ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart57f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY111614.1| Zea mays CL44864_1 mRNA sequence 244 2e-61
2gb|BT019299.1| Zea mays clone Contig972.F mRNA sequence 86 1e-13
3ref|XM_469859.1| Oryza sativa (japonica cultivar-group), mRNA 78 3e-11
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 78 3e-11
5gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genom... 78 3e-11
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
7dbj|AK101534.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
8dbj|AK064205.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 7e-09
9gb|AC166101.4| Mus musculus BAC clone RP23-385P23 from chromosom... 42 1.5
10gb|AC138457.3| Mus musculus BAC clone RP23-358E1 from chromosome... 42 1.5
11gb|AC126429.4| Mus musculus BAC clone RP24-403O23 from chromosom... 42 1.5
12emb|AL160004.18| Human DNA sequence from clone RP5-1068B5 on chr... 42 1.5
13emb|AL139252.8| Human DNA sequence from clone RP4-679K16 on chro... 42 1.5
14dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome 42 1.5
15gb|AY365053.1| Ralstonia eutropha JMP134 plasmid pJP4, complete ... 40 6.1
16gb|AC107725.10| Mus musculus chromosome 5, clone RP23-477O15, co... 40 6.1
17gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 6.1
18gb|AF461013.1| Klebsiella pneumoniae strain M426 MerR, MerT (mer... 40 6.1
19gb|AY333434.1| Salmonella typhimurium plasmid pU302L, complete s... 40 6.1
20ref|XM_422941.1| PREDICTED: Gallus gallus dual specificity phosp... 40 6.1
21ref|XM_323996.1| Neurospora crassa OR74A predicted protein (NCU0... 40 6.1
22ref|NM_013365.3| Homo sapiens golgi associated, gamma adaptin ea... 40 6.1
23ref|NM_001001560.1| Homo sapiens golgi associated, gamma adaptin... 40 6.1
24gb|BC044629.1| Homo sapiens golgi associated, gamma adaptin ear ... 40 6.1
25ref|XM_954091.1| Neurospora crassa OR74A hypothetical protein (N... 40 6.1
26ref|XM_956817.1| Neurospora crassa OR74A hypothetical protein (N... 40 6.1
27ref|XM_324629.1| Neurospora crassa OR74A hypothetical protein (N... 40 6.1
28gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 6.1
29ref|XM_994570.1| PREDICTED: Mus musculus RNA binding motif prote... 40 6.1
30ref|XM_901661.2| PREDICTED: Mus musculus RNA binding motif prote... 40 6.1
31gb|AC073336.6| Homo sapiens BAC clone RP11-476H24 from 7, comple... 40 6.1
32gb|AF071413.3| Assembled sequence of transposon Tn21 containing ... 40 6.1
33gb|CP000355.1| Ralstonia metallidurans CH34 plasmid pMOL28, comp... 40 6.1
34gb|CP000354.1| Ralstonia metallidurans CH34 plasmid pMOL30, comp... 40 6.1
35emb|Y09025.1|ECMERTREL Enterobacter cloacae DNA, mosaic mercury ... 40 6.1
36gb|AC124431.4| Mus musculus BAC clone RP24-243J21 from chromosom... 40 6.1
37emb|Z83844.5|HS37E16 Human DNA sequence from clone RP1-37E16 on ... 40 6.1
38emb|AL390760.25| Human DNA sequence from clone RP11-370F5 on chr... 40 6.1
39gb|CP000093.1| Ralstonia eutropha JMP134 plasmid 1, complete seq... 40 6.1
40gb|AC158217.4| Mus musculus chromosome 5, clone RP24-377B20, com... 40 6.1
41emb|Z00027.1|ISTN501 Transposon Tn501 from Pseudomonas aeruginos... 40 6.1
42emb|Y10102.1|ECTREMER2 Escherichia coli partial merA gene, merD ... 40 6.1
43emb|Y08992.1|EAMMRTRAN E.agglomerans pKLH272 incomplete unit of ... 40 6.1
44emb|X90708.2|AEPARREPG Ralstonia metallidurans CH34 plasmid pMOL28 40 6.1
45emb|X71400.2|AECZCOP5R Ralstonia metallidurans CH34 plasmid pMOL30 40 6.1
46emb|BX664015.1| Serratia marcescens plasmid R478 40 6.1
47emb|AL807371.1|NC5F3 Neurospora crassa DNA linkage group V cosmi... 40 6.1
48emb|AL513383.1|STYPPHCM1 Salmonella enterica subsp. enterica ser... 40 6.1
49emb|AJ564903.1|UBA564903 Uncultured bacterium IncP-1beta multire... 40 6.1
50emb|AJ551280.1|PSP551280 Pseudomonas sp. A19-1 transposon Tn5060 40 6.1
51emb|AJ418049.1|CFR418049 Citrobacter freundii partial merA gene ... 40 6.1
52emb|AJ251540.1|ALW251540 Acinetobacter lwoffii NC7-1 partial mob... 40 6.1
53emb|AJ250010.1|ALW250010 Acinetobacter lwoffii partial mobilizab... 40 6.1
54emb|AJ851089.1| Uncultured bacterium pRSB107 plasmid 40 6.1
55emb|AL110219.1|HSM800873 Homo sapiens mRNA; cDNA DKFZp434A033 (f... 40 6.1
56dbj|AK122898.1| Homo sapiens cDNA FLJ16562 fis, clone SYNOV40052... 40 6.1
57dbj|AK095427.1| Homo sapiens cDNA FLJ38108 fis, clone D3OST20016... 40 6.1
58emb|CR609702.1| full-length cDNA clone CS0DG007YE15 of B cells (... 40 6.1
59dbj|AK092417.1| Homo sapiens cDNA FLJ35098 fis, clone PLACE60062... 40 6.1
60dbj|AK075256.1| Homo sapiens cDNA FLJ90775 fis, clone THYRO10010... 40 6.1
61emb|CR596724.1| full-length cDNA clone CS0DB008YM24 of Neuroblas... 40 6.1
62dbj|AK165277.1| Mus musculus 6 days neonate spleen cDNA, RIKEN f... 40 6.1
63gb|DQ125241.2| Escherichia coli integron In117 IntI1 (intI1), Es... 40 6.1
64gb|AC153923.4| Mus musculus 6 BAC RP23-82I13 (Roswell Park Cance... 40 6.1
65gb|AF348706.1|AF348706 Shigella flexneri large virulence plasmid... 40 6.1
66gb|AF457211.1| Escherichia coli Tn5075, complete sequence 40 6.1
67gb|DQ302790.1| Spiromyces aspiralis isolate AFTOL-ID 185 RNA pol... 40 6.1
68gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.1
69gb|AF190862.1|AF190862 Homo sapiens ADP-ribosylation factor bind... 40 6.1
70gb|AF233521.1|AF233521 Homo sapiens Golgi-associated, gamma-adap... 40 6.1
71gb|AF218584.1|AF218584 Homo sapiens GGA1 mRNA, complete cds 40 6.1
72gb|J01730.1|R1004 Plasmid R100 putative (insA), putative (insB),... 40 6.1
73emb|CR456493.1| Homo sapiens GGA1 full length open reading frame... 40 6.1
74emb|CT025832.1| Acinetobacter baumannii str. AYE. Genomics of Mu... 40 6.1
75gb|AY509004.1| Salmonella enterica subsp. enterica serovar Chole... 40 6.1
76gb|U80214.1|PSU80214 Pseudomonas stutzeri plasmid pPB MerR (merR... 40 6.1
77gb|AC149216.5| Mus musculus BAC clone RP24-194H8 from 18, comple... 40 6.1
78gb|K03089.1|NR1MER Plasmid NR1 mercury resistance (mer) operon 40 6.1
79gb|DQ065837.1| Burkholderia cepacia strain 2a plasmid pIJB1, com... 40 6.1
80emb|AL591433.6| Mouse DNA sequence from clone RP23-268N22 on chr... 40 6.1
81dbj|AP000342.1| Plasmid R100 DNA, complete sequence 40 6.1 
>gb|AY111614.1| Zea mays CL44864_1 mRNA sequence
          Length = 727

