ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart57f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC102892.9| Mus musculus chromosome 5, clone RP24-362B10, com... 44 0.41
2gb|AC161516.9| Mus musculus chromosome 5, clone RP23-130C18, com... 44 0.41
3gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 44 0.41
4gb|BC106946.1| Homo sapiens mannan-binding lectin serine peptida... 42 1.6
5gb|BC106945.1| Homo sapiens mannan-binding lectin serine peptida... 42 1.6
6ref|XM_516941.1| PREDICTED: Pan troglodytes similar to mannan-bi... 42 1.6
7ref|NM_052942.2| Homo sapiens guanylate binding protein 5 (GBP5)... 42 1.6
8gb|AF430642.1| Homo sapiens GBP-5b mRNA, complete cds; alternati... 42 1.6
9gb|AF430643.1| Homo sapiens GBP-5a mRNA, complete cds; alternati... 42 1.6
10gb|AC123731.9| Mus musculus chromosome 15, clone RP23-458N23, co... 42 1.6
11gb|BC031639.1| Homo sapiens guanylate binding protein 5, mRNA (c... 42 1.6
12gb|AF328727.1| Homo sapiens CTCL tumor antigen GBP-5ta mRNA, par... 42 1.6
13gb|BC039724.1| Homo sapiens mannan-binding lectin serine peptida... 42 1.6
14gb|AY358953.1| Homo sapiens clone DNA61875 ALEI2427 (UNQ2427) mR... 42 1.6
15ref|NM_001879.4| Homo sapiens mannan-binding lectin serine pepti... 42 1.6
16ref|NM_001031849.1| Homo sapiens mannan-binding lectin serine pe... 42 1.6
17ref|NM_139125.2| Homo sapiens mannan-binding lectin serine pepti... 42 1.6
18gb|BC033761.1| Homo sapiens, Similar to guanylate binding protei... 42 1.6
19gb|AC099063.2| Homo sapiens chromosome 1 clone RP4-620F22, compl... 42 1.6
20emb|CR749615.1| Homo sapiens mRNA; cDNA DKFZp686I01199 (from clo... 42 1.6
21gb|AC007920.18| Homo sapiens 3 BAC RP11-208N14 (Roswell Park Can... 42 1.6
22gb|AF288815.1|AF288815 Homo sapiens guanylate binding protein 5 ... 42 1.6
23gb|AC157517.2| Mus musculus BAC clone RP24-69C11 from chromosome... 42 1.6
24gb|AF284421.1|AF284421 Homo sapiens complement factor MASP-3 mRN... 42 1.6
25dbj|D61695.2| Homo sapiens MASP gene for mannose-binding protein... 42 1.6
26dbj|AB007617.2| Homo sapiens gene for MASP/P100, complete cds 42 1.6
27gb|AC090155.10| Homo sapiens chromosome 8, clone RP11-738G5, com... 42 1.6
28gb|AC123835.4| Mus musculus BAC clone RP23-365J20 from chromosom... 42 1.6
29gb|AY892993.1| Synthetic construct Homo sapiens clone FLH119683.... 42 1.6
30gb|AY890530.1| Synthetic construct Homo sapiens clone FLH119687.... 42 1.6
31dbj|AK129893.1| Homo sapiens cDNA FLJ26383 fis, clone HRT06776, ... 42 1.6
32dbj|D28593.1|HUMMASP Human mRNA for MASP (mannose-binding protei... 42 1.6
33dbj|D17525.1| Human mRNA for precursor of P100 serine protease o... 42 1.6
34dbj|AK090479.1| Homo sapiens mRNA for FLJ00401 protein 42 1.6
35gb|AC147478.2| Pan troglodytes BAC clone CH251-571L4 from Y, com... 40 6.4
36emb|BX890590.11| Zebrafish DNA sequence from clone DKEY-15H19 in... 40 6.4
37gb|AC147131.2| Pan troglodytes BAC clone CH251-403A11 from Y, co... 40 6.4
38gb|AC122305.4| Mus musculus BAC clone RP23-284E19 from 9, comple... 40 6.4
39ref|NM_007648.1| Mus musculus CD3 antigen, epsilon polypeptide (... 40 6.4
40gb|AC090711.3| Homo sapiens chromosome 8 clone RP11-89H1 map 8q2... 40 6.4
41gb|AC083905.20| Homo sapiens 3 BAC RP11-124N24 (Roswell Park Can... 40 6.4
42emb|AJ720433.1| Gallus gallus mRNA for hypothetical protein, clo... 40 6.4
43ref|NM_001006195.1| Gallus gallus THO complex 5 (THOC5), mRNA 40 6.4
44gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 6.4
45gb|AC087110.3| Homo sapiens chromosome 8, clone CTD-2033B22, com... 40 6.4
46emb|BX666062.6| Zebrafish DNA sequence from clone DKEY-99O18 in ... 40 6.4
47gb|AC155655.8| Mus musculus 6 BAC RP24-66L18 (Roswell Park Cance... 40 6.4
48ref|XM_236196.2| PREDICTED: Rattus norvegicus CD3 antigen, epsil... 40 6.4
49gb|AC012150.16|AC012150 Homo sapiens 12 BAC RP11-946L16 (Roswell... 40 6.4
50gb|DQ124694.1| Aeromonas hydrophila FliML (fliML), FliNL (fliNL)... 40 6.4
51emb|AL845357.6| Zebrafish DNA sequence from clone DKEY-202M22 in... 40 6.4
52dbj|AK110281.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
53emb|AL355103.3|CNS05TCM Human chromosome 14 DNA sequence BAC R-6... 40 6.4
54gb|AC125532.3| Mus musculus BAC clone RP23-447C2 from 10, comple... 40 6.4
55emb|AL845367.6| Zebrafish DNA sequence from clone DKEYP-33D4 in ... 40 6.4
56gb|AC153971.3| Mus musculus 10 BAC RP24-254O21 (Roswell Park Can... 40 6.4
57gb|M23374.1|MUSCD3E5 Mus musculus CD3-epsilon gene, exon 5 40 6.4
58emb|AL359234.4|CNS05TEL Human chromosome 14 DNA sequence BAC C-2... 40 6.4
59gb|J02990.1|MUSTCEAA Mouse mRNA for T-cell receptor, T3-epsilon ... 40 6.4
60dbj|AB019489.1| Homo sapiens IDN4-GGTR6 mRNA, partial cds 40 6.4 
>gb|AC102892.9| Mus musculus chromosome 5, clone RP24-362B10, complete sequence
          Length = 158043

