>ref|XM_470487.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 801

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 98/115 (85%)
 Strand = Plus / Minus

                                                                       
Query: 127 agagcgtggatatgtatgcgtcggcgagcatcttgccgagccggacctgcgcctgggtgg 186
           |||||||||||| ||| || | ||| ||||  |||||||||  |||||||||| ||||||
Sbjct: 799 agagcgtggataggtaggccttggctagcaatttgccgagcttgacctgcgccggggtgg 740

                                                                  
Query: 187 tgaggtgagtgatgtcgttggcgatgggcagccccatggcgtccacgtacttgag 241
           ||||||| |||  ||||||||||||||| || ||| ||||||| |||||||||||
Sbjct: 739 tgaggtgcgtgtagtcgttggcgatggggaggcccttggcgtcgacgtacttgag 685

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 98/115 (85%)
 Strand = Plus / Minus

                                                                            
Query: 127      agagcgtggatatgtatgcgtcggcgagcatcttgccgagccggacctgcgcctgggtgg 186
                |||||||||||| ||| || | ||| ||||  |||||||||  |||||||||| ||||||
Sbjct: 35886321 agagcgtggataggtaggccttggctagcaatttgccgagcttgacctgcgccggggtgg 35886262

                                                                       
Query: 187      tgaggtgagtgatgtcgttggcgatgggcagccccatggcgtccacgtacttgag 241
                ||||||| |||  ||||||||||||||| || ||| ||||||| |||||||||||
Sbjct: 35886261 tgaggtgcgtgtagtcgttggcgatggggaggcccttggcgtcgacgtacttgag 35886207



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                            
Query: 181      gggtggtgaggtgagtgatgtcgttggcgatgggcagccccatggcgtccacgtacttga 240
                ||||||||||||| |||  ||| || || ||||| || ||| |||| |||||||||||||
Sbjct: 25059216 gggtggtgaggtgcgtgtagtcattagccatggggaggcccttggcatccacgtacttga 25059157

                 
Query: 241      g 241
                |
Sbjct: 25059156 g 25059156

>gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genomic sequence, complete
             sequence
          Length = 145115

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 98/115 (85%)
 Strand = Plus / Plus

                                                                         
Query: 127   agagcgtggatatgtatgcgtcggcgagcatcttgccgagccggacctgcgcctgggtgg 186
             |||||||||||| ||| || | ||| ||||  |||||||||  |||||||||| ||||||
Sbjct: 74804 agagcgtggataggtaggccttggctagcaatttgccgagcttgacctgcgccggggtgg 74863

                                                                    
Query: 187   tgaggtgagtgatgtcgttggcgatgggcagccccatggcgtccacgtacttgag 241
             ||||||| |||  ||||||||||||||| || ||| ||||||| |||||||||||
Sbjct: 74864 tgaggtgcgtgtagtcgttggcgatggggaggcccttggcgtcgacgtacttgag 74918

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 98/115 (85%)
 Strand = Plus / Minus

                                                                            
Query: 127      agagcgtggatatgtatgcgtcggcgagcatcttgccgagccggacctgcgcctgggtgg 186
                |||||||||||| ||| || | ||| ||||  |||||||||  |||||||||| ||||||
Sbjct: 35976451 agagcgtggataggtaggccttggctagcaatttgccgagcttgacctgcgccggggtgg 35976392

                                                                       
Query: 187      tgaggtgagtgatgtcgttggcgatgggcagccccatggcgtccacgtacttgag 241
                ||||||| |||  ||||||||||||||| || ||| ||||||| |||||||||||
Sbjct: 35976391 tgaggtgcgtgtagtcgttggcgatggggaggcccttggcgtcgacgtacttgag 35976337



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                            
Query: 181      gggtggtgaggtgagtgatgtcgttggcgatgggcagccccatggcgtccacgtacttga 240
                ||||||||||||| |||  ||| || || ||||| || ||| |||| |||||||||||||
Sbjct: 25150525 gggtggtgaggtgcgtgtagtcattagccatggggaggcccttggcatccacgtacttga 25150466

                 
Query: 241      g 241
                |
Sbjct: 25150465 g 25150465

>dbj|AK100733.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023117O12, full
           insert sequence
          Length = 1119

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 98/115 (85%)
 Strand = Plus / Minus

                                                                       
Query: 127 agagcgtggatatgtatgcgtcggcgagcatcttgccgagccggacctgcgcctgggtgg 186
           |||||||||||| ||| || | ||| ||||  |||||||||  |||||||||| ||||||
Sbjct: 948 agagcgtggataggtaggccttggctagcaatttgccgagcttgacctgcgccggggtgg 889