 Score =  244 bits (123), Expect = 2e-61
 Identities = 222/255 (87%)
 Strand = Plus / Plus

                                                                       
Query: 199 gggaggtggtaggtgtcgagctgccagtacttctgcttcaccccctcccacacctcctcc 258
           ||||||| ||||||||| || |||||||||||| ||||||| |||| ||| |||||||||
Sbjct: 174 gggaggtagtaggtgtccagttgccagtacttccgcttcacgcccttccagacctcctcc 233

                                                                       
Query: 259 ttgaggcagtccttgacggggagggggatgaactgcgtcgagtacccgaggctcgccagc 318
              ||||| || ||||| || || ||||||||||||||||||||||| ||| |||| |||
Sbjct: 234 gccaggcaatctttgaccggcagagggatgaactgcgtcgagtacccaaggttcgcgagc 293

                                                                       
Query: 319 tccagcgccaccagctggcagtacaccacgtggaagaaggcgctgtcgccgcacagcccg 378
           ||||||||||| |||||||| |||||  |||||||||| ||| |||||||||| || |||
Sbjct: 294 tccagcgccacgagctggcaatacacggcgtggaagaacgcgttgtcgccgcagaggccg 353

                                                                       
Query: 379 ttgaagtaggagtagacgcctccgggcttcagcagctcggggaggtgctcgtggaactcc 438
           |||||||| ||||||| ||||||||||||||||||||  || ||||||| ||||||||| 
Sbjct: 354 ttgaagtacgagtagatgcctccgggcttcagcagcttaggaaggtgctggtggaactct 413

                          
Query: 439 ctcatgtcctcgtag 453
           |||||||||||||||
Sbjct: 414 ctcatgtcctcgtag 428
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>gb|BT019299.1| Zea mays clone Contig972.F mRNA sequence
          Length = 928

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 199/251 (79%)
 Strand = Plus / Plus

                                                                       
Query: 199 gggaggtggtaggtgtcgagctgccagtacttctgcttcaccccctcccacacctcctcc 258
           ||||||| ||||| |||  | |||||||||||| |||||||||||| ||| |||||||||
Sbjct: 435 gggaggtagtaggggtcccgttgccagtacttccgcttcacccccttccaaacctcctcc 494

                                                                       
Query: 259 ttgaggcagtccttgacggggagggggatgaactgcgtcgagtacccgaggctcgccagc 318
              ||| | |  ||||| ||||  ||||||||||||||||||||||| ||| || | |||
Sbjct: 495 gccagggaatttttgaccgggaaagggatgaactgcgtcgagtacccaaggttcccgagc 554

                                                                       
Query: 319 tccagcgccaccagctggcagtacaccacgtggaagaaggcgctgtcgccgcacagcccg 378
           ||| |||| || || ||||| |||||   |||||| ||  || |||| || || |  |||
Sbjct: 555 tcccgcgcgacgaggtggcaatacacggggtggaaaaacccgttgtccccccaaaagccg 614

                                                                       
Query: 379 ttgaagtaggagtagacgcctccgggcttcagcagctcggggaggtgctcgtggaactcc 438
           ||||| ||  | || | ||||||||||||||||||||  || ||| ||| | ||||||| 
Sbjct: 615 ttgaaataccaataaatgcctccgggcttcagcagcttcggaaggggctgggggaactct 674