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                           
Query: 2     gcaaaagcaaggctatgtaatagccactgc 31
             ||||||||||||| ||||||||||||||||
Sbjct: 78358 gcaaaagcaaggc-atgtaatagccactgc 78386
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>gb|AC161516.9| Mus musculus chromosome 5, clone RP23-130C18, complete sequence
          Length = 226006

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                           
Query: 2     gcaaaagcaaggctatgtaatagccactgc 31
             ||||||||||||| ||||||||||||||||
Sbjct: 37815 gcaaaagcaaggc-atgtaatagccactgc 37843
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 388     tcaccgaggagtccaccaccggggtg 413
               ||||||||||| ||||||||||||||
Sbjct: 3735287 tcaccgaggagaccaccaccggggtg 3735262
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>gb|BC106946.1| Homo sapiens mannan-binding lectin serine peptidase 1 (C4/C2
           activating component of Ra-reactive factor), transcript
           variant 2, mRNA (cDNA clone MGC:126284 IMAGE:40034552),
           complete cds
          Length = 2544

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 218 ctgaatcactgggataggagt 238
           |||||||||||||||||||||
Sbjct: 183 ctgaatcactgggataggagt 163
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>gb|BC106945.1| Homo sapiens mannan-binding lectin serine peptidase 1 (C4/C2
           activating component of Ra-reactive factor), transcript
           variant 2, mRNA (cDNA clone MGC:126283 IMAGE:40034551),
           complete cds
          Length = 2544

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 218 ctgaatcactgggataggagt 238
           |||||||||||||||||||||
Sbjct: 183 ctgaatcactgggataggagt 163
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>ref|XM_516941.1| PREDICTED: Pan troglodytes similar to mannan-binding lectin serine
           protease 1 isoform 1, precursor; protease, serine, 5
           (mannose-binding protein-associated); manan-binding
           lectin serine protease-1; Ra-reactive factor serine
           protease p100 (LOC460925), mRNA
          Length = 1006