                                                                  
Query: 187 tgaggtgagtgatgtcgttggcgatgggcagccccatggcgtccacgtacttgag 241
           ||||||| |||  ||||||||||||||| || ||| ||||||| |||||||||||
Sbjct: 888 tgaggtgcgtgtagtcgttggcgatggggaggcccttggcgtcgacgtacttgag 834

>dbj|AK061073.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-D05, full
           insert sequence
          Length = 1106

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 98/115 (85%)
 Strand = Plus / Minus

                                                                       
Query: 127 agagcgtggatatgtatgcgtcggcgagcatcttgccgagccggacctgcgcctgggtgg 186
           |||||||||||| ||| || | ||| ||||  |||||||||  |||||||||| ||||||
Sbjct: 949 agagcgtggataggtaggccttggctagcaatttgccgagcttgacctgcgccggggtgg 890

                                                                  
Query: 187 tgaggtgagtgatgtcgttggcgatgggcagccccatggcgtccacgtacttgag 241
           ||||||| |||  ||||||||||||||| || ||| ||||||| |||||||||||
Sbjct: 889 tgaggtgcgtgtagtcgttggcgatggggaggcccttggcgtcgacgtacttgag 835

>ref|XM_471008.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 849

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 330 ccaacctggatgacgaggaggttgggcaag 359
           ||||||||||||||||| || |||||||||
Sbjct: 641 ccaacctggatgacgagcagattgggcaag 612

>gb|AC093747.2| Homo sapiens BAC clone RP11-29L8 from 4, complete sequence
          Length = 146950

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 259    ccctctgctccttcctcaccag 280
              ||||||||||||||||||||||
Sbjct: 108874 ccctctgctccttcctcaccag 108853

>gb|AC138001.2| Oryza sativa chromosome 3 BAC OSJNBa0093M23 genomic sequence, complete
             sequence
          Length = 170020

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                         
Query: 181   gggtggtgaggtgagtgatgtcgttggcgatgggcagccccatggcgtccacgtacttga 240
             ||||||||||||| |||  ||| || || ||||| || ||| |||| |||||||||||||
Sbjct: 91023 gggtggtgaggtgcgtgtagtcattagccatggggaggcccttggcatccacgtacttga 90964

              
Query: 241   g 241
             |
Sbjct: 90963 g 90963

>emb|AL939109.1|SCO939109 Streptomyces coelicolor A3(2) complete genome; segment 6/29
          Length = 277000

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 146    gtcggcgagcatcttgccgag 166
              |||||||||||||||||||||
Sbjct: 257482 gtcggcgagcatcttgccgag 257462

>emb|AJ132353.1|PFL132353 Platichthys flesus CYP1A gene, exons 1-7
          Length = 6660

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 80   ttcatctgttgtgttgtccac 100
            |||||||||||||||||||||
Sbjct: 6104 ttcatctgttgtgttgtccac 6124

>gb|AC159282.2| Mus musculus BAC clone RP23-329M17 from chromosome 12, complete sequence
          Length = 210571

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 79     attcatctgttgtgttgtccacaac 103
              ||||||||||||||||||| |||||
Sbjct: 115777 attcatctgttgtgttgtctacaac 115753

>dbj|AP002455.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-93M11, complete
             sequence
          Length = 64000

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 172   cctgcgcctgggtggtgaggtgagt 196
             |||| ||||||||||||||||||||
Sbjct: 51698 cctgtgcctgggtggtgaggtgagt 51722

>dbj|AP002761.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-800A3, complete
            sequence
          Length = 196988

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 172  cctgcgcctgggtggtgaggtgagt 196
            |||| ||||||||||||||||||||
Sbjct: 8508 cctgtgcctgggtggtgaggtgagt 8532

>ref|NM_124501.2| Arabidopsis thaliana unknown protein AT5G51220 mRNA, complete cds
          Length = 1164

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 71  tcagatttattcatctgttg 90
           ||||||||||||||||||||
Sbjct: 92  tcagatttattcatctgttg 111

>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 214     gcagccccatggcgtccacg 233
               ||||||||||||||||||||
Sbjct: 3797607 gcagccccatggcgtccacg 3797626

>gb|AC186369.1| Pan troglodytes chromosome UNKNOWN clone CH251-21L17, complete sequence
          Length = 204239

