Clone Name | rbart57g01 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 99.6 bits (50), Expect = 8e-18 Identities = 124/149 (83%) Strand = Plus / Plus Query: 320 acctctcaatcggctccaacaccgccgctgccaccaagcgggtacgacacgacctctctg 379 |||||||| ||||||||| | ||||||||||| || || ||||| ||||||| ||| || Sbjct: 12507253 acctctcagtcggctccagcgccgccgctgccgccgagagggtaggacacgagctccctc 12507312 Query: 380 accaccggcgcgacttctacaagcgcaatgtccataccatacccggagacaggcagaagc 439 |||||||| |||| || || | ||| || ||||| || ||||||||||| ||||| ||| Sbjct: 12507313 accaccgggccgacctccaccaacgcgatatccatcccgtacccggagacgggcagcagc 12507372 Query: 440 ttgagctcacggagcacgcanaaagcctc 468 |||||||| ||||||||||| || ||||| Sbjct: 12507373 ttgagctcgcggagcacgcagaaggcctc 12507401 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/81 (85%), Gaps = 4/81 (4%) Strand = Plus / Plus Query: 112 attatcaaccaaaagattaaacaattaaaaataagaaaatactgtatatgcggtaggata 171 ||||||||||||||||||||| || ||| | || ||||||||||| || ||||||| Sbjct: 12504640 attatcaaccaaaagattaaataaataattagaa--aaatactgtatgtgt--taggata 12504695 Query: 172 cagtatgatctacccttcttt 192 |||||||||||| |||||||| Sbjct: 12504696 cagtatgatctagccttcttt 12504716
>dbj|AP005637.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0711A01 Length = 162400 Score = 99.6 bits (50), Expect = 8e-18 Identities = 124/149 (83%) Strand = Plus / Plus Query: 320 acctctcaatcggctccaacaccgccgctgccaccaagcgggtacgacacgacctctctg 379 |||||||| ||||||||| | ||||||||||| || || ||||| ||||||| ||| || Sbjct: 22580 acctctcagtcggctccagcgccgccgctgccgccgagagggtaggacacgagctccctc 22639 Query: 380 accaccggcgcgacttctacaagcgcaatgtccataccatacccggagacaggcagaagc 439 |||||||| |||| || || | ||| || ||||| || ||||||||||| ||||| ||| Sbjct: 22640 accaccgggccgacctccaccaacgcgatatccatcccgtacccggagacgggcagcagc 22699 Query: 440 ttgagctcacggagcacgcanaaagcctc 468 |||||||| ||||||||||| || ||||| Sbjct: 22700 ttgagctcgcggagcacgcagaaggcctc 22728 Score = 54.0 bits (27), Expect = 4e-04 Identities = 69/81 (85%), Gaps = 4/81 (4%) Strand = Plus / Plus Query: 112 attatcaaccaaaagattaaacaattaaaaataagaaaatactgtatatgcggtaggata 171 ||||||||||||||||||||| || ||| | || ||||||||||| || ||||||| Sbjct: 19967 attatcaaccaaaagattaaataaataattagaa--aaatactgtatgtgt--taggata 20022 Query: 172 cagtatgatctacccttcttt 192 |||||||||||| |||||||| Sbjct: 20023 cagtatgatctagccttcttt 20043
>ref|XM_450739.1| Oryza sativa (japonica cultivar-group), mRNA Length = 711 Score = 89.7 bits (45), Expect = 8e-15 Identities = 116/140 (82%) Strand = Plus / Minus Query: 329 tcggctccaacaccgccgctgccaccaagcgggtacgacacgacctctctgaccaccggc 388 ||||||||| | ||||||||||| || || ||||| ||||||| ||| || |||||||| Sbjct: 707 tcggctccagcgccgccgctgccgccgagagggtaggacacgagctccctcaccaccggg 648 Query: 389 gcgacttctacaagcgcaatgtccataccatacccggagacaggcagaagcttgagctca 448 |||| || || | ||| || ||||| || ||||||||||| ||||| ||||||||||| Sbjct: 647 ccgacctccaccaacgcgatatccatcccgtacccggagacgggcagcagcttgagctcg 588 Query: 449 cggagcacgcanaaagcctc 468 ||||||||||| || ||||| Sbjct: 587 cggagcacgcagaaggcctc 568
>gb|BT017069.1| Zea mays clone EL01N0358F10.c mRNA sequence Length = 645 Score = 56.0 bits (28), Expect = 1e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 398 acaagcgcaatgtccataccatacccggagacaggcagaagcttgagctcacggagcacg 457 |||||||| |||||||| || ||||| ||||| || || ||||| ||||| ||||||||| Sbjct: 242 acaagcgcgatgtccatcccgtacccagagacggggagcagctttagctctcggagcacg 183 Query: 458 canaaagcctc 468 || || ||||| Sbjct: 182 cagaaggcctc 172