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 218 ctgaatcactgggataggagt 238
           |||||||||||||||||||||
Sbjct: 316 ctgaatcactgggataggagt 296
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>ref|NM_052942.2| Homo sapiens guanylate binding protein 5 (GBP5), mRNA
          Length = 2431

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 140  cgcagagtcagcaggatcttc 160
            |||||||||||||||||||||
Sbjct: 1034 cgcagagtcagcaggatcttc 1014
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>gb|AF430642.1| Homo sapiens GBP-5b mRNA, complete cds; alternatively spliced
          Length = 2428

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 140  cgcagagtcagcaggatcttc 160
            |||||||||||||||||||||
Sbjct: 1048 cgcagagtcagcaggatcttc 1028
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>gb|AF430643.1| Homo sapiens GBP-5a mRNA, complete cds; alternatively spliced
          Length = 2301

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 140 cgcagagtcagcaggatcttc 160
           |||||||||||||||||||||
Sbjct: 928 cgcagagtcagcaggatcttc 908
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>gb|AC123731.9| Mus musculus chromosome 15, clone RP23-458N23, complete sequence
          Length = 178222

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 50    caaaagacagtgcaagaagaa 70
             |||||||||||||||||||||
Sbjct: 70812 caaaagacagtgcaagaagaa 70792
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>gb|BC031639.1| Homo sapiens guanylate binding protein 5, mRNA (cDNA clone MGC:34645
            IMAGE:5173241), complete cds
          Length = 2431

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 140  cgcagagtcagcaggatcttc 160
            |||||||||||||||||||||
Sbjct: 1034 cgcagagtcagcaggatcttc 1014
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>gb|AF328727.1| Homo sapiens CTCL tumor antigen GBP-5ta mRNA, partial cds
          Length = 1968

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 140  cgcagagtcagcaggatcttc 160
            |||||||||||||||||||||
Sbjct: 1010 cgcagagtcagcaggatcttc 990
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>gb|BC039724.1| Homo sapiens mannan-binding lectin serine peptidase 1 (C4/C2
           activating component of Ra-reactive factor), mRNA (cDNA
           clone IMAGE:5243260), partial cds
          Length = 2065

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 218 ctgaatcactgggataggagt 238
           |||||||||||||||||||||
Sbjct: 458 ctgaatcactgggataggagt 438
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>gb|AY358953.1| Homo sapiens clone DNA61875 ALEI2427 (UNQ2427) mRNA, complete cds
          Length = 2237

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 140 cgcagagtcagcaggatcttc 160
           |||||||||||||||||||||
Sbjct: 873 cgcagagtcagcaggatcttc 853
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>ref|NM_001879.4| Homo sapiens mannan-binding lectin serine peptidase 1 (C4/C2
           activating component of Ra-reactive factor) (MASP1),
           transcript variant 1, mRNA
          Length = 4353

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 218 ctgaatcactgggataggagt 238
           |||||||||||||||||||||
Sbjct: 465 ctgaatcactgggataggagt 445
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>ref|NM_001031849.1| Homo sapiens mannan-binding lectin serine peptidase 1 (C4/C2
           activating component of Ra-reactive factor) (MASP1),
           transcript variant 3, mRNA
          Length = 2072

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 218 ctgaatcactgggataggagt 238
           |||||||||||||||||||||
Sbjct: 465 ctgaatcactgggataggagt 445
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>ref|NM_139125.2| Homo sapiens mannan-binding lectin serine peptidase 1 (C4/C2
           activating component of Ra-reactive factor) (MASP1),
           transcript variant 2, mRNA
          Length = 4137

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 218 ctgaatcactgggataggagt 238
           |||||||||||||||||||||
Sbjct: 465 ctgaatcactgggataggagt 445
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>gb|BC033761.1| Homo sapiens, Similar to guanylate binding protein 5, clone
           IMAGE:3857492, mRNA, partial cds
          Length = 1584

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 140 cgcagagtcagcaggatcttc 160
           |||||||||||||||||||||
Sbjct: 195 cgcagagtcagcaggatcttc 175
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>gb|AC099063.2| Homo sapiens chromosome 1 clone RP4-620F22, complete sequence
          Length = 110724

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 140   cgcagagtcagcaggatcttc 160
             |||||||||||||||||||||
Sbjct: 23227 cgcagagtcagcaggatcttc 23207
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>emb|CR749615.1| Homo sapiens mRNA; cDNA DKFZp686I01199 (from clone DKFZp686I01199)
          Length = 1778