                      
Query: 439 ctcatgtcctc 449
           |||||||||||
Sbjct: 675 ctcatgtcctc 685
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>ref|XM_469859.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1008

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 222/283 (78%)
 Strand = Plus / Minus

                                                                        
Query: 171  ctccgattcagaatctgcctggcagacggggaggtggtaggtgtcgagctgccagtactt 230
            ||||| ||| || ||||| ||||| || ||||||||||| || || |  |||||||| ||
Sbjct: 1002 ctccggttctgattctgcttggcaaactgggaggtggtaagtatccaattgccagtattt 943

                                                                        
Query: 231  ctgcttcaccccctcccacacctcctccttgaggcagtccttgacggggagggggatgaa 290
            |||||||||||| | ||| |  |||||    || || || ||||| ||||| ||||||||
Sbjct: 942  ctgcttcaccccattccatatttcctctgaaagacaatctttgactgggagcgggatgaa 883

                                                                        
Query: 291  ctgcgtcgagtacccgaggctcgccagctccagcgccaccagctggcagtacaccacgtg 350
            ||| |||||||| || ||  | |||| ||| | ||| || |||||||| ||||| |||||
Sbjct: 882  ctgtgtcgagtagccaagatttgccaactctaacgctacgagctggcaatacacaacgtg 823

                                                                        
Query: 351  gaagaaggcgctgtcgccgcacagcccgttgaagtaggagtagacgcctccgggcttcag 410
            |||||||||  | ||||| || || || ||||| || |||||||  ||||| ||||||| 
Sbjct: 822  gaagaaggcattatcgccacagaggccattgaaatacgagtagatccctccaggcttcaa 763

                                                       
Query: 411  cagctcggggaggtgctcgtggaactccctcatgtcctcgtag 453
             ||||  || || || | ||||||||| ||||| |||||||||
Sbjct: 762  tagcttaggaagatgttggtggaactctctcatatcctcgtag 720
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 222/283 (78%)
 Strand = Plus / Plus

                                                                            
Query: 171      ctccgattcagaatctgcctggcagacggggaggtggtaggtgtcgagctgccagtactt 230
                ||||| ||| || ||||| ||||| || ||||||||||| || || |  |||||||| ||
Sbjct: 31172777 ctccggttctgattctgcttggcaaactgggaggtggtaagtatccaattgccagtattt 31172836

                                                                            
Query: 231      ctgcttcaccccctcccacacctcctccttgaggcagtccttgacggggagggggatgaa 290
                |||||||||||| | ||| |  |||||    || || || ||||| ||||| ||||||||
Sbjct: 31172837 ctgcttcaccccattccatatttcctctgaaagacaatctttgactgggagcgggatgaa 31172896

                                                                            
Query: 291      ctgcgtcgagtacccgaggctcgccagctccagcgccaccagctggcagtacaccacgtg 350
                ||| |||||||| || ||  | |||| ||| | ||| || |||||||| ||||| |||||
Sbjct: 31172897 ctgtgtcgagtagccaagatttgccaactctaacgctacgagctggcaatacacaacgtg 31172956

                                                                            
Query: 351      gaagaaggcgctgtcgccgcacagcccgttgaagtaggagtagacgcctccgggcttcag 410
                |||||||||  | ||||| || || || ||||| || |||||||  ||||| ||||||| 
Sbjct: 31172957 gaagaaggcattatcgccacagaggccattgaaatacgagtagatccctccaggcttcaa 31173016

                                                           
Query: 411      cagctcggggaggtgctcgtggaactccctcatgtcctcgtag 453
                 ||||  || || || | ||||||||| ||||| |||||||||
Sbjct: 31173017 tagcttaggaagatgttggtggaactctctcatatcctcgtag 31173059
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>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete
             sequence
          Length = 128017

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 222/283 (78%)
 Strand = Plus / Plus

                                                                         
Query: 171   ctccgattcagaatctgcctggcagacggggaggtggtaggtgtcgagctgccagtactt 230
             ||||| ||| || ||||| ||||| || ||||||||||| || || |  |||||||| ||
Sbjct: 93418 ctccggttctgattctgcttggcaaactgggaggtggtaagtatccaattgccagtattt 93477

                                                                         
Query: 231   ctgcttcaccccctcccacacctcctccttgaggcagtccttgacggggagggggatgaa 290
             |||||||||||| | ||| |  |||||    || || || ||||| ||||| ||||||||
Sbjct: 93478 ctgcttcaccccattccatatttcctctgaaagacaatctttgactgggagcgggatgaa 93537

                                                                         
Query: 291   ctgcgtcgagtacccgaggctcgccagctccagcgccaccagctggcagtacaccacgtg 350
             ||| |||||||| || ||  | |||| ||| | ||| || |||||||| ||||| |||||
Sbjct: 93538 ctgtgtcgagtagccaagatttgccaactctaacgctacgagctggcaatacacaacgtg 93597

                                                                         
Query: 351   gaagaaggcgctgtcgccgcacagcccgttgaagtaggagtagacgcctccgggcttcag 410
             |||||||||  | ||||| || || || ||||| || |||||||  ||||| ||||||| 
Sbjct: 93598 gaagaaggcattatcgccacagaggccattgaaatacgagtagatccctccaggcttcaa 93657

                                                        
Query: 411   cagctcggggaggtgctcgtggaactccctcatgtcctcgtag 453
              ||||  || || || | ||||||||| ||||| |||||||||
Sbjct: 93658 tagcttaggaagatgttggtggaactctctcatatcctcgtag 93700
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 222/283 (78%)
 Strand = Plus / Plus

                                                                            
Query: 171      ctccgattcagaatctgcctggcagacggggaggtggtaggtgtcgagctgccagtactt 230
                ||||| ||| || ||||| ||||| || ||||||||||| || || |  |||||||| ||
Sbjct: 31263300 ctccggttctgattctgcttggcaaactgggaggtggtaagtatccaattgccagtattt 31263359

