ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart57e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_473159.1| Oryza sativa (japonica cultivar-group), predic... 62 2e-06
2emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4,... 62 2e-06
3emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4,... 62 2e-06
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
5emb|CR361541.11| Zebrafish DNA sequence from clone DKEY-99G10 in... 44 0.37
6dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
7dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
8gb|AC154555.3| Mus musculus BAC clone RP23-418L12 from chromosom... 42 1.5
9gb|AC145477.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
10gb|AC035138.9| Homo sapiens chromosome 10 clone RP11-314D6, comp... 42 1.5
11dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
12dbj|AP005689.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
13emb|CT030693.7| Mouse DNA sequence from clone RP24-109B11 on chr... 42 1.5
14gb|AC132487.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
15gb|AC165963.4| Mus musculus BAC clone RP23-338N22 from chromosom... 40 5.8
16gb|AC132246.2| Mus musculus BAC clone RP24-421K16 from chromosom... 40 5.8
17gb|AC129221.3| Mus musculus BAC clone RP24-480M20 from chromosom... 40 5.8
18gb|AC141628.2| Mus musculus BAC clone RP24-358E15 from chromosom... 40 5.8
19gb|AC127423.4| Mus musculus BAC clone RP24-487D5 from chromosome... 40 5.8
20gb|AC122924.2| Mus musculus BAC clone RP23-39M16 from 12, comple... 40 5.8
21emb|CR376745.11| Zebrafish DNA sequence from clone CH211-147K10 ... 40 5.8
22emb|BX470121.7| Zebrafish DNA sequence from clone DKEY-267G17 in... 40 5.8
23gb|AC020630.21| Homo sapiens 3 BAC RP11-197N19 (Roswell Park Can... 40 5.8
24gb|AC087072.2|AC087072 Homo sapiens chromosome 7 clone RP11-609L... 40 5.8
25dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
26gb|AC133647.3| Mus musculus BAC clone RP23-287D22 from chromosom... 40 5.8
27emb|BX088724.6| Zebrafish DNA sequence from clone DKEY-15G22, co... 40 5.8
28emb|AL161733.20| Human DNA sequence from clone RP11-83J21 on chr... 40 5.8
29gb|AC110160.10| Mus musculus chromosome 1, clone RP23-66A20, com... 40 5.8
30gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
31gb|AC149056.6| Mus musculus BAC clone RP23-344G11 from chromosom... 40 5.8
32emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb... 40 5.8
33gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome 40 5.8
34emb|AL935182.13| Zebrafish DNA sequence from clone CH211-121I12,... 40 5.8
35gb|AC149279.3| Mus musculus BAC clone RP24-89F23 from 7, complet... 40 5.8
36emb|CR388402.15| Zebrafish DNA sequence from clone DKEY-97I21 in... 40 5.8
37gb|AC149869.2| Mus musculus BAC clone RP23-3E12 from 7, complete... 40 5.8
38gb|AC149087.4| Mus musculus BAC clone RP23-240E3 from 18, comple... 40 5.8
39gb|AC147029.3| Mus musculus BAC clone RP23-239P5 from 12, comple... 40 5.8
40emb|AL844559.14| Zebrafish DNA sequence from clone DKEY-14K1, co... 40 5.8
41emb|AL714021.12| Mouse DNA sequence from clone RP23-305F20 on ch... 40 5.8

>ref|XM_473159.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1083

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                        
Query: 342  gagcccgtgagaaagtctcggtaccacttccccgacatctttggagtcctctcctgcgtt 401
            ||||||||||| || ||||  ||||||||  | |||||||| ||| ||||||||||||| 
Sbjct: 1034 gagcccgtgaggaaatctctataccacttggcagacatcttgggaatcctctcctgcgtg 975

                       
Query: 402  tcaaaatccac 412
            |||||||||||
Sbjct: 974  tcaaaatccac 964



to top

>emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0070J16,
            complete sequence
          Length = 130718