>gb|AC146045.3| Pan troglodytes BAC clone RP43-14B22 from 7, complete sequence Length = 151553 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Minus Query: 110 atattatcaaccaaaagattaaacaatt 137 |||||||||||||||||||||||||||| Sbjct: 94632 atattatcaaccaaaagattaaacaatt 94605
>emb|AL592221.6| Human DNA sequence from clone RP11-216F5 on chromosome 9, complete sequence Length = 154827 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Plus Query: 110 atattatcaaccaaaagattaaacaatt 137 |||||||||||||||||||||||||||| Sbjct: 124081 atattatcaaccaaaagattaaacaatt 124108
>gb|AC003668.2| Homo sapiens X PAC RP1-233D13 (Roswell Park Cancer Institute Human PAC Library ) complete sequence Length = 145859 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Plus Query: 110 atattatcaaccaaaagattaaacaatt 137 |||||||||||||||||||||||||||| Sbjct: 45567 atattatcaaccaaaagattaaacaatt 45594
>gb|AC129319.4| Mus musculus BAC clone RP24-127J16 from chromosome 8, complete sequence Length = 169835 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 127 attaaacaattaaaaataagaaaata 152 |||||||| ||||||||||||||||| Sbjct: 68702 attaaacatttaaaaataagaaaata 68677
>gb|AC102625.8| Mus musculus chromosome 8, clone RP23-453E3, complete sequence Length = 167288 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 127 attaaacaattaaaaataagaaaata 152 |||||||| ||||||||||||||||| Sbjct: 154226 attaaacatttaaaaataagaaaata 154201
>gb|AC011489.6|AC011489 Homo sapiens chromosome 19 clone CTB-179K24, complete sequence Length = 164034 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 130 aaacaattaaaaataagaaaat 151 |||||||||||||||||||||| Sbjct: 135226 aaacaattaaaaataagaaaat 135205
>emb|BX248510.3| Zebrafish DNA sequence from clone DKEY-88P24 in linkage group 10, complete sequence Length = 170386 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 131 aacaattaaaaataagaaaata 152 |||||||||||||||||||||| Sbjct: 17739 aacaattaaaaataagaaaata 17760
>gb|AC102784.8| Mus musculus chromosome 1, clone RP23-408B17, complete sequence Length = 195644 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 127 attaaacaattaaaaataagaaaat 151 ||||||||||||||||||| ||||| Sbjct: 150472 attaaacaattaaaaataataaaat 150496
>ref|XM_615736.2| PREDICTED: Bos taurus hypothetical LOC535628 (LOC535628), mRNA Length = 2788 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 130 aaacaattaaaaataagaaaa 150 ||||||||||||||||||||| Sbjct: 2472 aaacaattaaaaataagaaaa 2452
>gb|AY663383.1| Aedes albopictus clone AAR3 voltage-dependent para-like sodium channel mRNA, partial cds, alternatively spliced Length = 1878 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 atcaaccaaaagattaaacaa 135 ||||||||||||||||||||| Sbjct: 1460 atcaaccaaaagattaaacaa 1440
>gb|AY663382.1| Aedes albopictus clone AAR2 voltage-dependent para-like sodium channel mRNA, partial cds, alternatively spliced Length = 1809 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 atcaaccaaaagattaaacaa 135 ||||||||||||||||||||| Sbjct: 1391 atcaaccaaaagattaaacaa 1371
>emb|AL590032.16| Human DNA sequence from clone RP11-51E20 on chromosome 10, complete sequence Length = 156048 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 121 caaaagattaaacaattaaaaataa 145 |||||||||||| |||||||||||| Sbjct: 54562 caaaagattaaaaaattaaaaataa 54586
>emb|AL162576.27| Human DNA sequence from clone RP11-568F20 on chromosome 13 Contains a ubiquitin pseudogene, complete sequence Length = 105783 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 127 attaaacaattaaaaataaga 147 ||||||||||||||||||||| Sbjct: 26766 attaaacaattaaaaataaga 26786