                                                                            
Query: 231      ctgcttcaccccctcccacacctcctccttgaggcagtccttgacggggagggggatgaa 290
                |||||||||||| | ||| |  |||||    || || || ||||| ||||| ||||||||
Sbjct: 31263360 ctgcttcaccccattccatatttcctctgaaagacaatctttgactgggagcgggatgaa 31263419

                                                                            
Query: 291      ctgcgtcgagtacccgaggctcgccagctccagcgccaccagctggcagtacaccacgtg 350
                ||| |||||||| || ||  | |||| ||| | ||| || |||||||| ||||| |||||
Sbjct: 31263420 ctgtgtcgagtagccaagatttgccaactctaacgctacgagctggcaatacacaacgtg 31263479

                                                                            
Query: 351      gaagaaggcgctgtcgccgcacagcccgttgaagtaggagtagacgcctccgggcttcag 410
                |||||||||  | ||||| || || || ||||| || |||||||  ||||| ||||||| 
Sbjct: 31263480 gaagaaggcattatcgccacagaggccattgaaatacgagtagatccctccaggcttcaa 31263539

                                                           
Query: 411      cagctcggggaggtgctcgtggaactccctcatgtcctcgtag 453
                 ||||  || || || | ||||||||| ||||| |||||||||
Sbjct: 31263540 tagcttaggaagatgttggtggaactctctcatatcctcgtag 31263582
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>dbj|AK101534.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048C14, full
            insert sequence
          Length = 1492

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 222/283 (78%)
 Strand = Plus / Minus

                                                                        
Query: 171  ctccgattcagaatctgcctggcagacggggaggtggtaggtgtcgagctgccagtactt 230
            ||||| ||| || ||||| ||||| || ||||||||||| || || |  |||||||| ||
Sbjct: 1034 ctccggttctgattctgcttggcaaactgggaggtggtaagtatccaattgccagtattt 975

                                                                        
Query: 231  ctgcttcaccccctcccacacctcctccttgaggcagtccttgacggggagggggatgaa 290
            |||||||||||| | ||| |  |||||    || || || ||||| ||||| ||||||||
Sbjct: 974  ctgcttcaccccattccatatttcctctgaaagacaatctttgactgggagcgggatgaa 915

                                                                        
Query: 291  ctgcgtcgagtacccgaggctcgccagctccagcgccaccagctggcagtacaccacgtg 350
            ||| |||||||| || ||  | |||| ||| | ||| || |||||||| ||||| |||||
Sbjct: 914  ctgtgtcgagtagccaagatttgccaactctaacgctacgagctggcaatacacaacgtg 855

                                                                        
Query: 351  gaagaaggcgctgtcgccgcacagcccgttgaagtaggagtagacgcctccgggcttcag 410
            |||||||||  | ||||| || || || ||||| || |||||||  ||||| ||||||| 
Sbjct: 854  gaagaaggcattatcgccacagaggccattgaaatacgagtagatccctccaggcttcaa 795

                                                       
Query: 411  cagctcggggaggtgctcgtggaactccctcatgtcctcgtag 453
             ||||  || || || | ||||||||| ||||| |||||||||
Sbjct: 794  tagcttaggaagatgttggtggaactctctcatatcctcgtag 752
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>dbj|AK064205.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-E04, full
            insert sequence
          Length = 1473

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 188/239 (78%)
 Strand = Plus / Minus

                                                                        
Query: 171  ctccgattcagaatctgcctggcagacggggaggtggtaggtgtcgagctgccagtactt 230
            ||||| ||| || ||||| ||||| || ||||||||||| || || |  |||||||| ||
Sbjct: 1021 ctccggttctgattctgcttggcaaactgggaggtggtaagtatccaattgccagtattt 962

                                                                        
Query: 231  ctgcttcaccccctcccacacctcctccttgaggcagtccttgacggggagggggatgaa 290
            |||||||||||| | ||| |  |||||    || || || ||||| ||||| ||||||||
Sbjct: 961  ctgcttcaccccattccatatttcctctgaaagacaatctttgactgggagcgggatgaa 902

                                                                        
Query: 291  ctgcgtcgagtacccgaggctcgccagctccagcgccaccagctggcagtacaccacgtg 350
            ||| |||||||| || ||  | |||| ||| | ||| || |||||||| ||||| |||||
Sbjct: 901  ctgtgtcgagtagccaagatttgccaactctaacgctacgagctggcaatacacaacgtg 842

                                                                       
Query: 351  gaagaaggcgctgtcgccgcacagcccgttgaagtaggagtagacgcctccgggcttca 409
            |||||||||  | ||||| || || || ||||| || |||||||  ||||| |||||||
Sbjct: 841  gaagaaggcattatcgccacagaggccattgaaatacgagtagatccctccaggcttca 783
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>gb|AC166101.4| Mus musculus BAC clone RP23-385P23 from chromosome 6, complete sequence
          Length = 223116

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 236   tcaccccctcccacacctcct 256
             |||||||||||||||||||||
Sbjct: 17269 tcaccccctcccacacctcct 17249
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>gb|AC138457.3| Mus musculus BAC clone RP23-358E1 from chromosome 19, complete sequence
          Length = 237854

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 245    cccacacctcctccttgaggcagtc 269
              ||||| |||||||||||||||||||
Sbjct: 121910 cccacccctcctccttgaggcagtc 121934
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>gb|AC126429.4| Mus musculus BAC clone RP24-403O23 from chromosome 6, complete sequence
          Length = 152532

