ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart57f05 |
|---|---|
| Clone Library Name | barley_pub |
>14KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor| Length = 137 Score = 57.8 bits (138), Expect = 6e-09 Identities = 26/37 (70%), Positives = 31/37 (83%) Frame = -2 Query: 404 LCTAIKADVLGIHINLPIHLSLILNFCGKGVPTGFMC 294 LCTAIKA++LG ++NLPI LSL+LN CGK VP GF C Sbjct: 100 LCTAIKANILGKNLNLPIALSLVLNNCGKQVPNGFEC 136
>CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor (Root-specific| protein ZRP3) Length = 129 Score = 55.8 bits (133), Expect = 2e-08 Identities = 24/38 (63%), Positives = 30/38 (78%) Frame = -2 Query: 404 LCTAIKADVLGIHINLPIHLSLILNFCGKGVPTGFMCP 291 LCTAIKA+VLGIH+N+P+ L+ ILN CG+ P F CP Sbjct: 91 LCTAIKANVLGIHLNVPLSLNFILNNCGRICPEDFTCP 128
>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein| Length = 346 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/39 (46%), Positives = 26/39 (66%) Frame = -2 Query: 404 LCTAIKADVLGIHINLPIHLSLILNFCGKGVPTGFMCPT 288 LCT I+ +L I+I LPI L ++++ CGK P F CP+ Sbjct: 307 LCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKCPS 345
>HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly m 1)| Length = 80 Score = 34.7 bits (78), Expect = 0.056 Identities = 17/38 (44%), Positives = 23/38 (60%) Frame = -2 Query: 404 LCTAIKADVLGIHINLPIHLSLILNFCGKGVPTGFMCP 291 +C I+ LGI +NL +L LILN CG+ P+ CP Sbjct: 42 VCLCIQLRALGI-LNLNRNLQLILNSCGRSYPSNATCP 78
>GP142_HUMAN (Q7Z601) Probable G-protein coupled receptor 142 (G-protein coupled| receptor PGR2) Length = 462 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Frame = +2 Query: 77 IPSQSKMQW--PLAQATTQTFAKQYKTTKAKQIIERMHALRRNHACMTWT*PLASPFLCG 250 +P + K+QW Q T + T + K ++ HA + H+C++ + L SP + G Sbjct: 6 LPMEQKIQWVPTSLQDITAVLGTEAYTEEDKSMVS--HAQKSQHSCLSHSRWLRSPQVTG 63 Query: 251 RSYD 262 S+D Sbjct: 64 GSWD 67
>KYK1_DICDI (P18160) Non-receptor tyrosine kinase spore lysis A (EC 2.7.10.2)| (Tyrosine-protein kinase 1) Length = 1584 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/50 (32%), Positives = 26/50 (52%) Frame = +1 Query: 22 NN*ENIICHDNNTNNKRTHSIAK*NAMATSTSYDSNVCETIQNN*SKANN 171 NN N ++NN NN ++ N +S + ++N+ T NN S +NN Sbjct: 453 NNNNNNNNNNNNNNNNNNNNNNNNNNSNSSNTNNNNINNTTNNNNSNSNN 502
>CUL2_PONPY (Q5RCF3) Cullin-2 (CUL-2)| Length = 745 Score = 29.3 bits (64), Expect = 2.3 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +2 Query: 101 WPLAQATTQTFAKQYKTTKAKQIIERMHALRRNHACMTW 217 WPL QA + TFA + K+ Q+ E ++ + +TW Sbjct: 517 WPLTQAPSSTFAIPQELEKSVQMFELFYSQHFSGRKLTW 555
>CUL2_MOUSE (Q9D4H8) Cullin-2 (CUL-2)| Length = 745 Score = 29.3 bits (64), Expect = 2.3 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +2 Query: 101 WPLAQATTQTFAKQYKTTKAKQIIERMHALRRNHACMTW 217 WPL QA + TFA + K+ Q+ E ++ + +TW Sbjct: 517 WPLTQAPSSTFAIPQELEKSVQMFELFYSQHFSGRKLTW 555
>CUL2_HUMAN (Q13617) Cullin-2 (CUL-2)| Length = 745 Score = 29.3 bits (64), Expect = 2.3 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +2 Query: 101 WPLAQATTQTFAKQYKTTKAKQIIERMHALRRNHACMTW 217 WPL QA + TFA + K+ Q+ E ++ + +TW Sbjct: 517 WPLTQAPSSTFAIPQELEKSVQMFELFYSQHFSGRKLTW 555