>gb|AC021451.8| Homo sapiens chromosome 8, clone RP11-101E19, complete sequence Length = 173127 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 122 aaaagattaaacaattaaaaataagaaaa 150 |||| |||||| ||||||||||||||||| Sbjct: 138086 aaaaaattaaaaaattaaaaataagaaaa 138114
>gb|AC091163.5| Homo sapiens chromosome 8, clone RP11-350F16, complete sequence Length = 165605 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 122 aaaagattaaacaattaaaaataagaaaa 150 |||| |||||| ||||||||||||||||| Sbjct: 50181 aaaaaattaaaaaattaaaaataagaaaa 50209
>emb|AL772256.15| Mouse DNA sequence from clone RP23-141N19 on chromosome 2, complete sequence Length = 191321 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 ttaaacaattaaaaataagaa 148 ||||||||||||||||||||| Sbjct: 184434 ttaaacaattaaaaataagaa 184414
>emb|BX001012.6| Zebrafish DNA sequence from clone CH211-11C20 in linkage group 4, complete sequence Length = 158481 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 135 attaaaaataagaaaatactgtata 159 |||||||||||||||||||| |||| Sbjct: 119382 attaaaaataagaaaatactttata 119406
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 438 gcttgagctcacggagcacgc 458 ||||||||||||||||||||| Sbjct: 411236 gcttgagctcacggagcacgc 411216
>ref|XM_634063.1| Dictyostelium discoideum hypothetical protein (DDB0218479), partial mRNA Length = 6369 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 aaacaattaaaaataagaaa 149 |||||||||||||||||||| Sbjct: 6317 aaacaattaaaaataagaaa 6336
>ref|XM_629651.1| Dictyostelium discoideum hypothetical protein (DDB0184429), partial mRNA Length = 6255 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 atattatcaaccaaaagatt 129 |||||||||||||||||||| Sbjct: 3756 atattatcaaccaaaagatt 3775
>ref|XM_629054.1| Dictyostelium discoideum hypothetical protein (DDB0192052), partial mRNA Length = 2976 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 ttaaacaattaaaaataagaaaat 151 ||||||||||||||| |||||||| Sbjct: 344 ttaaacaattaaaaaaaagaaaat 367
>gb|AC163624.4| Mus musculus BAC clone RP24-558P12 from chromosome 3, complete sequence Length = 197711 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 aaaataagaaaatactgtat 158 |||||||||||||||||||| Sbjct: 193925 aaaataagaaaatactgtat 193944
>gb|AC145795.2| Xenopus tropicalis chromosome CH216-18M1, complete sequence Length = 161076 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 caattaaaaataagaaaata 152 |||||||||||||||||||| Sbjct: 95380 caattaaaaataagaaaata 95361
>emb|CR955034.5| Wallaby DNA sequence from clone GRWB-130P10, complete sequence Length = 176287 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 122 aaaagattaaacaattaaaaataa 145 ||||||||| |||||||||||||| Sbjct: 134502 aaaagattagacaattaaaaataa 134479
>emb|CR759824.9| Zebrafish DNA sequence from clone DKEY-81E3 in linkage group 13, complete sequence Length = 174086 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 aaaagattaaacaattaaaa 141 |||||||||||||||||||| Sbjct: 94262 aaaagattaaacaattaaaa 94281
>gb|AC108410.9| Mus musculus chromosome 7, clone RP23-480A17, complete sequence Length = 184780 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 caattaaaaataagaaaata 152 |||||||||||||||||||| Sbjct: 103968 caattaaaaataagaaaata 103949 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 caattaaaaataagaaaata 152 |||||||||||||||||||| Sbjct: 19938 caattaaaaataagaaaata 19957