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 236   tcaccccctcccacacctcct 256
             |||||||||||||||||||||
Sbjct: 58063 tcaccccctcccacacctcct 58083
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>emb|AL160004.18| Human DNA sequence from clone RP5-1068B5 on chromosome 1q42.11-43
             Contains a pseudogene similar to part of ribosomal protein
             L21 (RPL21), the ACTA1 gene for actin, alpha 1, skeletal
             muscle, the 3' end of the NUP133 gene for nucleoporin
             133kDa and two CpG islands, complete sequence
          Length = 86173

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 236   tcaccccctcccacacctcct 256
             |||||||||||||||||||||
Sbjct: 84567 tcaccccctcccacacctcct 84547
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>emb|AL139252.8| Human DNA sequence from clone RP4-679K16 on chromosome 1q42.13-43
           Contains part of the NUP133 gene for nucleoporin 133kDa,
           complete sequence
          Length = 25069

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 236 tcaccccctcccacacctcct 256
           |||||||||||||||||||||
Sbjct: 394 tcaccccctcccacacctcct 374
to top
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome
          Length = 1669695

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 242    cctcccacacctcctccttga 262
              |||||||||||||||||||||
Sbjct: 799505 cctcccacacctcctccttga 799485
to top
>gb|AY365053.1| Ralstonia eutropha JMP134 plasmid pJP4, complete sequence
          Length = 87688

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   cgccagctccagcgccacca 331
             ||||||||||||||||||||
Sbjct: 53541 cgccagctccagcgccacca 53560
to top
>gb|AC107725.10| Mus musculus chromosome 5, clone RP23-477O15, complete sequence
          Length = 169321

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 239   ccccctcccacacctcctcc 258
             ||||||||||||||||||||
Sbjct: 67192 ccccctcccacacctcctcc 67173
to top
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 409     agcagctcggggaggtgctc 428
               ||||||||||||||||||||
Sbjct: 3370728 agcagctcggggaggtgctc 3370709
to top
>gb|AF461013.1| Klebsiella pneumoniae strain M426 MerR, MerT (merT), MerP (merP),
            MerC (merC), MerA (merA), MerD (merD), and URF-1 genes,
            complete cds
          Length = 4256

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  cgccagctccagcgccacca 331
            ||||||||||||||||||||
Sbjct: 2611 cgccagctccagcgccacca 2592
to top
>gb|AY333434.1| Salmonella typhimurium plasmid pU302L, complete sequence
          Length = 84514

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   cgccagctccagcgccacca 331
             ||||||||||||||||||||
Sbjct: 68016 cgccagctccagcgccacca 67997
to top
>ref|XM_422941.1| PREDICTED: Gallus gallus dual specificity phosphatase 1 (DUSP1), mRNA
          Length = 1850

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 406  ttcagcagctcggggaggtg 425
            ||||||||||||||||||||
Sbjct: 1202 ttcagcagctcggggaggtg 1183
to top
>ref|XM_323996.1| Neurospora crassa OR74A predicted protein (NCU04641.1) partial mRNA
          Length = 1674

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 239 ccccctcccacacctcctcc 258
           ||||||||||||||||||||
Sbjct: 574 ccccctcccacacctcctcc 555
to top
>ref|NM_013365.3| Homo sapiens golgi associated, gamma adaptin ear containing, ARF
            binding protein 1 (GGA1), transcript variant 1, mRNA
          Length = 3163

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  ccagctccagcgccaccagc 333
            ||||||||||||||||||||
Sbjct: 1768 ccagctccagcgccaccagc 1787
to top
>ref|NM_001001560.1| Homo sapiens golgi associated, gamma adaptin ear containing, ARF
            binding protein 1 (GGA1), transcript variant 2, mRNA
          Length = 2898

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  ccagctccagcgccaccagc 333
            ||||||||||||||||||||
Sbjct: 1507 ccagctccagcgccaccagc 1526
to top
>gb|BC044629.1| Homo sapiens golgi associated, gamma adaptin ear containing, ARF
            binding protein 1, transcript variant 2, mRNA (cDNA clone
            MGC:52130 IMAGE:5796877), complete cds
          Length = 2545

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  ccagctccagcgccaccagc 333
            ||||||||||||||||||||
Sbjct: 1158 ccagctccagcgccaccagc 1177
to top
>ref|XM_954091.1| Neurospora crassa OR74A hypothetical protein (NCU04641.1) partial
           mRNA
          Length = 1674

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 239 ccccctcccacacctcctcc 258
           ||||||||||||||||||||
Sbjct: 574 ccccctcccacacctcctcc 555
to top
>ref|XM_956817.1| Neurospora crassa OR74A hypothetical protein (NCU05273.1) partial
           mRNA
          Length = 1935

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 252 ctcctccttgaggcagtcct 271
           ||||||||||||||||||||
Sbjct: 216 ctcctccttgaggcagtcct 235
to top
>ref|XM_324629.1| Neurospora crassa OR74A hypothetical protein (NCU05273.1) partial
           mRNA
          Length = 1935

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 252 ctcctccttgaggcagtcct 271
           ||||||||||||||||||||
Sbjct: 216 ctcctccttgaggcagtcct 235
to top
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 312     cgccagctccagcgccacca 331
               ||||||||||||||||||||
Sbjct: 6164233 cgccagctccagcgccacca 6164214



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 356     aggcgctgtcgccgcacagc 375
               ||||||||||||||||||||
Sbjct: 1966056 aggcgctgtcgccgcacagc 1966037
to top
>ref|XM_994570.1| PREDICTED: Mus musculus RNA binding motif protein 22, transcript
            variant 1 (Rbm22), mRNA
          Length = 3717

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 228  cttctgcttcaccccctccc 247
            ||||||||||||||||||||
Sbjct: 3320 cttctgcttcaccccctccc 3301
to top
>ref|XM_901661.2| PREDICTED: Mus musculus RNA binding motif protein 22, transcript
            variant 3 (Rbm22), mRNA
          Length = 3717