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                        
Query: 342  gagcccgtgagaaagtctcggtaccacttccccgacatctttggagtcctctcctgcgtt 401
            ||||||||||| || ||||  ||||||||  | |||||||| ||| ||||||||||||| 
Sbjct: 3338 gagcccgtgaggaaatctctataccacttggcagacatcttgggaatcctctcctgcgtg 3397

                       
Query: 402  tcaaaatccac 412
            |||||||||||
Sbjct: 3398 tcaaaatccac 3408



to top

>emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0004N05,
              complete sequence
          Length = 158601

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                          
Query: 342    gagcccgtgagaaagtctcggtaccacttccccgacatctttggagtcctctcctgcgtt 401
              ||||||||||| || ||||  ||||||||  | |||||||| ||| ||||||||||||| 
Sbjct: 109809 gagcccgtgaggaaatctctataccacttggcagacatcttgggaatcctctcctgcgtg 109868

                         
Query: 402    tcaaaatccac 412
              |||||||||||
Sbjct: 109869 tcaaaatccac 109879



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                            
Query: 342      gagcccgtgagaaagtctcggtaccacttccccgacatctttggagtcctctcctgcgtt 401
                ||||||||||| || ||||  ||||||||  | |||||||| ||| ||||||||||||| 
Sbjct: 25623611 gagcccgtgaggaaatctctataccacttggcagacatcttgggaatcctctcctgcgtg 25623670

                           
Query: 402      tcaaaatccac 412
                |||||||||||
Sbjct: 25623671 tcaaaatccac 25623681



to top

>emb|CR361541.11| Zebrafish DNA sequence from clone DKEY-99G10 in linkage group 17,
              complete sequence
          Length = 123196

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 192    taatattttcctataagaaaaa 213
              ||||||||||||||||||||||
Sbjct: 120855 taatattttcctataagaaaaa 120876



to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 169      atgtgtagcagactagcagtac 190
                ||||||||||||||||||||||
Sbjct: 18318026 atgtgtagcagactagcagtac 18318005



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 210      aaaagcagtatctatagtatctata 234
                |||| ||||||||||||||||||||
Sbjct: 11236812 aaaaccagtatctatagtatctata 11236836



to top

>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0463G11
          Length = 154188

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 169   atgtgtagcagactagcagtac 190
             ||||||||||||||||||||||
Sbjct: 32762 atgtgtagcagactagcagtac 32741



to top

>gb|AC154555.3| Mus musculus BAC clone RP23-418L12 from chromosome 16, complete sequence
          Length = 192614

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 210    aaaagcagtatctatagtatctata 234
              |||| ||||||||||||||||||||
Sbjct: 176875 aaaatcagtatctatagtatctata 176851



to top

>gb|AC145477.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1402B06,
             complete sequence
          Length = 134001

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 172   tgtagcagactagcagtacctaata 196
             |||||||||||||||||||| ||||
Sbjct: 36201 tgtagcagactagcagtaccaaata 36177



to top

>gb|AC035138.9| Homo sapiens chromosome 10 clone RP11-314D6, complete sequence
          Length = 184328

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 187   gtacctaatattttcctataa 207
             |||||||||||||||||||||
Sbjct: 35666 gtacctaatattttcctataa 35686



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 172     tgtagcagactagcagtacctaata 196
               |||||||||||||||||||| ||||
Sbjct: 7758615 tgtagcagactagcagtaccaaata 7758591



to top

>dbj|AP005689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0042H24
          Length = 186313

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 210   aaaagcagtatctatagtatctata 234
             |||| ||||||||||||||||||||
Sbjct: 71984 aaaaccagtatctatagtatctata 72008



to top

>emb|CT030693.7| Mouse DNA sequence from clone RP24-109B11 on chromosome 16, complete
             sequence
          Length = 166299

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 210   aaaagcagtatctatagtatctata 234
             |||| ||||||||||||||||||||
Sbjct: 98825 aaaatcagtatctatagtatctata 98801



to top

>gb|AC132487.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0499F10,
             complete sequence
          Length = 75032