>YL278_YEAST (Q05854) Putative transcriptional regulatory protein YLR278C| Length = 1341 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/58 (24%), Positives = 28/58 (48%) Frame = +1 Query: 46 HDNNTNNKRTHSIAK*NAMATSTSYDSNVCETIQNN*SKANN*TYACTSSKSCMHDMD 219 +DNN NN ++ + N + +SN T N+ + NN Y ++ + +D++ Sbjct: 925 NDNNNNNNNNNNNSNNNNNVNNNDNESNSRSTTNNSCNNGNNSQYVRNNNVTMENDVE 982
>STF1_HORSE (Q9GKL2) Steroidogenic factor 1 (STF-1) (SF-1)| Length = 461 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +1 Query: 166 NN*TYACTSSKSCMHDMDVTSRIPF 240 NN Y CT S+SC D + R PF Sbjct: 43 NNKHYTCTESQSCKIDKTLRKRCPF 67
>C1TC_RAT (P27653) C-1-tetrahydrofolate synthase, cytoplasmic (C1-THF| synthase) [Includes: Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate synthetase (EC 6.3.4.3)] Length = 934 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/29 (58%), Positives = 18/29 (62%), Gaps = 5/29 (17%) Frame = -2 Query: 362 NLPI-----HLSLILNFCGKGVPTGFMCP 291 NLPI HLSL N KGVPTGF+ P Sbjct: 858 NLPICMAKTHLSLSHNPEQKGVPTGFVLP 886
>C1TC_MOUSE (Q922D8) C-1-tetrahydrofolate synthase, cytoplasmic (C1-THF| synthase) [Includes: Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate synthetase (EC 6.3.4.3)] Length = 934 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/29 (58%), Positives = 18/29 (62%), Gaps = 5/29 (17%) Frame = -2 Query: 362 NLPI-----HLSLILNFCGKGVPTGFMCP 291 NLPI HLSL N KGVPTGF+ P Sbjct: 858 NLPICMAKTHLSLSHNPEQKGVPTGFVLP 886
>C1TC_HUMAN (P11586) C-1-tetrahydrofolate synthase, cytoplasmic (C1-THF| synthase) [Includes: Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate synthetase (EC 6.3.4.3)] Length = 934 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/29 (58%), Positives = 18/29 (62%), Gaps = 5/29 (17%) Frame = -2 Query: 362 NLPI-----HLSLILNFCGKGVPTGFMCP 291 NLPI HLSL N KGVPTGF+ P Sbjct: 858 NLPICMAKTHLSLSHNPEQKGVPTGFILP 886
>STF1_PIG (P79387) Steroidogenic factor 1 (STF-1) (SF-1) (Adrenal 4-binding| protein) (Steroid hormone receptor Ad4BP) (Fushi tarazu factor homolog 1) Length = 461 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%) Frame = +1 Query: 118 YDSNVCETIQNN*SKA--NN*TYACTSSKSCMHDMDVTSRIPF 240 Y CET + + NN Y CT S+SC D R PF Sbjct: 25 YGLLTCETCKGFFKRTVQNNKHYTCTESQSCKIDKTQRKRCPF 67
>L_VSVSJ (P03523) Large structural protein (L protein) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2109 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +2 Query: 107 LAQATTQTFAKQYKTTKAKQIIERMHALRR 196 LAQ Q QYKT K++ ++E AL + Sbjct: 710 LAQGDNQVICTQYKTKKSRNVVELQGALNQ 739
>FCGR1_HUMAN (P12314) High affinity immunoglobulin gamma Fc receptor I precursor| (Fc-gamma RI) (FcRI) (IgG Fc receptor I) (CD64 antigen) Length = 374 Score = 28.1 bits (61), Expect = 5.2 Identities = 12/29 (41%), Positives = 14/29 (48%) Frame = +2 Query: 74 HIPSQSKMQWPLAQATTQTFAKQYKTTKA 160 H+P S QW L TQT Y+ T A Sbjct: 47 HLPGSSSTQWFLNGTATQTSTPSYRITSA 75