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 228  cttctgcttcaccccctccc 247
            ||||||||||||||||||||
Sbjct: 3320 cttctgcttcaccccctccc 3301
to top
>gb|AC073336.6| Homo sapiens BAC clone RP11-476H24 from 7, complete sequence
          Length = 166261

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    ccctcccacacctcctcctt 260
              ||||||||||||||||||||
Sbjct: 122380 ccctcccacacctcctcctt 122399
to top
>gb|AF071413.3| Assembled sequence of transposon Tn21 containing transposition genes,
             the integron In2, and the mercury resistance operon
          Length = 19672

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   cgccagctccagcgccacca 331
             ||||||||||||||||||||
Sbjct: 17130 cgccagctccagcgccacca 17149
to top
>gb|CP000355.1| Ralstonia metallidurans CH34 plasmid pMOL28, complete sequence
          Length = 171459

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 312 cgccagctccagcgccacca 331
           ||||||||||||||||||||
Sbjct: 976 cgccagctccagcgccacca 957
to top
>gb|CP000354.1| Ralstonia metallidurans CH34 plasmid pMOL30, complete sequence
          Length = 233720

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    cgccagctccagcgccacca 331
              ||||||||||||||||||||
Sbjct: 224821 cgccagctccagcgccacca 224802
to top
>emb|Y09025.1|ECMERTREL Enterobacter cloacae DNA, mosaic mercury resistance transposable
            element (mer-operon)
          Length = 8012

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  cgccagctccagcgccacca 331
            ||||||||||||||||||||
Sbjct: 2596 cgccagctccagcgccacca 2577
to top
>gb|AC124431.4| Mus musculus BAC clone RP24-243J21 from chromosome 18, complete
             sequence
          Length = 143099

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   tcaccccctcccacacctcc 255
             ||||||||||||||||||||
Sbjct: 72280 tcaccccctcccacacctcc 72261
to top
>emb|Z83844.5|HS37E16 Human DNA sequence from clone RP1-37E16 on chromosome 22 Contains the
            3' part of the gene for a novel VHS domain containing
            protein similar to predicted worm and human proteins, the
            SH3BP1 gene for SH3-domain binding protein 1, the gene
            for a novel protein similar to nitrophenylphosphatases
            from various organisms, the LGALS1 gene for soluble
            galactoside-binding lectin 1, a novel gene and the gene
            for a novel protein similar to mouse RIP3 (P116
            Rho-interacting protein) and rat RB109, complete sequence
          Length = 166181

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  ccagctccagcgccaccagc 333
            ||||||||||||||||||||
Sbjct: 4924 ccagctccagcgccaccagc 4943
to top
>emb|AL390760.25| Human DNA sequence from clone RP11-370F5 on chromosome 9 Contains the 3'
              emd of novel gene (MGC11115), the NINJ1 gene for ninjurin
              1, a novel gene, the 5' end of the PRKWNK2 gene for protein
              kinase, lysine deficient 2 (WNK2, NY-CO-43, SDCCAG43,
              P/OKcl.13) and two CpG islands, complete sequence
          Length = 175797

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    cccacacctcctccttgagg 264
              ||||||||||||||||||||
Sbjct: 137798 cccacacctcctccttgagg 137779
to top
>gb|CP000093.1| Ralstonia eutropha JMP134 plasmid 1, complete sequence
          Length = 87688

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   cgccagctccagcgccacca 331
             ||||||||||||||||||||
Sbjct: 53541 cgccagctccagcgccacca 53560
to top
>gb|AC158217.4| Mus musculus chromosome 5, clone RP24-377B20, complete sequence
          Length = 160008

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   ccccctcccacacctcctcc 258
             ||||||||||||||||||||
Sbjct: 25728 ccccctcccacacctcctcc 25747
to top
>emb|Z00027.1|ISTN501 Transposon Tn501 from Pseudomonas aeruginosa plasmid pVS1 encoding
            mercuric ion resistance determinant. Genes: merR
            (regulation), merT and merP (transport), merA
            (reductase), merD (not known); two open reading frames of
            unknown function (possibly one is merE); res site, tnpR
            and tnpA (transposition)
          Length = 8355

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  cgccagctccagcgccacca 331
            ||||||||||||||||||||
Sbjct: 2187 cgccagctccagcgccacca 2168
to top
>emb|Y10102.1|ECTREMER2 Escherichia coli partial merA gene, merD gene and 3 ORF's
          Length = 3624

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 312 cgccagctccagcgccacca 331
           ||||||||||||||||||||
Sbjct: 273 cgccagctccagcgccacca 254
to top
>emb|Y08992.1|EAMMRTRAN E.agglomerans pKLH272 incomplete unit of mosaic mercury resistance
            transposon
          Length = 4824

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  cgccagctccagcgccacca 331
            ||||||||||||||||||||
Sbjct: 2712 cgccagctccagcgccacca 2693
to top
>emb|X90708.2|AEPARREPG Ralstonia metallidurans CH34 plasmid pMOL28
          Length = 171461

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 312    cgccagctccagcgccacca 331
              ||||||||||||||||||||
Sbjct: 143760 cgccagctccagcgccacca 143779
to top
>emb|X71400.2|AECZCOP5R Ralstonia metallidurans CH34 plasmid pMOL30
          Length = 233755

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 312    cgccagctccagcgccacca 331
              ||||||||||||||||||||
Sbjct: 128751 cgccagctccagcgccacca 128770
to top
>emb|BX664015.1| Serratia marcescens plasmid R478
          Length = 274762

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 312    cgccagctccagcgccacca 331
              ||||||||||||||||||||
Sbjct: 107530 cgccagctccagcgccacca 107549
to top
>emb|AL807371.1|NC5F3 Neurospora crassa DNA linkage group V cosmid contig 5F3
          Length = 83192

