>ACPA_BACAN (Q44643) Capsule synthesis positive regulator acpA|
          Length = 483

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 13/38 (34%), Positives = 26/38 (68%)
 Frame = +1

Query: 262 LLNMIVPSRRFFTLYKLQQHLSIGSNTAAATKRVRHDL 375
           LLN+++  +R+FTL++L+++L+  S T      + +DL
Sbjct: 11  LLNILIEEKRWFTLFELEKNLNCSSKTIRKDISIINDL 48

>NIFA_ENTAG (P54930) Nif-specific regulatory protein|
          Length = 518

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 14/74 (18%)
 Frame = +1

Query: 259 PLLNMIVPSRRFFTLYKLQQHLSIGSNTAAATKRVRHDLSDH--------------RRDF 396
           P++     S +F  LY++   LS  SNTA A   +   L DH              R   
Sbjct: 9   PVIRRFDMSAQFTALYRISVALSQESNTARALAAILEVLHDHAFMQYGMVCLFDKERNAL 68

Query: 397 YKRNVHTIPGDRQK 438
           +  ++H I G+R+K
Sbjct: 69  FVESLHGIDGERKK 82

>LDH_CLOPE (Q8XP62) L-lactate dehydrogenase (EC 1.1.1.27) (L-LDH)|
          Length = 317

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 328 IGSNTAAATKRVRHDLSDHRRDFYKRNVHT-IPGDRQKLELT 450
           IGS T   T R+++ LS+H  D   RNVHT I G+    E+T
Sbjct: 144 IGSGTVLDTSRLKYMLSEH-FDIDARNVHTYIIGEHGDSEIT 184

>ZN553_MOUSE (Q3US17) Zinc finger protein 553|
          Length = 591

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 330 RLQHRRCHQAGTTRPL*PPARLLQAQCP 413
           R++H R HQ   TRP  PP+ LL+   P
Sbjct: 466 RVKHLRTHQGERTRPPPPPSTLLRPHNP 493

>MURE_NEIMA (Q9JSZ0) UDP-N-acetylmuramoylalanyl-D-glutamate--2,|
           6-diaminopimelate ligase (EC 6.3.2.13)
           (UDP-N-acetylmuramyl-tripeptide synthetase)
           (Meso-diaminopimelate-adding enzyme)
           (UDP-MurNAc-tripeptide synthetase)
          Length = 492

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
 Frame = -2

Query: 383 WSERSCRTRLVAAAVLEPIERC----CCNLYNVKNLLD 282
           W E  CRTRL+     + +  C    C N Y + N+LD
Sbjct: 291 WGEGKCRTRLLGRFNAQNLAACIALLCANGYPLDNVLD 328

>DYN1_RAT (P21575) Dynamin-1 (EC 3.6.5.5) (D100) (Dynamin, brain) (B-dynamin)|
          Length = 851

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +1

Query: 274 IVPSRRFFTLYKLQQHLSIGSNTAAATKRVRHDLSDHRRDFYKRNVHTIPGDRQKLE 444
           +   R+FF  +   +HL+    T    K +   L++H RD       T+PG R KL+
Sbjct: 252 LAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRD-------TLPGLRNKLQ 301

>DYN1_MOUSE (P39053) Dynamin-1 (EC 3.6.5.5)|
          Length = 867

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +1

Query: 274 IVPSRRFFTLYKLQQHLSIGSNTAAATKRVRHDLSDHRRDFYKRNVHTIPGDRQKLE 444
           +   R+FF  +   +HL+    T    K +   L++H RD       T+PG R KL+
Sbjct: 252 LAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRD-------TLPGLRNKLQ 301

>DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5)|
          Length = 864

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +1

Query: 274 IVPSRRFFTLYKLQQHLSIGSNTAAATKRVRHDLSDHRRDFYKRNVHTIPGDRQKLE 444
           +   R+FF  +   +HL+    T    K +   L++H RD       T+PG R KL+
Sbjct: 252 LAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRD-------TLPGLRNKLQ 301

>UPPP_TROWT (Q83GH4) Undecaprenyl-diphosphatase (EC 3.6.1.27) (Undecaprenyl|
           pyrophosphate phosphatase) (Bacitracin resistance
           protein)
          Length = 279

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 205 FLPIGQTGQGDAHVIIMMPLLNMIVPSRRFFTLYKL 312
           FLPI  T    AH+ I+  LLN+ VP R F +  +L
Sbjct: 17  FLPISST----AHMYILAKLLNLHVPGRFFLSSVQL 48

>UPPP_TROW8 (Q83HQ7) Undecaprenyl-diphosphatase (EC 3.6.1.27) (Undecaprenyl|
           pyrophosphate phosphatase) (Bacitracin resistance
           protein)
          Length = 279

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 205 FLPIGQTGQGDAHVIIMMPLLNMIVPSRRFFTLYKL 312
           FLPI  T    AH+ I+  LLN+ VP R F +  +L
Sbjct: 17  FLPISST----AHMYILAKLLNLHVPGRFFLSSVQL 48


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,995,784
Number of Sequences: 219361
Number of extensions: 1337603
Number of successful extensions: 3347
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3344
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)