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 218 ctgaatcactgggataggagt 238
           |||||||||||||||||||||
Sbjct: 425 ctgaatcactgggataggagt 405
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>gb|AC007920.18| Homo sapiens 3 BAC RP11-208N14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 173534

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 218   ctgaatcactgggataggagt 238
             |||||||||||||||||||||
Sbjct: 75927 ctgaatcactgggataggagt 75907
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>gb|AF288815.1|AF288815 Homo sapiens guanylate binding protein 5 mRNA, complete cds
          Length = 1761

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 140 cgcagagtcagcaggatcttc 160
           |||||||||||||||||||||
Sbjct: 510 cgcagagtcagcaggatcttc 490
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>gb|AC157517.2| Mus musculus BAC clone RP24-69C11 from chromosome 9, complete sequence
          Length = 189253

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 433    tcttggatggagcaggagagc 453
              |||||||||||||||||||||
Sbjct: 144044 tcttggatggagcaggagagc 144024
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>gb|AF284421.1|AF284421 Homo sapiens complement factor MASP-3 mRNA, complete cds
          Length = 3895

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 218 ctgaatcactgggataggagt 238
           |||||||||||||||||||||
Sbjct: 223 ctgaatcactgggataggagt 203
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>dbj|D61695.2| Homo sapiens MASP gene for mannose-binding protein associated serin
            protease, complete cds
          Length = 12134

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 218  ctgaatcactgggataggagt 238
            |||||||||||||||||||||
Sbjct: 3516 ctgaatcactgggataggagt 3496
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>dbj|AB007617.2| Homo sapiens gene for MASP/P100, complete cds
          Length = 14566

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 218  ctgaatcactgggataggagt 238
            |||||||||||||||||||||
Sbjct: 1298 ctgaatcactgggataggagt 1278
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>gb|AC090155.10| Homo sapiens chromosome 8, clone RP11-738G5, complete sequence
          Length = 192053

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 4      aaaagcaaggctatgtaatag 24
              |||||||||||||||||||||
Sbjct: 124175 aaaagcaaggctatgtaatag 124155
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>gb|AC123835.4| Mus musculus BAC clone RP23-365J20 from chromosome 9, complete sequence
          Length = 219799

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 433    tcttggatggagcaggagagc 453
              |||||||||||||||||||||
Sbjct: 217409 tcttggatggagcaggagagc 217429
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>gb|AY892993.1| Synthetic construct Homo sapiens clone FLH119683.01L guanylate
           binding protein 5 (GBP5) mRNA, partial cds
          Length = 1761

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 140 cgcagagtcagcaggatcttc 160
           |||||||||||||||||||||
Sbjct: 510 cgcagagtcagcaggatcttc 490
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>gb|AY890530.1| Synthetic construct Homo sapiens clone FLH119687.01X guanylate
           binding protein 5 (GBP5) mRNA, complete cds
          Length = 1761

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 140 cgcagagtcagcaggatcttc 160
           |||||||||||||||||||||
Sbjct: 510 cgcagagtcagcaggatcttc 490
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>dbj|AK129893.1| Homo sapiens cDNA FLJ26383 fis, clone HRT06776, highly similar to
           Complement-activating component of Ra-reactive factor
           precursor (EC 3.4.21.-)
          Length = 1484

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 218 ctgaatcactgggataggagt 238
           |||||||||||||||||||||
Sbjct: 222 ctgaatcactgggataggagt 202
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>dbj|D28593.1|HUMMASP Human mRNA for MASP (mannose-binding protein associated serine
           protease), complete cds
          Length = 2787

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 218 ctgaatcactgggataggagt 238
           |||||||||||||||||||||
Sbjct: 223 ctgaatcactgggataggagt 203
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>dbj|D17525.1| Human mRNA for precursor of P100 serine protease of Ra-reactive
           factor, complete cds
          Length = 4489

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 218 ctgaatcactgggataggagt 238
           |||||||||||||||||||||
Sbjct: 595 ctgaatcactgggataggagt 575
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>dbj|AK090479.1| Homo sapiens mRNA for FLJ00401 protein
          Length = 4699

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 140  cgcagagtcagcaggatcttc 160
            |||||||||||||||||||||
Sbjct: 3759 cgcagagtcagcaggatcttc 3739
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>gb|AC147478.2| Pan troglodytes BAC clone CH251-571L4 from Y, complete sequence
          Length = 188138

