ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart57f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IGF1R_XENLA (O73798) Insulin-like growth factor 1 receptor precu... 29 4.9
2SRB6_CAEEL (P54141) Serpentine receptor class beta-6 (Protein sr... 28 6.4

>IGF1R_XENLA (O73798) Insulin-like growth factor 1 receptor precursor (EC|
           2.7.10.1) (xIGF-1R) (xIGFR) [Contains: Insulin-like
           growth factor 1 receptor alpha chain; Insulin-like
           growth factor 1 receptor beta chain]
          Length = 1358

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +1

Query: 1   GNKSKNILMKTQAHTPSVPIYNRSISRTSIFGRTK**TLNKWTTPSVP 144
           G KSK I M+T A  PS+P    S S +S         + KW  PS+P
Sbjct: 590 GAKSKIIYMRTDAAVPSIPQDMISASNSSSQ------LVVKWNPPSLP 631



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>SRB6_CAEEL (P54141) Serpentine receptor class beta-6 (Protein srb-6)|
          Length = 337

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -2

Query: 198 LYTSVCTLLVNPLKRLIFRNGGSSPFIQCLLLRPSEYTCPRNRSIVY 58
           L  S C LLVNP+K  IF+N G    I C +L     T  R  ++++
Sbjct: 82  LAVSKCDLLVNPVKNRIFQNIGVFG-ISCPMLTILGITAERLLALIF 127


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,777,969
Number of Sequences: 219361
Number of extensions: 959746
Number of successful extensions: 1621
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1621
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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