Clone Name | rbart57f01 |
---|---|
Clone Library Name | barley_pub |
>emb|AL929015.3| Mouse DNA sequence from clone RP23-412F11 on chromosome 2, complete sequence Length = 142296 Score = 42.1 bits (21), Expect = 0.057 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 acacagatgggaaattaagca 30 ||||||||||||||||||||| Sbjct: 126999 acacagatgggaaattaagca 127019
>gb|AC098936.2| Homo sapiens chromosome 1 clone RP11-576D8, complete sequence Length = 151324 Score = 38.2 bits (19), Expect = 0.90 Identities = 22/23 (95%) Strand = Plus / Minus Query: 8 acacacagatgggaaattaagca 30 |||||||||||||||| |||||| Sbjct: 135709 acacacagatgggaaaataagca 135687
>gb|AC163610.4| Mus musculus BAC clone RP23-59P17 from chromosome 13, complete sequence Length = 237111 Score = 36.2 bits (18), Expect = 3.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 8 acacacagatgggaaatt 25 |||||||||||||||||| Sbjct: 169199 acacacagatgggaaatt 169182
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 36.2 bits (18), Expect = 3.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 14 agatgggaaattaagcat 31 |||||||||||||||||| Sbjct: 1253199 agatgggaaattaagcat 1253182
>emb|AL034422.24|HS1141E15 Human DNA sequence from clone RP5-1141E15 on chromosome 20q11.23-12 Contains the 5' end of GHRH gene for growth hormone releasing hormone, the MANBAL gene for mannosidase beta A lysosomal-like, the 5' end of the SRC gene for v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog and a CpG island, complete sequence Length = 113681 Score = 36.2 bits (18), Expect = 3.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 11 cacagatgggaaattaag 28 |||||||||||||||||| Sbjct: 84495 cacagatgggaaattaag 84478
>emb|AL022345.2|HSY738F9 Human DNA sequence from clone XX-Y738F9 on chromosome 10 Contains the ZNF37B pseudogene for zinc finger protein 37b (KOX 21), a eukaryotic translation initiation factor 3 subunit 6 interacting protein (EIF3S6IP) pseudogene, the 3' end of the ZNF11B gene for zinc finger protein 11b (KOX 2), a novel gene (FLJ23327) and two CpG Islands, complete sequence Length = 146328 Score = 36.2 bits (18), Expect = 3.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 7 aacacacagatgggaaat 24 |||||||||||||||||| Sbjct: 16761 aacacacagatgggaaat 16744
>emb|CR860730.1| Pongo pygmaeus mRNA; cDNA DKFZp459J0627 (from clone DKFZp459J0627) Length = 4473 Score = 36.2 bits (18), Expect = 3.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 7 aacacacagatgggaaat 24 |||||||||||||||||| Sbjct: 2197 aacacacagatgggaaat 2214
>gb|AF272983.1|AF272983 Homo sapiens SRC tyrosine kinase gene, exons 1alpha and 1a, alternatively spliced Length = 4688 Score = 36.2 bits (18), Expect = 3.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 11 cacagatgggaaattaag 28 |||||||||||||||||| Sbjct: 3274 cacagatgggaaattaag 3257
>emb|BX842663.3| Mouse DNA sequence from clone RP23-176P20 on chromosome 2, complete sequence Length = 195115 Score = 36.2 bits (18), Expect = 3.5 Identities = 18/18 (100%) Strand = Plus / Minus Query: 6 taacacacagatgggaaa 23 |||||||||||||||||| Sbjct: 119930 taacacacagatgggaaa 119913
>dbj|AK026980.1| Homo sapiens cDNA: FLJ23327 fis, clone HEP12630, highly similar to HSZNF37 Homo sapiens ZNF37A mRNA for zinc finger protein Length = 2536 Score = 36.2 bits (18), Expect = 3.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 7 aacacacagatgggaaat 24 |||||||||||||||||| Sbjct: 2064 aacacacagatgggaaat 2081
>gb|AC115289.6| Mus musculus BAC clone RP23-57G16 from 13, complete sequence Length = 210109 Score = 36.2 bits (18), Expect = 3.5 Identities = 24/26 (92%) Strand = Plus / Plus Query: 5 gtaacacacagatgggaaattaagca 30 ||||||||||||||| |||| ||||| Sbjct: 84672 gtaacacacagatggtaaatgaagca 84697
>gb|AC154695.3| Mus musculus BAC clone RP24-341I23 from 13, complete sequence Length = 149545 Score = 36.2 bits (18), Expect = 3.5 Identities = 24/26 (92%) Strand = Plus / Plus Query: 5 gtaacacacagatgggaaattaagca 30 ||||||||||||||| |||| ||||| Sbjct: 148636 gtaacacacagatggtaaatgaagca 148661
>emb|AL844890.6| Mouse DNA sequence from clone RP23-380E2 on chromosome 2, complete sequence Length = 53045 Score = 36.2 bits (18), Expect = 3.5 Identities = 21/22 (95%) Strand = Plus / Plus Query: 6 taacacacagatgggaaattaa 27 |||| ||||||||||||||||| Sbjct: 16849 taacccacagatgggaaattaa 16870
>emb|AL772239.8| Mouse DNA sequence from clone RP23-179O4 on chromosome 2, complete sequence Length = 233097 Score = 36.2 bits (18), Expect = 3.5 Identities = 18/18 (100%) Strand = Plus / Plus Query: 7 aacacacagatgggaaat 24 |||||||||||||||||| Sbjct: 222176 aacacacagatgggaaat 222193 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 275,836 Number of Sequences: 3902068 Number of extensions: 275836 Number of successful extensions: 74700 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74678 Number of HSP's gapped (non-prelim): 22 length of query: 36 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 16 effective length of database: 17,155,003,908 effective search space: 274480062528 effective search space used: 274480062528 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)