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 239   ccccctcccacacctcctcc 258
             ||||||||||||||||||||
Sbjct: 36001 ccccctcccacacctcctcc 35982
to top
>emb|AL513383.1|STYPPHCM1 Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1
          Length = 218160

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 312    cgccagctccagcgccacca 331
              ||||||||||||||||||||
Sbjct: 172815 cgccagctccagcgccacca 172834



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    cgccagctccagcgccacca 331
              ||||||||||||||||||||
Sbjct: 117063 cgccagctccagcgccacca 117044
to top
>emb|AJ564903.1|UBA564903 Uncultured bacterium IncP-1beta multiresistance plasmid pB10
          Length = 64508

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   cgccagctccagcgccacca 331
             ||||||||||||||||||||
Sbjct: 60697 cgccagctccagcgccacca 60716
to top
>emb|AJ551280.1|PSP551280 Pseudomonas sp. A19-1 transposon Tn5060
          Length = 8667

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 312  cgccagctccagcgccacca 331
            ||||||||||||||||||||
Sbjct: 6125 cgccagctccagcgccacca 6144
to top
>emb|AJ418049.1|CFR418049 Citrobacter freundii partial merA gene for putative mercuric
           reductase
          Length = 1144

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 312 cgccagctccagcgccacca 331
           ||||||||||||||||||||
Sbjct: 420 cgccagctccagcgccacca 401
to top
>emb|AJ251540.1|ALW251540 Acinetobacter lwoffii NC7-1 partial mobilizable plasmid pKLH103
           including pKLH1-like transposon merA-D region
          Length = 1686

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 312 cgccagctccagcgccacca 331
           ||||||||||||||||||||
Sbjct: 168 cgccagctccagcgccacca 149
to top
>emb|AJ250010.1|ALW250010 Acinetobacter lwoffii partial mobilizable plasmid pKLH102 including
           pKLH1-like transposon merA gene (partial), strain TC41-3
          Length = 661

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 312 cgccagctccagcgccacca 331
           ||||||||||||||||||||
Sbjct: 68  cgccagctccagcgccacca 49
to top
>emb|AJ851089.1| Uncultured bacterium pRSB107 plasmid
          Length = 120592

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   cgccagctccagcgccacca 331
             ||||||||||||||||||||
Sbjct: 31367 cgccagctccagcgccacca 31348
to top
>emb|AL110219.1|HSM800873 Homo sapiens mRNA; cDNA DKFZp434A033 (from clone DKFZp434A033)
          Length = 2709

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  ccagctccagcgccaccagc 333
            ||||||||||||||||||||
Sbjct: 1314 ccagctccagcgccaccagc 1333
to top
>dbj|AK122898.1| Homo sapiens cDNA FLJ16562 fis, clone SYNOV4005256, highly  similar
            to ADP-ribosylation factor binding protein GGA1
          Length = 3205

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  ccagctccagcgccaccagc 333
            ||||||||||||||||||||
Sbjct: 1836 ccagctccagcgccaccagc 1855
to top
>dbj|AK095427.1| Homo sapiens cDNA FLJ38108 fis, clone D3OST2001670, highly similar
           to ADP-ribosylation factor binding protein GGA1
          Length = 2049

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 314 ccagctccagcgccaccagc 333
           ||||||||||||||||||||
Sbjct: 680 ccagctccagcgccaccagc 699
to top
>emb|CR609702.1| full-length cDNA clone CS0DG007YE15 of B cells (Ramos cell line) of
            Homo sapiens (human)
          Length = 2735

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  ccagctccagcgccaccagc 333
            ||||||||||||||||||||
Sbjct: 1426 ccagctccagcgccaccagc 1445
to top
>dbj|AK092417.1| Homo sapiens cDNA FLJ35098 fis, clone PLACE6006266, highly similar
           to ADP-ribosylation factor binding protein GGA1
          Length = 1806

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 314 ccagctccagcgccaccagc 333
           ||||||||||||||||||||
Sbjct: 437 ccagctccagcgccaccagc 456
to top
>dbj|AK075256.1| Homo sapiens cDNA FLJ90775 fis, clone THYRO1001071, highly similar to
            ADP-ribosylation factor binding protein GGA1
          Length = 3139

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  ccagctccagcgccaccagc 333
            ||||||||||||||||||||
Sbjct: 1768 ccagctccagcgccaccagc 1787
to top
>emb|CR596724.1| full-length cDNA clone CS0DB008YM24 of Neuroblastoma Cot
           10-normalized of Homo sapiens (human)
          Length = 2058

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 314 ccagctccagcgccaccagc 333
           ||||||||||||||||||||
Sbjct: 716 ccagctccagcgccaccagc 735
to top
>dbj|AK165277.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched
            library, clone:F430008C17 product:hypothetical Zn-finger,
            C-x8-C-x5-C-x3-H type containing protein, full insert
            sequence
          Length = 3542

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 228  cttctgcttcaccccctccc 247
            ||||||||||||||||||||
Sbjct: 3289 cttctgcttcaccccctccc 3270
to top
>gb|DQ125241.2| Escherichia coli integron In117 IntI1 (intI1), EstX (estX), AadA1
             (aadA1), QacEdelta1 (qacEdelta1), Sul1 (sul1), putative
             recombinase, beta lactamase CTX-M-2 (blaCTX-M-2),
             ORF3-QacEdelta1 fusion protein, Sul1 (sul1), IstB (istB),
             IstA (istA), TniBdelta1 (tniBdelta1), TniA (tniA), unknown
             (merE), MerD (merD), MerA (merA), MerC (merC), MerP
             (merP), and MerT (merT) genes, complete cds, and unknown
             genes
          Length = 20032

