ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart57f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SURE_HELPY (O25584) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleosid... 33 0.13
2SURE_HELPJ (Q9ZKS0) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleosid... 33 0.13
3RTX1B_ACTPL (P26760) Toxin RTX-I translocation ATP-binding prote... 30 1.4
4GMHA_SYNY3 (Q55797) Phosphoheptose isomerase (EC 5.3.1.-) (Sedoh... 29 2.4
5PCX_DROME (P18490) Protein pecanex 28 7.1
6CYF_CYAPA (P48123) Apocytochrome f precursor 27 9.2
7SHBG_RABIT (P15196) Sex hormone-binding globulin precursor (SHBG... 27 9.2

>SURE_HELPY (O25584) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside|
           5'-monophosphate phosphohydrolase)
          Length = 267

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = +1

Query: 145 ESRHYKIALGCPDDILWIALMILNSAVVKRNVLCNLHCPTSRGASTIHISSFSGPLE 315
           E RHY+I  G P D +++A+  L   V    V+  ++  ++ G  TI+  + +G +E
Sbjct: 61  EGRHYRIDDGTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIE 117



to top

>SURE_HELPJ (Q9ZKS0) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside|
           5'-monophosphate phosphohydrolase)
          Length = 267

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = +1

Query: 145 ESRHYKIALGCPDDILWIALMILNSAVVKRNVLCNLHCPTSRGASTIHISSFSGPLE 315
           E RHY+I  G P D +++A+  L   V    V+  ++  ++ G  TI+  + +G +E
Sbjct: 61  EGRHYRIDDGTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIE 117



to top

>RTX1B_ACTPL (P26760) Toxin RTX-I translocation ATP-binding protein (RTX-I toxin|
           determinant B) (APX-IB) (HLY-IB) (Cytolysin IB) (CLY-IB)
          Length = 707

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 40  VMGSTSIHMGWFRFLSPLLRKK 105
           ++GS   +MGW  F+SP+LR++
Sbjct: 297 ILGSLPFYMGWSIFISPILRRR 318



to top

>GMHA_SYNY3 (Q55797) Phosphoheptose isomerase (EC 5.3.1.-) (Sedoheptulose|
           7-phosphate isomerase)
          Length = 194

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +1

Query: 166 ALGCPDDILWIALMILNSAVVKRNVLCNLHCPTSRGASTIHISSFSGPL 312
           ALG P DILW     L+++    NVL  L C   +G  TI ++  +G L
Sbjct: 102 ALGQPGDILW----GLSTSGKSTNVLHALKCAKDKGLHTIGMAGNNGGL 146



to top

>PCX_DROME (P18490) Protein pecanex|
          Length = 3433

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
 Frame = +1

Query: 37   YVMGSTSIHMGWFRFLSPLLRKKWVY*LYLRCKIPPESRHYKIALGCPDDILWIALMILN 216
            Y++     HM W  F  PLLR++             E   +++ L  P  I+W   + + 
Sbjct: 1873 YIVPQMRKHMPWLCFSRPLLRQR-------------EFGQFEV-LNAP-KIMWFEKLYIY 1917

Query: 217  SAVVKRNVLCNLHCPTSRGA-STIHISSFSGP 309
             +V++RNVL  L   +S  A S + ++ F  P
Sbjct: 1918 LSVLERNVLFPLLAISSLTADSQLIVAKFGLP 1949



to top

>CYF_CYAPA (P48123) Apocytochrome f precursor|
          Length = 321

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 259 PTSRGASTIHISSFSGPLEVFGILMLP 339
           P  +GA  I  +   GPL V  +LMLP
Sbjct: 89  PIDKGAQQIQANGQKGPLNVGAVLMLP 115



to top

>SHBG_RABIT (P15196) Sex hormone-binding globulin precursor (SHBG) (Sex|
           steroid-binding protein) (SBP) (Testis-specific
           androgen-binding protein) (ABP)
          Length = 398

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 106 WVY*LYLRCKIPPESRHYKIALGCPDDILWIALMILNSAVV 228
           W + L L  K P E     +ALG P+D  W++L + +  VV
Sbjct: 244 WAFSLDLELK-PSEGSGRLLALGTPEDPNWLSLHLQDQKVV 283


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,608,179
Number of Sequences: 219361
Number of extensions: 1175061
Number of successful extensions: 2517
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2516
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top