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 110   atggatggattaaacatcagaaga 133
             |||||||||||| |||||||||||
Sbjct: 77770 atggatggattagacatcagaaga 77793
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>emb|BX890590.11| Zebrafish DNA sequence from clone DKEY-15H19 in linkage group 3,
             complete sequence
          Length = 141661

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   ggatggattaaacatcagaa 131
             ||||||||||||||||||||
Sbjct: 21209 ggatggattaaacatcagaa 21228
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>gb|AC147131.2| Pan troglodytes BAC clone CH251-403A11 from Y, complete sequence
          Length = 168159

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 110    atggatggattaaacatcagaaga 133
              |||||||||||| |||||||||||
Sbjct: 110057 atggatggattagacatcagaaga 110080
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>gb|AC122305.4| Mus musculus BAC clone RP23-284E19 from 9, complete sequence
          Length = 192434

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 287   aggcttggccttgggcttcctcttcttg 314
             |||||||||||||| |||||| ||||||
Sbjct: 11063 aggcttggccttggccttcctattcttg 11090
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>ref|NM_007648.1| Mus musculus CD3 antigen, epsilon polypeptide (Cd3e), mRNA
          Length = 1438

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 287 aggcttggccttgggcttcctcttcttg 314
           |||||||||||||| |||||| ||||||
Sbjct: 508 aggcttggccttggccttcctattcttg 481
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>gb|AC090711.3| Homo sapiens chromosome 8 clone RP11-89H1 map 8q21-q23, complete
             sequence
          Length = 153053

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    ttccaaacaccaaaagacag 59
             ||||||||||||||||||||
Sbjct: 34956 ttccaaacaccaaaagacag 34937
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>gb|AC083905.20| Homo sapiens 3 BAC RP11-124N24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 109471

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   aggtacttgagcatcttcag 264
             ||||||||||||||||||||
Sbjct: 95510 aggtacttgagcatcttcag 95529
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>emb|AJ720433.1| Gallus gallus mRNA for hypothetical protein, clone 17i18
          Length = 2300

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 295 ccttgggcttcctcttcttg 314
           ||||||||||||||||||||
Sbjct: 83  ccttgggcttcctcttcttg 64
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>ref|NM_001006195.1| Gallus gallus THO complex 5 (THOC5), mRNA
          Length = 2300

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 295 ccttgggcttcctcttcttg 314
           ||||||||||||||||||||
Sbjct: 83  ccttgggcttcctcttcttg 64
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 110     atggatggattaaacatcagaaga 133
               |||||||||||| |||||||||||
Sbjct: 5711039 atggatggattagacatcagaaga 5711062
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>gb|AC087110.3| Homo sapiens chromosome 8, clone CTD-2033B22, complete sequence
          Length = 145544

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    ttccaaacaccaaaagacag 59
             ||||||||||||||||||||
Sbjct: 84787 ttccaaacaccaaaagacag 84806
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>emb|BX666062.6| Zebrafish DNA sequence from clone DKEY-99O18 in linkage group 2, complete
              sequence
          Length = 233488

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     gtaaagtaacagctaaacat 111
              ||||||||||||||||||||
Sbjct: 124125 gtaaagtaacagctaaacat 124144
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>gb|AC155655.8| Mus musculus 6 BAC RP24-66L18 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 203618

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   ctatgccaagtgactgccct 212
             ||||||||||||||||||||
Sbjct: 61171 ctatgccaagtgactgccct 61152
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>ref|XM_236196.2| PREDICTED: Rattus norvegicus CD3 antigen, epsilon polypeptide
           (predicted) (Cd3e_predicted), mRNA
          Length = 723

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 287 aggcttggccttgggcttcctcttcttg 314
           |||||||||||||| |||||| ||||||
Sbjct: 582 aggcttggccttggccttccttttcttg 555
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>gb|AC012150.16|AC012150 Homo sapiens 12 BAC RP11-946L16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 227305