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 172   tgtagcagactagcagtacctaata 196
             |||||||||||||||||||| ||||
Sbjct: 69123 tgtagcagactagcagtaccaaata 69099



to top

>gb|AC165963.4| Mus musculus BAC clone RP23-338N22 from chromosome 7, complete sequence
          Length = 218284

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 99    atataccttcacatcaccctaaat 122
             |||||||||||||| |||||||||
Sbjct: 18253 atataccttcacatgaccctaaat 18276



to top

>gb|AC132246.2| Mus musculus BAC clone RP24-421K16 from chromosome 7, complete sequence
          Length = 155682

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 99     atataccttcacatcaccctaaat 122
              |||||||||||||| |||||||||
Sbjct: 127776 atataccttcacatgaccctaaat 127799



to top

>gb|AC129221.3| Mus musculus BAC clone RP24-480M20 from chromosome 7, complete sequence
          Length = 202119

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 99     atataccttcacatcaccctaaat 122
              |||||||||||||| |||||||||
Sbjct: 102118 atataccttcacatgaccctaaat 102141



to top

>gb|AC141628.2| Mus musculus BAC clone RP24-358E15 from chromosome 18, complete sequence
          Length = 170129

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    tacctaatattttcctataa 207
              ||||||||||||||||||||
Sbjct: 153988 tacctaatattttcctataa 154007



to top

>gb|AC127423.4| Mus musculus BAC clone RP24-487D5 from chromosome 7, complete sequence
          Length = 160293

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 99    atataccttcacatcaccctaaat 122
             |||||||||||||| |||||||||
Sbjct: 75942 atataccttcacatgaccctaaat 75919



to top

>gb|AC122924.2| Mus musculus BAC clone RP23-39M16 from 12, complete sequence
          Length = 228614

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   tattttcctataagaaaaag 214
             ||||||||||||||||||||
Sbjct: 94717 tattttcctataagaaaaag 94736



to top

>emb|CR376745.11| Zebrafish DNA sequence from clone CH211-147K10 in linkage group 25,
             complete sequence
          Length = 186587

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 304   agtctgctctcagcgtctgc 323
             ||||||||||||||||||||
Sbjct: 84381 agtctgctctcagcgtctgc 84400



to top

>emb|BX470121.7| Zebrafish DNA sequence from clone DKEY-267G17 in linkage group 7,
             complete sequence
          Length = 97476

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   tatcatgagtctgctctcag 316
             ||||||||||||||||||||
Sbjct: 11739 tatcatgagtctgctctcag 11758



to top

>gb|AC020630.21| Homo sapiens 3 BAC RP11-197N19 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 164519

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 103  accttcacatcaccctaaat 122
            ||||||||||||||||||||
Sbjct: 1653 accttcacatcaccctaaat 1672



to top

>gb|AC087072.2|AC087072 Homo sapiens chromosome 7 clone RP11-609L3, complete sequence
          Length = 150856

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    tcttaaaaaacaagtgatga 78
             ||||||||||||||||||||
Sbjct: 47180 tcttaaaaaacaagtgatga 47199



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 215     cagtatctatagtatctata 234
               ||||||||||||||||||||
Sbjct: 4021067 cagtatctatagtatctata 4021048



to top

>gb|AC133647.3| Mus musculus BAC clone RP23-287D22 from chromosome 7, complete sequence
          Length = 197003

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 99    atataccttcacatcaccctaaat 122
             |||||||||||||| |||||||||
Sbjct: 10607 atataccttcacatgaccctaaat 10630



to top

>emb|BX088724.6| Zebrafish DNA sequence from clone DKEY-15G22, complete sequence
          Length = 198368

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    tatagtatctatattcactg 241
              ||||||||||||||||||||
Sbjct: 128401 tatagtatctatattcactg 128382



to top

>emb|AL161733.20| Human DNA sequence from clone RP11-83J21 on chromosome 9, complete
              sequence
          Length = 176466

