>gb|AC169376.2| Sorghum bicolor clone SB_BBc0046M17, complete sequence
          Length = 127914

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                            
Query: 265   gcctggatggacgtgggctggatgacggcgtccagctcggccctcat 311
             ||||||||||||||||||||||||| || |||||| |||| ||||||
Sbjct: 12379 gcctggatggacgtgggctggatgatggagtccaggtcggacctcat 12333

>ref|XM_469419.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1219

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 362 cgccgccccaaatctccgggatggctc 388
           |||||||||||||||||||||||||||
Sbjct: 808 cgccgccccaaatctccgggatggctc 782

>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16
             map S2606, complete sequence
          Length = 124140

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                        
Query: 362   cgccgccccaaatctccgggatggctc 388
             |||||||||||||||||||||||||||
Sbjct: 98685 cgccgccccaaatctccgggatggctc 98659

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                           
Query: 362      cgccgccccaaatctccgggatggctc 388
                |||||||||||||||||||||||||||
Sbjct: 27854555 cgccgccccaaatctccgggatggctc 27854529

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                           
Query: 362      cgccgccccaaatctccgggatggctc 388
                |||||||||||||||||||||||||||
Sbjct: 27945879 cgccgccccaaatctccgggatggctc 27945853

>dbj|AK099563.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034L20, full
           insert sequence
          Length = 1147

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 362 cgccgccccaaatctccgggatggctc 388
           |||||||||||||||||||||||||||
Sbjct: 807 cgccgccccaaatctccgggatggctc 781

>dbj|AK061982.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-A11, full
           insert sequence
          Length = 1144

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 362 cgccgccccaaatctccgggatggctc 388
           |||||||||||||||||||||||||||
Sbjct: 808 cgccgccccaaatctccgggatggctc 782

>dbj|AK061528.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-D11, full
           insert sequence
          Length = 1112

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 362 cgccgccccaaatctccgggatggctc 388
           |||||||||||||||||||||||||||
Sbjct: 791 cgccgccccaaatctccgggatggctc 765

>gb|AE004656.1| Pseudomonas aeruginosa PAO1, section 217 of 529 of the complete genome
          Length = 13104

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 347   gctcgccgtcggccgcgccgcc 368
             ||||||||||||||||||||||
Sbjct: 12539 gctcgccgtcggccgcgccgcc 12560

>emb|X82617.1|ZMSSIP Z.mays mRNA for sugar-starvation induced protein
          Length = 1022

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 268 tggatggacgtgggctggatga 289
           ||||||||||||||||||||||
Sbjct: 683 tggatggacgtgggctggatga 662

>gb|AY108507.1| Zea mays PCO092437 mRNA sequence
          Length = 1277

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 268 tggatggacgtgggctggatga 289
           ||||||||||||||||||||||
Sbjct: 922 tggatggacgtgggctggatga 901

>gb|AE008843.1| Salmonella typhimurium LT2, section 147 of 220 of the complete genome
          Length = 20335

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 358  gccgcgccgccccaaatctcc 378
            |||||||||||||||||||||
Sbjct: 4318 gccgcgccgccccaaatctcc 4338

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 344      gcagctcgccgtcggccgcgccgcc 368
                ||||||||||||||||| |||||||
Sbjct: 26211498 gcagctcgccgtcggcctcgccgcc 26211474

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 346    agctcgccgtcggccgcgccgcccc 370
              ||||||||||| |||||||||||||
Sbjct: 552741 agctcgccgtccgccgcgccgcccc 552717

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 336    gtcgggctgcagctcgccgtcggcc 360
              ||||||| |||||||||||||||||
Sbjct: 170714 gtcgggcagcagctcgccgtcggcc 170738

>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 358     gccgcgccgccccaaatctcc 378
               |||||||||||||||||||||
Sbjct: 3232395 gccgcgccgccccaaatctcc 3232415

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 344      gcagctcgccgtcggccgcgccgcc 368
                ||||||||||||||||| |||||||
Sbjct: 26139674 gcagctcgccgtcggcctcgccgcc 26139650

>emb|BX000457.2|CNS08CDE Oryza sativa chromosome 12, . BAC OJ1388_B05 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 144241

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 344    gcagctcgccgtcggccgcgccgcc 368
              ||||||||||||||||| |||||||
Sbjct: 101736 gcagctcgccgtcggcctcgccgcc 101712