>ref|XM_721305.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05868) partial mRNA Length = 3096 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 taaaaataagaaaatactgt 156 |||||||||||||||||||| Sbjct: 131 taaaaataagaaaatactgt 112
>gb|AC159094.4| Mus musculus chromosome 3, clone RP23-277N17, complete sequence Length = 192453 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 122 aaaagattaaacaattaaaaataa 145 ||||||||||| |||||||||||| Sbjct: 174759 aaaagattaaagaattaaaaataa 174782
>gb|AC144928.17| Medicago truncatula clone mth2-8a18, complete sequence Length = 138948 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 aattaaaaataagaaaatac 153 |||||||||||||||||||| Sbjct: 27510 aattaaaaataagaaaatac 27529
>emb|AL845433.4| Human DNA sequence from clone RP11-674N8 on chromosome X Contains a chromobox homolog 5 (HP1 alpha homolog, Drosophila) (CBX5) pseudogene, the 5' end of the NHS gene for Nance-Horan syndrome (congenital cataracts and dental anomalies) and two CpG islands, complete sequence Length = 200476 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 aaacaattaaaaataagaaa 149 |||||||||||||||||||| Sbjct: 65485 aaacaattaaaaataagaaa 65504
>emb|AL663118.2| Human DNA sequence from clone RP13-377G1 on chromosome Xp11.22-11.3 Contains the 3' end of the CLCN5 gene for chloride channel 5 (nephrolithiasis 2, X-linked, Dent disease), the gene for a novel protein similar to peptide YY (PYY) and two CpG islands, complete sequence Length = 146633 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 aaagattaaacaattaaaaa 142 |||||||||||||||||||| Sbjct: 70897 aaagattaaacaattaaaaa 70878
>emb|AL589940.10| Human DNA sequence from clone RP11-69H11 on chromosome 6, complete sequence Length = 23161 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 taaaaataagaaaatactgt 156 |||||||||||||||||||| Sbjct: 17648 taaaaataagaaaatactgt 17629
>emb|AL353573.10| Human DNA sequence from clone RP11-550E18 on chromosome 9 Contains a solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 (SLC25A5) (ANT2) pseudogene, complete sequence Length = 166664 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 caattaaaaataagaaaata 152 |||||||||||||||||||| Sbjct: 111789 caattaaaaataagaaaata 111770
>emb|AL158053.14| Human DNA sequence from clone RP11-156J23 on chromosome Xq21.2-21.33 Contains a discs, large homolog 7 (Drosophila) (DLG7) pseudogene, complete sequence Length = 177722 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 caattaaaaataagaaaata 152 |||||||||||||||||||| Sbjct: 62694 caattaaaaataagaaaata 62713
>emb|AL136987.11| Human DNA sequence from clone RP5-1011O1 on chromosome 1 Contains the RGS1 gene for regulator of G-protein signalling 1, complete sequence Length = 122562 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 acagtttcagtttgtgaagt 89 |||||||||||||||||||| Sbjct: 92077 acagtttcagtttgtgaagt 92096
>gb|AC119618.4| Homo sapiens X BAC RP11-430A19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 76836 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 aaagattaaacaattaaaaa 142 |||||||||||||||||||| Sbjct: 35177 aaagattaaacaattaaaaa 35158
>gb|AC124917.4| Homo sapiens chromosome 1 clone RP5-910L7, complete sequence Length = 156168 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 131 aacaattaaaaataagaaaatact 154 ||||||||||||||| |||||||| Sbjct: 145836 aacaattaaaaataataaaatact 145859
>gb|AC114492.6| Homo sapiens chromosome 1 clone RP11-319C21, complete sequence Length = 141677 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 aacaattaaaaataagaaaa 150 |||||||||||||||||||| Sbjct: 20487 aacaattaaaaataagaaaa 20506