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   tacctcctgaatcactggga 231
             ||||||||||||||||||||
Sbjct: 82117 tacctcctgaatcactggga 82136
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>gb|DQ124694.1| Aeromonas hydrophila FliML (fliML), FliNL (fliNL), FliPL (fliPL), FliQL
             (fliQL), FliRL (fliRL), FlhBL (flhBL), FlhAL (flhAL), LafK
             (lafK), FliEL (fliEL), FliFL (fliFL), FliGL (fliGL), FliHL
             (fliHL), FliIL (fliIL), FliJL (fliJL), FlgNL (flgNL),
             FlgML (flgML), FlgAL (flgAL), FlgBL (flgBL), FlgCL
             (flgCL), FlgDL (flgDL), FlgEL (flgEL), FlgFL (flgFL),
             FlgGL (flgGL), FlgHL (flgHL), FlgIL (flgIL), FlgJL
             (flgJL), FlgKL (flgKL), FlgLL (flgLL), Maf-5 (maf-5),
             lateral flagellin (lafA), flagellar hook associated
             protein 2 (lafB), LafC (lafC), LafX (lafX), flagellar hook
             control length protein (lafE), LafF (lafF), RNA polymerase
             sigma factor (lafS), LafT (lafT), and LafU (lafU) genes,
             complete cds
          Length = 35945

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   ggcgcagagtcagcaggatc 157
             ||||||||||||||||||||
Sbjct: 12443 ggcgcagagtcagcaggatc 12462
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>emb|AL845357.6| Zebrafish DNA sequence from clone DKEY-202M22 in linkage group 20,
             complete sequence
          Length = 221012

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    caacagtacatagaaccagt 93
             ||||||||||||||||||||
Sbjct: 82514 caacagtacatagaaccagt 82495
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>dbj|AK110281.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-E05, full
           insert sequence
          Length = 1363

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 290 cttggccttgggcttcctcttctt 313
           |||||||||||||||| |||||||
Sbjct: 463 cttggccttgggcttcgtcttctt 440
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>emb|AL355103.3|CNS05TCM Human chromosome 14 DNA sequence BAC R-624J12 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173389

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 61     gcaagaagaagttcaacagtacat 84
              |||||||||||| |||||||||||
Sbjct: 142842 gcaagaagaagtccaacagtacat 142819
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>gb|AC125532.3| Mus musculus BAC clone RP23-447C2 from 10, complete sequence
          Length = 182582

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     taatagccactgcaaccaaa 38
              ||||||||||||||||||||
Sbjct: 172972 taatagccactgcaaccaaa 172953
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>emb|AL845367.6| Zebrafish DNA sequence from clone DKEYP-33D4 in linkage group 20,
             complete sequence
          Length = 104646

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    caacagtacatagaaccagt 93
             ||||||||||||||||||||
Sbjct: 26881 caacagtacatagaaccagt 26900
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>gb|AC153971.3| Mus musculus 10 BAC RP24-254O21 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 159743

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    taatagccactgcaaccaaa 38
             ||||||||||||||||||||
Sbjct: 91856 taatagccactgcaaccaaa 91875
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>gb|M23374.1|MUSCD3E5 Mus musculus CD3-epsilon gene, exon 5
          Length = 183

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 287 aggcttggccttgggcttcctcttcttg 314
           |||||||||||||| |||||| ||||||
Sbjct: 140 aggcttggccttggccttcctattcttg 113
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>emb|AL359234.4|CNS05TEL Human chromosome 14 DNA sequence BAC C-2184N20 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 115087

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 61     gcaagaagaagttcaacagtacat 84
              |||||||||||| |||||||||||
Sbjct: 103917 gcaagaagaagtccaacagtacat 103940
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>gb|J02990.1|MUSTCEAA Mouse mRNA for T-cell receptor, T3-epsilon glycoprotein
          Length = 1438

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 287 aggcttggccttgggcttcctcttcttg 314
           |||||||||||||| |||||| ||||||
Sbjct: 508 aggcttggccttggccttcctattcttg 481
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>dbj|AB019489.1| Homo sapiens IDN4-GGTR6 mRNA, partial cds
          Length = 2399

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 40  ttccaaacaccaaaagacag 59
           ||||||||||||||||||||
Sbjct: 230 ttccaaacaccaaaagacag 249


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,154,971
Number of Sequences: 3902068
Number of extensions: 4154971
Number of successful extensions: 78147
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 78034
Number of HSP's gapped (non-prelim): 115
length of query: 471
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 449
effective length of database: 17,147,199,772
effective search space: 7699092697628
effective search space used: 7699092697628
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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