct: 270 FVGMKSRGVYETPGGTILLAAHRAIESI 297
>ASSY_BRUME (Q8YEK8) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 406 Score = 29.3 bits (64), Expect = 4.5 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = +2 Query: 203 FLHKKRRGLHQQPAGYLFLLRHRALSSV 286 F+ K RG+++ P G + L HRA+ S+ Sbjct: 270 FVGMKSRGVYETPGGTILLAAHRAIESI 297
>ANR50_HUMAN (Q9ULJ7) Ankyrin repeat domain-containing protein 50| Length = 1375 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 3/63 (4%) Frame = +3 Query: 126 APLVIFFIFLITVLRGAL---LPLHQELVFFIKKGGVYTNSQQATYSCYAIEHCQVSTTV 296 A L ++ I+ T +R +L +P QE++ + K G + NS+ SC + + ++ Sbjct: 415 AELALWMIWNGTPVRDSLSTLIPKEQEVLQLLVKAGAHVNSEDDRTSCIVRQALEREDSI 474 Query: 297 RSL 305 R+L Sbjct: 475 RTL 477 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,725,049 Number of Sequences: 219361 Number of extensions: 972541 Number of successful extensions: 2595 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2572 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2595 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