>emb|AL031906.1|HS90O12 Human DNA sequence from clone RP1-90O12 on chromosome 6p24.1-25.1, complete sequence Length = 99035 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 ttaaaaataagaaaatactg 155 |||||||||||||||||||| Sbjct: 47703 ttaaaaataagaaaatactg 47684
>emb|CR387919.7| Zebrafish DNA sequence from clone DKEY-120I24, complete sequence Length = 110378 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 taaacaattaaaaataagaaaata 152 ||||||| |||||||||||||||| Sbjct: 93398 taaacaaataaaaataagaaaata 93375
>gb|AC162877.2| Mus musculus chromosome 7, clone RP24-211E6, complete sequence Length = 158727 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 caattaaaaataagaaaata 152 |||||||||||||||||||| Sbjct: 52151 caattaaaaataagaaaata 52132
>emb|Z67961.2|SPAC30D11 S.pombe chromosome I cosmid c30D11 Length = 29653 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 127 attaaacaattaaaaataagaaaa 150 |||||||||| ||||||||||||| Sbjct: 2415 attaaacaataaaaaataagaaaa 2438
>emb|X81846.1|SPHUS5 S.pombe hus5 gene Length = 3315 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 127 attaaacaattaaaaataagaaaa 150 |||||||||| ||||||||||||| Sbjct: 2437 attaaacaataaaaaataagaaaa 2414
>emb|AJ586571.1| Streptococcus thermophilus genomic island CIME19258 and flanking regions Length = 15275 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 ttgttaaatatgatagtccc 281 |||||||||||||||||||| Sbjct: 8361 ttgttaaatatgatagtccc 8380
>emb|BX571723.7| Zebrafish DNA sequence from clone DKEYP-51D5 in linkage group 17, complete sequence Length = 201159 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 tttttccaacttagcttctt 209 |||||||||||||||||||| Sbjct: 129645 tttttccaacttagcttctt 129664
>emb|CR762439.7| Zebrafish DNA sequence from clone DKEY-261I20 in linkage group 13, complete sequence Length = 136285 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 taagaaaatactgtatatgc 162 |||||||||||||||||||| Sbjct: 65214 taagaaaatactgtatatgc 65233
>emb|BX936318.10| Zebrafish DNA sequence from clone CH211-229O17 in linkage group 13, complete sequence Length = 158912 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 taagaaaatactgtatatgc 162 |||||||||||||||||||| Sbjct: 105161 taagaaaatactgtatatgc 105142
>emb|CR385090.8| Zebrafish DNA sequence from clone CH211-245M19 in linkage group 5, complete sequence Length = 140222 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 attaaaaataagaaaatactgtat 158 |||||||||||||||||| ||||| Sbjct: 77647 attaaaaataagaaaataatgtat 77670
>emb|BX511059.10| Zebrafish DNA sequence from clone CH211-253P10 in linkage group 14, complete sequence Length = 107605 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 127 attaaacaattaaaaataagaaaa 150 ||||||||||||||||||| |||| Sbjct: 15801 attaaacaattaaaaataataaaa 15778
>emb|BX897670.7| Zebrafish DNA sequence from clone DKEY-117L15 in linkage group 8, complete sequence Length = 107559 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 attaaaaataagaaaatactgtat 158 |||||||||||||||||| ||||| Sbjct: 41316 attaaaaataagaaaataatgtat 41339
>gb|AC024224.33| Homo sapiens 12 BAC RP11-133L14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 165414 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 taaacaattaaaaataagaaaata 152 |||||| ||||||||||||||||| Sbjct: 37790 taaacagttaaaaataagaaaata 37767
>emb|BX323062.10| Zebrafish DNA sequence from clone DKEYP-38H2 in linkage group 5, complete sequence Length = 199133 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 taaaaataagaaaatactgt 156 |||||||||||||||||||| Sbjct: 147822 taaaaataagaaaatactgt 147841
