ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart57f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYI_ENTFA (Q836V1) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 32 0.51
2SYL_PORGI (Q7MW49) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 30 1.1
3Z585B_PONPY (Q5RB30) Zinc finger protein 585B 30 1.1
4Z585B_HUMAN (Q52M93) Zinc finger protein 585B (zinc finger prote... 30 1.5
5EURL_MOUSE (Q9D7G4) Protein EURL homolog 30 2.0
6SYL_BACTN (Q8A329) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 29 3.3
7GPA6_CAEEL (Q93743) Guanine nucleotide-binding protein alpha-6 s... 28 4.3
8DAX1_PIG (P79386) Nuclear receptor 0B1 (Nuclear receptor DAX-1) 28 5.7
9SYL_BACFR (Q64MG4) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 28 7.4
10Z585A_PONPY (Q5RDX1) Zinc finger protein 585A 27 9.7
11Z585A_HUMAN (Q6P3V2) Zinc finger protein 585A 27 9.7

>SYI_ENTFA (Q836V1) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 926

 Score = 31.6 bits (70), Expect = 0.51
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 24  WSFIYSMEKLLQLATQCNKPSRHALKQQESIFKTWM-HLDLQEKN*FRDEVLKTRRHAAH 200
           WSF+   E+ +QLA     P       +E +  TW   +D      FRD VLK    A H
Sbjct: 767 WSFLQEEEEYVQLA---EFPGYETFTNEEELMDTWAAFMD------FRDNVLKALEEARH 817

Query: 201 S 203
           S
Sbjct: 818 S 818



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>SYL_PORGI (Q7MW49) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 925

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2

Query: 228 EYLGLTRANYALRDAVFSRPR 166
           ++LG  + NY LRDA+FSR R
Sbjct: 465 KHLGCVKVNYRLRDAIFSRQR 485



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>Z585B_PONPY (Q5RB30) Zinc finger protein 585B|
          Length = 769

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 126 WMHLDLQEKN*FRDEVLKTRRH 191
           W HLDL ++N +RD +L+T  H
Sbjct: 41  WQHLDLSQRNLYRDVMLETYSH 62



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>Z585B_HUMAN (Q52M93) Zinc finger protein 585B (zinc finger protein 41-like|
           protein)
          Length = 769

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 126 WMHLDLQEKN*FRDEVLKTRRH 191
           W HLDL ++N +RD +L+T  H
Sbjct: 41  WRHLDLSQRNLYRDVMLETYSH 62



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>EURL_MOUSE (Q9D7G4) Protein EURL homolog|
          Length = 290

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 15  KANWSFIYSMEKLLQLATQCNKPSRHAL 98
           K NW   Y+  K L L ++C+K S+H L
Sbjct: 93  KINWIVQYAQNKNLDLESECSKTSQHPL 120



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>SYL_BACTN (Q8A329) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 944

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 222 LGLTRANYALRDAVFSRPR 166
           LG  + NY LRDA+FSR R
Sbjct: 470 LGRVKVNYRLRDAIFSRQR 488



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>GPA6_CAEEL (Q93743) Guanine nucleotide-binding protein alpha-6 subunit|
          Length = 364

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +3

Query: 30  FIYSMEKLLQLATQCNKPSRHALKQQESIFKTWMHLDL 143
           FI SM    QL  + NK +R  +KQ   IFKT +H DL
Sbjct: 234 FIVSMSDYDQLDPEDNKYNR--MKQSYEIFKTIVHSDL 269



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>DAX1_PIG (P79386) Nuclear receptor 0B1 (Nuclear receptor DAX-1)|
          Length = 471

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 230 AVRGLKTRCWSEPSAAARRGHMKALMIHVPGFPGL 334
           A++G   +CWS   +     ++K  ++  P  PGL
Sbjct: 361 AIKGFLAKCWSLDISTKEYAYLKGTVLFNPDLPGL 395



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>SYL_BACFR (Q64MG4) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 943

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 237 LTAEYLGLTRANYALRDAVFSRPR 166
           + A  LG  + N+ LRDA+FSR R
Sbjct: 464 IKATGLGRVKVNFRLRDAIFSRQR 487



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>Z585A_PONPY (Q5RDX1) Zinc finger protein 585A|
          Length = 737

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 126 WMHLDLQEKN*FRDEVLKTRRH 191
           W HLD  ++N +RD +L+T  H
Sbjct: 9   WRHLDPSQRNLYRDVMLETYSH 30



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>Z585A_HUMAN (Q6P3V2) Zinc finger protein 585A|
          Length = 769

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 126 WMHLDLQEKN*FRDEVLKTRRH 191
           W HLD  ++N +RD +L+T  H
Sbjct: 41  WRHLDPSQRNLYRDVMLETYSH 62


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,934,599
Number of Sequences: 219361
Number of extensions: 766484
Number of successful extensions: 1902
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1901
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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