>NHR22_CAEEL (Q09587) Nuclear hormone receptor family member nhr-22| Length = 579 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/37 (35%), Positives = 17/37 (45%) Frame = -3 Query: 223 SRPCHACMISTKCMHTFNYLLCFSCFVLFRKRLSRSL 113 SR CH C T F C +C FR+ +S S+ Sbjct: 93 SRSCHVCSSPTANTLHFGGRSCKACAAFFRRSVSMSM 129
>STF1_HUMAN (Q13285) Steroidogenic factor 1 (STF-1) (SF-1) (Adrenal 4-binding| protein) (Steroid hormone receptor Ad4BP) (Fushi tarazu factor homolog 1) Length = 461 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +1 Query: 166 NN*TYACTSSKSCMHDMDVTSRIPF 240 NN Y CT S+SC D R PF Sbjct: 43 NNKHYTCTESQSCKIDKTQRKRCPF 67
>STF1_BOVIN (Q04752) Steroidogenic factor 1 (STF-1) (SF-1) (Adrenal 4-binding| protein) (Steroid hormone receptor Ad4BP) (Fushi tarazu factor homolog 1) Length = 461 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +1 Query: 166 NN*TYACTSSKSCMHDMDVTSRIPF 240 NN Y CT S+SC D R PF Sbjct: 43 NNKHYTCTESQSCKIDKTQRKRCPF 67
>YOY6_CAEEL (P34664) Hypothetical protein ZK652.6| Length = 575 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 6/57 (10%) Frame = -3 Query: 247 TKKRGCERSRPCHACMIST------KCMHTFNYLLCFSCFVLFRKRLSRSLC*WPLH 95 T G C C + KC+ +Y LCFSCF +++ P+H Sbjct: 3 TPLTGTHEGVSCDGCAFTAFAGNRYKCLRCSDYDLCFSCFTTKNYGDQQTIADIPIH 59
>KYNU_CAEEL (Q18026) Probable kynureninase (EC 3.7.1.3) (L-kynurenine| hydrolase) Length = 478 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -3 Query: 151 CFVLFRKRLSRSLC*WPLHFTLRWNVSACCWCCYR 47 CFV F L+ + PLH W+V CWC Y+ Sbjct: 258 CFVGFD--LAHAFANVPLHLHW-WDVDFACWCSYK 289
>STF1_RAT (P50569) Steroidogenic factor 1 (STF-1) (SF-1) (Adrenal 4-binding| protein) (Steroid hormone receptor Ad4BP) (Fushi tarazu factor homolog 1) Length = 462 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +1 Query: 166 NN*TYACTSSKSCMHDMDVTSRIPF 240 NN Y CT S+SC D R PF Sbjct: 43 NNKHYTCTESQSCKIDKTQRKRCPF 67
>STF1_MOUSE (P33242) Steroidogenic factor 1 (STF-1) (SF-1) (Adrenal 4-binding| protein) (Steroid hormone receptor Ad4BP) (Fushi tarazu factor homolog 1) (Embryonal LTR-binding protein) (ELP) (Embryonal long terminal repeat-binding protein) (Steroid hydroxy Length = 462 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +1 Query: 166 NN*TYACTSSKSCMHDMDVTSRIPF 240 NN Y CT S+SC D R PF Sbjct: 43 NNKHYTCTESQSCKIDKTQRKRCPF 67
>VE5_RHPV1 (P24834) Probable protein E5| Length = 157 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/45 (28%), Positives = 20/45 (44%) Frame = -3 Query: 232 CERSRPCHACMISTKCMHTFNYLLCFSCFVLFRKRLSRSLC*WPL 98 C+ + C+AC C + CF + F LSR C +P+ Sbjct: 25 CKANCCCYACKPPPFCCFWLCFCCCFCLALCFVHLLSRCFCVFPV 69
>DTN1_CAEEL (Q9Y048) Dystrobrevin-1| Length = 590 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 6/39 (15%) Frame = -3 Query: 214 CHACMIST------KCMHTFNYLLCFSCFVLFRKRLSRS 116 C AC + + KC NY LC SCF +R R S++ Sbjct: 264 CDACQVRSFTGFRYKCQRCANYQLCQSCF--WRGRTSQN 300 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,017,743 Number of Sequences: 219361 Number of extensions: 864550 Number of successful extensions: 2136 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 1981 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2121 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