>gb|AC013644.7| Homo sapiens chromosome 8, clone RP11-17A4, complete sequence Length = 168477 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 aattaaaaataagaaaatac 153 |||||||||||||||||||| Sbjct: 96970 aattaaaaataagaaaatac 96951
>gb|AC011416.3| Homo sapiens chromosome 5 clone CTB-88F18, complete sequence Length = 142357 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 129 taaacaattaaaaataagaaaata 152 |||||||| ||||||||||||||| Sbjct: 123271 taaacaataaaaaataagaaaata 123294
>gb|AC092805.2| Homo sapiens chromosome 1 clone RP11-99A8, complete sequence Length = 162587 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 131 aacaattaaaaataagaaaatact 154 ||||||||||||||| |||||||| Sbjct: 56000 aacaattaaaaataataaaatact 56023
>gb|AC160053.2| Mus musculus BAC clone RP23-339M18 from chromosome 9, complete sequence Length = 188000 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 atattatcaaccaaaagattaaac 133 |||||||||||||||| ||||||| Sbjct: 182432 atattatcaaccaaaatattaaac 182409
>gb|AC154261.2| Mus musculus BAC clone RP24-303N7 from chromosome 9, complete sequence Length = 172079 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 atattatcaaccaaaagattaaac 133 |||||||||||||||| ||||||| Sbjct: 66398 atattatcaaccaaaatattaaac 66375
>gb|AC153923.4| Mus musculus 6 BAC RP23-82I13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 248275 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 gattaaacaattaaaaataa 145 |||||||||||||||||||| Sbjct: 106659 gattaaacaattaaaaataa 106678
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 caacaccgccgctgccacca 355 |||||||||||||||||||| Sbjct: 11677165 caacaccgccgctgccacca 11677184
>gb|AC010140.3|AC010140 Homo sapiens BAC clone RP11-218E11 from Y, complete sequence Length = 148342 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 caattaaaaataagaaaata 152 |||||||||||||||||||| Sbjct: 82199 caattaaaaataagaaaata 82218
>gb|AC022148.6| Homo sapiens chromosome 19 clone CTD-3064H18, complete sequence Length = 196954 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 ttaaaaataagaaaatactgtata 159 ||||||||||| |||||||||||| Sbjct: 180381 ttaaaaataagcaaatactgtata 180358
>gb|AC009085.5|AC009085 Homo sapiens chromosome 16 clone RP11-368L12, complete sequence Length = 155860 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 127 attaaacaattaaaaataagaaaa 150 ||||||| |||||||||||||||| Sbjct: 22430 attaaactattaaaaataagaaaa 22453
>gb|AC020584.9| Homo sapiens BAC clone RP11-70G18 from 2, complete sequence Length = 159336 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 cattcattacataaacttaa 61 |||||||||||||||||||| Sbjct: 39792 cattcattacataaacttaa 39811
>gb|AC008806.4|AC008806 Homo sapiens chromosome 19 clone CTD-2086O20, complete sequence Length = 135173 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 ttaaaaataagaaaatactgtata 159 ||||||||||| |||||||||||| Sbjct: 533 ttaaaaataagcaaatactgtata 510
>dbj|AP006344.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0680C01 Length = 145580 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 caacaccgccgctgccacca 355 |||||||||||||||||||| Sbjct: 35324 caacaccgccgctgccacca 35343
>emb|AJ239323.3|HS519N18 Homo sapiens chromosome X sequencefrom PAC RPCI-3 519N18 map Xp11.2, complete sequence Length = 102853 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 aaagattaaacaattaaaaa 142 |||||||||||||||||||| Sbjct: 29022 aaagattaaacaattaaaaa 29003