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   cgccagctccagcgccacca 331
             ||||||||||||||||||||
Sbjct: 17947 cgccagctccagcgccacca 17966
to top
>gb|AC153923.4| Mus musculus 6 BAC RP23-82I13 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 248275

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 237    caccccctcccacacctcct 256
              ||||||||||||||||||||
Sbjct: 147298 caccccctcccacacctcct 147317
to top
>gb|AF348706.1|AF348706 Shigella flexneri large virulence plasmid pWR501, complete plasmid
              sequence
          Length = 221851

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    cgccagctccagcgccacca 331
              ||||||||||||||||||||
Sbjct: 200899 cgccagctccagcgccacca 200880
to top
>gb|AF457211.1| Escherichia coli Tn5075, complete sequence
          Length = 11298

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  cgccagctccagcgccacca 331
            ||||||||||||||||||||
Sbjct: 3870 cgccagctccagcgccacca 3851
to top
>gb|DQ302790.1| Spiromyces aspiralis isolate AFTOL-ID 185 RNA polymerase II second
           largest subunit precursor (RPB2) gene, partial cds
          Length = 3174

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 37  ggcgtgacctgatcctgaac 56
           ||||||||||||||||||||
Sbjct: 971 ggcgtgacctgatcctgaac 952
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 215     cgagctgccagtacttctgc 234
               ||||||||||||||||||||
Sbjct: 4145938 cgagctgccagtacttctgc 4145919
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>gb|AF190862.1|AF190862 Homo sapiens ADP-ribosylation factor binding protein GGA1 (GGA1)
            mRNA, complete cds
          Length = 2800

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  ccagctccagcgccaccagc 333
            ||||||||||||||||||||
Sbjct: 1418 ccagctccagcgccaccagc 1437
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>gb|AF233521.1|AF233521 Homo sapiens Golgi-associated, gamma-adaptin ear containing,
            ARF-binding protein 1 (GGA1) gene, complete cds
          Length = 2040

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  ccagctccagcgccaccagc 333
            ||||||||||||||||||||
Sbjct: 1425 ccagctccagcgccaccagc 1444
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>gb|AF218584.1|AF218584 Homo sapiens GGA1 mRNA, complete cds
          Length = 1924

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  ccagctccagcgccaccagc 333
            ||||||||||||||||||||
Sbjct: 1407 ccagctccagcgccaccagc 1426
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>gb|J01730.1|R1004 Plasmid R100 putative (insA), putative (insB), merR (merR), putative
            (merT), merC (merC), mercuric reductase (merA), and
            putative (merD) genes, complete cds
          Length = 5747

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  cgccagctccagcgccacca 331
            ||||||||||||||||||||
Sbjct: 3471 cgccagctccagcgccacca 3452
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>emb|CR456493.1| Homo sapiens GGA1 full length open reading frame (ORF) cDNA clone
            (cDNA clone C22ORF:pGEM.GGA1)
          Length = 2196

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  ccagctccagcgccaccagc 333
            ||||||||||||||||||||
Sbjct: 1590 ccagctccagcgccaccagc 1609
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>emb|CT025832.1| Acinetobacter baumannii str. AYE. Genomics of Multi-Drug Resistance in
             Acinetobacter baumannii
          Length = 100001

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   cgccagctccagcgccacca 331
             ||||||||||||||||||||
Sbjct: 56013 cgccagctccagcgccacca 56032
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>gb|AY509004.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
             plasmid pSC138, complete sequence
          Length = 138742

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   cgccagctccagcgccacca 331
             ||||||||||||||||||||
Sbjct: 16696 cgccagctccagcgccacca 16677
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>gb|U80214.1|PSU80214 Pseudomonas stutzeri plasmid pPB MerR (merR), MerT (merT), MerP
            (merP), MerA (merA), MerD (merD), Urf1 (urf1), Urf2
            (urf2), delta-tniA-like protein, and DNA-invertase genes,
            complete cds; and delta-tniR pseudogene, complete
            sequence
          Length = 6769

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  cgccagctccagcgccacca 331
            ||||||||||||||||||||
Sbjct: 2222 cgccagctccagcgccacca 2203
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>gb|AC149216.5| Mus musculus BAC clone RP24-194H8 from 18, complete sequence
          Length = 193186

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    cttctgcttcaccccctccc 247
              ||||||||||||||||||||
Sbjct: 174108 cttctgcttcaccccctccc 174127
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>gb|K03089.1|NR1MER Plasmid NR1 mercury resistance (mer) operon
          Length = 3763

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  cgccagctccagcgccacca 331
            ||||||||||||||||||||
Sbjct: 2607 cgccagctccagcgccacca 2588
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>gb|DQ065837.1| Burkholderia cepacia strain 2a plasmid pIJB1, complete sequence
          Length = 99448

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   cgccagctccagcgccacca 331
             ||||||||||||||||||||
Sbjct: 24565 cgccagctccagcgccacca 24584
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>emb|AL591433.6| Mouse DNA sequence from clone RP23-268N22 on chromosome 11, complete
              sequence
          Length = 203336

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     atcaggcaggcaggcgtgac 44
              ||||||||||||||||||||
Sbjct: 201325 atcaggcaggcaggcgtgac 201306
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>dbj|AP000342.1| Plasmid R100 DNA, complete sequence
          Length = 94281

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  cgccagctccagcgccacca 331
            ||||||||||||||||||||
Sbjct: 2601 cgccagctccagcgccacca 2582


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,223,948
Number of Sequences: 3902068
Number of extensions: 3223948
Number of successful extensions: 66249
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65912
Number of HSP's gapped (non-prelim): 331
length of query: 453
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 431
effective length of database: 17,147,199,772
effective search space: 7390443101732
effective search space used: 7390443101732
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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