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 261   ctctgctccttcctcaccag 280
             ||||||||||||||||||||
Sbjct: 77437 ctctgctccttcctcaccag 77456

>emb|AL669983.2| Human DNA sequence from clone RP11-220D10 on chromosome 9 Contains a
             ribosomal protein L35 (RPL35) pseudogene, complete
             sequence
          Length = 60725

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 259   ccctctgctccttcctcacc 278
             ||||||||||||||||||||
Sbjct: 50767 ccctctgctccttcctcacc 50786

>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16
          Length = 347356

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    ccgagccggacctgcgcctg 181
              ||||||||||||||||||||
Sbjct: 202930 ccgagccggacctgcgcctg 202949

>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14
          Length = 348251

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    ccgagccggacctgcgcctg 181
              ||||||||||||||||||||
Sbjct: 206372 ccgagccggacctgcgcctg 206391

>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12
          Length = 348134

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 162    ccgagccggacctgcgcctg 181
              ||||||||||||||||||||
Sbjct: 141469 ccgagccggacctgcgcctg 141450

>emb|X99563.1|CSRNA16SC Crenarchaeotal sp. 16S rRNA gene, isolate CB9
          Length = 1332

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 293 cccctgcttattcccctgcc 312
           ||||||||||||||||||||
Sbjct: 442 cccctgcttattcccctgcc 423

>dbj|AK138428.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched
            library, clone:A230103B15 product:Catenin alpha 1, full
            insert sequence
          Length = 2027

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 281  gtccagccacttcccctgct 300
            ||||||||||||||||||||
Sbjct: 2006 gtccagccacttcccctgct 2025

>gb|AC160055.2| Pan troglodytes BAC clone CH251-555N15 from chromosome unknown, complete
              sequence
          Length = 227737

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 261    ctctgctccttcctcaccag 280
              ||||||||||||||||||||
Sbjct: 203460 ctctgctccttcctcaccag 203441

>gb|AC074203.3| Homo sapiens chromosome 22 clone cos4 map 22q11, complete sequence
          Length = 42479

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 261   ctctgctccttcctcaccag 280
             ||||||||||||||||||||
Sbjct: 39384 ctctgctccttcctcaccag 39365

>gb|AC007707.14| Homo sapiens chromosome 11 clone rp11-442e11 map 11q23, complete
             sequence
          Length = 188963

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 261   ctctgctccttcctcaccag 280
             ||||||||||||||||||||
Sbjct: 70717 ctctgctccttcctcaccag 70736

>gb|AY194849.1| Homo sapiens plasminogen activator, urokinase receptor (PLAUR) gene,
            complete cds
          Length = 25423

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 267  tccttcctcaccaggtccag 286
            ||||||||||||||||||||
Sbjct: 8276 tccttcctcaccaggtccag 8257

>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 202     cgttggcgatgggcagcccc 221
               ||||||||||||||||||||
Sbjct: 1556531 cgttggcgatgggcagcccc 1556550

>dbj|AB023044.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MWD22
          Length = 87180

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    tcagatttattcatctgttg 90
             ||||||||||||||||||||
Sbjct: 56934 tcagatttattcatctgttg 56915

>gb|AC006953.1|AC006953 Homo sapiens chromosome 19, cosmid R28316, complete sequence
          Length = 38727

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   tccttcctcaccaggtccag 286
             ||||||||||||||||||||
Sbjct: 17487 tccttcctcaccaggtccag 17506

>dbj|AP006216.1| Homo sapiens genomic DNA, chromosome 11, clone:RP11-87O6, complete
             sequence
          Length = 177334

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 261   ctctgctccttcctcaccag 280
             ||||||||||||||||||||
Sbjct: 74110 ctctgctccttcctcaccag 74129

>dbj|AB053262.1| Arabidopsis thaliana gene for embryonic flower 2, complete cds
          Length = 8508

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 71   tcagatttattcatctgttg 90
            ||||||||||||||||||||
Sbjct: 2300 tcagatttattcatctgttg 2281

>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 146    gtcggcgagcatcttgccgagccg 169
              |||||||||||||| |||||||||
Sbjct: 463413 gtcggcgagcatctcgccgagccg 463390


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,000,214
Number of Sequences: 3902068
Number of extensions: 3000214
Number of successful extensions: 72603
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72329
Number of HSP's gapped (non-prelim): 274
length of query: 434
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 412
effective length of database: 17,147,199,772
effective search space: 7064646306064
effective search space used: 7064646306064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)