>gb|AC122531.4| Mus musculus BAC clone RP24-536C4 from 3, complete sequence Length = 188887 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 aaaataagaaaatactgtat 158 |||||||||||||||||||| Sbjct: 36212 aaaataagaaaatactgtat 36231
>emb|BX004787.8| Zebrafish DNA sequence from clone DKEY-28B17 in linkage group 23, complete sequence Length = 198036 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 127 attaaacaattaaaaataagaaaa 150 ||||||||||| |||||||||||| Sbjct: 6824 attaaacaatttaaaataagaaaa 6847
>gb|AC005915.1|AC005915 Homo sapiens chromosome 5, Bac clone 58g14 (LBNL H76), complete sequence Length = 151026 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 taaacaattaaaaataagaaaata 152 |||||||| ||||||||||||||| Sbjct: 114711 taaacaataaaaaataagaaaata 114688
>gb|AC144815.3| Mus musculus BAC clone RP24-289M2 from 12, complete sequence Length = 144707 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 122 aaaagattaaacaattaaaaataa 145 ||||||||||||| |||||||||| Sbjct: 38901 aaaagattaaacatttaaaaataa 38878
>gb|AC134843.4| Mus musculus BAC clone RP24-388C21 from 3, complete sequence Length = 205200 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 122 aaaagattaaacaattaaaaataa 145 ||||||||||| |||||||||||| Sbjct: 26519 aaaagattaaagaattaaaaataa 26542
>gb|AC140430.3| Mus musculus BAC clone RP24-105B23 from 3, complete sequence Length = 169012 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 aaaataagaaaatactgtat 158 |||||||||||||||||||| Sbjct: 105752 aaaataagaaaatactgtat 105771
>gb|AC133709.11| Medicago truncatula clone mth2-7b3, complete sequence Length = 138950 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 aattaaaaataagaaaatac 153 |||||||||||||||||||| Sbjct: 111440 aattaaaaataagaaaatac 111421
>emb|AL935273.6| Zebrafish DNA sequence from clone CH211-274L13, complete sequence Length = 175839 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 129 taaacaattaaaaataagaaaata 152 ||||||| |||||||||||||||| Sbjct: 157047 taaacaaataaaaataagaaaata 157070 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 taaacaattaaaaataagaaaata 152 ||||||| |||||||||||||||| Sbjct: 141346 taaacaaataaaaataagaaaata 141323
>gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete genome Length = 2056416 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tatcaaccaaaagattaaac 133 |||||||||||||||||||| Sbjct: 1025957 tatcaaccaaaagattaaac 1025976
>emb|AL824702.9| Mouse DNA sequence from clone RP23-466L3 on chromosome 4, complete sequence Length = 90122 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 aaacaattaaaaataagaaa 149 |||||||||||||||||||| Sbjct: 82257 aaacaattaaaaataagaaa 82238
>emb|AL805953.5| Mouse DNA sequence from clone RP23-189N21 on chromosome 2, complete sequence Length = 173345 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 caattaaaaataagaaaata 152 |||||||||||||||||||| Sbjct: 99613 caattaaaaataagaaaata 99594 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,590,773 Number of Sequences: 3902068 Number of extensions: 4590773 Number of successful extensions: 116647 Number of sequences better than 10.0: 81 Number of HSP's better than 10.0 without gapping: 81 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 116402 Number of HSP's gapped (non-prelim): 245 length of query: 468 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 446 effective length of database: 17,147,199,772 effective search space: 7647651098312 effective search space used: 7647651098312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)