>emb|AL160391.13| Human DNA sequence from clone RP11-121J6 on chromosome 13, complete
              sequence
          Length = 166757

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     catgccttttattctgtctg 79
              ||||||||||||||||||||
Sbjct: 156186 catgccttttattctgtctg 156167

>gb|AC115910.6| Mus musculus, clone RP24-480O17, complete sequence
          Length = 257036

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 128   cataattaagcatcaggact 147
             ||||||||||||||||||||
Sbjct: 85058 cataattaagcatcaggact 85077

>gb|AC100847.2| Homo sapiens chromosome 18, clone RP11-706P11, complete sequence
          Length = 186784

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   aatcagattgatcacaacat 168
             ||||||||||||||||||||
Sbjct: 75822 aatcagattgatcacaacat 75803

>emb|AL049696.9|HSJ279A18 Human DNA sequence from clone RP1-279A18 on chromosome 6q13-15 Contains
              the 3' part of the BCKDHB gene for branched chain keto acid
              dehydrogenase E1, beta polypeptide (maple syrup urine
              disease), complete sequence
          Length = 142707

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    caatcagattgatcacaaca 167
              ||||||||||||||||||||
Sbjct: 107288 caatcagattgatcacaaca 107307

>emb|BX842650.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 5/11
          Length = 349723

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   tcaatcagattgatcacaac 166
             ||||||||||||||||||||
Sbjct: 34506 tcaatcagattgatcacaac 34525

>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29
          Length = 303550

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 288    gacggcgtccagctcggccc 307
              ||||||||||||||||||||
Sbjct: 184961 gacggcgtccagctcggccc 184942

>gb|DQ099911.1| Lactobacillus plantarum cryptic plasmid pLJ42, complete sequence
          Length = 5529

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 18   ttgcttaatttgctttgcaa 37
            ||||||||||||||||||||
Sbjct: 4576 ttgcttaatttgctttgcaa 4557

>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 350     cgccgtcggccgcgccgccc 369
               ||||||||||||||||||||
Sbjct: 1744396 cgccgtcggccgcgccgccc 1744415

>gb|AE005780.1| Caulobacter crescentus CB15 section 106 of 359 of the complete genome
          Length = 14131

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 349   tcgccgtcggccgcgccgcc 368
             ||||||||||||||||||||
Sbjct: 13352 tcgccgtcggccgcgccgcc 13371

>gb|AC156637.2| Mus musculus BAC clone RP24-241I18 from chromosome 12, complete sequence
          Length = 156014

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 128    cataattaagcatcaggact 147
              ||||||||||||||||||||
Sbjct: 115193 cataattaagcatcaggact 115212

>dbj|AK043962.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length
           enriched library, clone:A830060H14
           product:unclassifiable, full insert sequence
          Length = 1586

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 128 cataattaagcatcaggact 147
           ||||||||||||||||||||
Sbjct: 681 cataattaagcatcaggact 662

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 347     gctcgccgtcggccgcgccgcccc 370
               |||||||||||||| |||||||||
Sbjct: 3951642 gctcgccgtcggccccgccgcccc 3951665

>gb|AE005097.1| Halobacterium sp. NRC-1 section 128 of 170 of the complete genome
          Length = 16069

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 347  gctcgccgtcggccgcgccg 366
            ||||||||||||||||||||
Sbjct: 2522 gctcgccgtcggccgcgccg 2541

>dbj|AP005271.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-752I5, complete
             sequence
          Length = 200108

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    tgccttttattctgtctgtc 81
             ||||||||||||||||||||
Sbjct: 65805 tgccttttattctgtctgtc 65824

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 350    cgccgtcggccgcgccgccc 369
              ||||||||||||||||||||
Sbjct: 612410 cgccgtcggccgcgccgccc 612429

>emb|AJ250235.1|HSA250235 Homo sapiens FECH gene for ferrochelatase, exons 1-11
          Length = 38637

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   aatcagattgatcacaacat 168
             ||||||||||||||||||||
Sbjct: 34515 aatcagattgatcacaacat 34496


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,959,102
Number of Sequences: 3902068
Number of extensions: 2959102
Number of successful extensions: 57637
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56974
Number of HSP's gapped (non-prelim): 663
length of query: 388
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 366
effective length of database: 17,147,199,772
effective search space: 6275875116552
effective search space used: 6275875116552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)