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 68     acaagtgatgacaacctgaagtcc 91
              ||||| ||||||||||||||||||
Sbjct: 148620 acaagagatgacaacctgaagtcc 148597



to top

>gb|AC110160.10| Mus musculus chromosome 1, clone RP23-66A20, complete sequence
          Length = 179096

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    aagtgatgacaacctgaagt 89
             ||||||||||||||||||||
Sbjct: 39062 aagtgatgacaacctgaagt 39081



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 215     cagtatctatagtatctata 234
               ||||||||||||||||||||
Sbjct: 4021054 cagtatctatagtatctata 4021035



to top

>gb|AC149056.6| Mus musculus BAC clone RP23-344G11 from chromosome 7, complete sequence
          Length = 199549

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 99     atataccttcacatcaccctaaat 122
              |||||||||||||| |||||||||
Sbjct: 196050 atataccttcacatgaccctaaat 196073



to top

>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 132682

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   cagtatctatagtatctata 234
             ||||||||||||||||||||
Sbjct: 57488 cagtatctatagtatctata 57469



to top

>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome
          Length = 1992676

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 183    agcagtacctaatattttcctata 206
              |||| |||||||||||||||||||
Sbjct: 944222 agcattacctaatattttcctata 944199



to top

>emb|AL935182.13| Zebrafish DNA sequence from clone CH211-121I12, complete sequence
          Length = 186045

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   tatagtatctatattcactg 241
             ||||||||||||||||||||
Sbjct: 76970 tatagtatctatattcactg 76951



to top

>gb|AC149279.3| Mus musculus BAC clone RP24-89F23 from 7, complete sequence
          Length = 210311

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 99    atataccttcacatcaccctaaat 122
             |||||||||||||| |||||||||
Sbjct: 28544 atataccttcacatgaccctaaat 28567



to top

>emb|CR388402.15| Zebrafish DNA sequence from clone DKEY-97I21 in linkage group 1, complete
              sequence
          Length = 155300

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 192    taatattttcctataagaaa 211
              ||||||||||||||||||||
Sbjct: 135984 taatattttcctataagaaa 136003



to top

>gb|AC149869.2| Mus musculus BAC clone RP23-3E12 from 7, complete sequence
          Length = 195392

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 99    atataccttcacatcaccctaaat 122
             |||||||||||||| |||||||||
Sbjct: 10680 atataccttcacatgaccctaaat 10703



to top

>gb|AC149087.4| Mus musculus BAC clone RP23-240E3 from 18, complete sequence
          Length = 227785

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 188   tacctaatattttcctataa 207
             ||||||||||||||||||||
Sbjct: 72711 tacctaatattttcctataa 72730



to top

>gb|AC147029.3| Mus musculus BAC clone RP23-239P5 from 12, complete sequence
          Length = 194385

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   tattttcctataagaaaaag 214
             ||||||||||||||||||||
Sbjct: 63955 tattttcctataagaaaaag 63936



to top

>emb|AL844559.14| Zebrafish DNA sequence from clone DKEY-14K1, complete sequence
          Length = 216608

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   taatattttcctataagaaa 211
             ||||||||||||||||||||
Sbjct: 30483 taatattttcctataagaaa 30502



to top

>emb|AL714021.12| Mouse DNA sequence from clone RP23-305F20 on chromosome X, complete
              sequence
          Length = 182607

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 270    tggatctgacagtagaatggctgc 293
              |||||||||||||||| |||||||
Sbjct: 139635 tggatctgacagtagattggctgc 139658


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,289,201
Number of Sequences: 3902068
Number of extensions: 3289201
Number of successful extensions: 57147
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56958
Number of HSP's gapped (non-prelim): 189
length of query: 433
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 411
effective length of database: 17,147,199,772
effective search space: 7047499106292
effective search space used: 7047499106292
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top