Clone Name | rbart57e10 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_473159.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1083 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 342 gagcccgtgagaaagtctcggtaccacttccccgacatctttggagtcctctcctgcgtt 401 ||||||||||| || |||| |||||||| | |||||||| ||| ||||||||||||| Sbjct: 1034 gagcccgtgaggaaatctctataccacttggcagacatcttgggaatcctctcctgcgtg 975 Query: 402 tcaaaatccac 412 ||||||||||| Sbjct: 974 tcaaaatccac 964
>emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0070J16, complete sequence Length = 130718 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 342 gagcccgtgagaaagtctcggtaccacttccccgacatctttggagtcctctcctgcgtt 401 ||||||||||| || |||| |||||||| | |||||||| ||| ||||||||||||| Sbjct: 3338 gagcccgtgaggaaatctctataccacttggcagacatcttgggaatcctctcctgcgtg 3397 Query: 402 tcaaaatccac 412 ||||||||||| Sbjct: 3398 tcaaaatccac 3408
>emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0004N05, complete sequence Length = 158601 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 342 gagcccgtgagaaagtctcggtaccacttccccgacatctttggagtcctctcctgcgtt 401 ||||||||||| || |||| |||||||| | |||||||| ||| ||||||||||||| Sbjct: 109809 gagcccgtgaggaaatctctataccacttggcagacatcttgggaatcctctcctgcgtg 109868 Query: 402 tcaaaatccac 412 ||||||||||| Sbjct: 109869 tcaaaatccac 109879
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 342 gagcccgtgagaaagtctcggtaccacttccccgacatctttggagtcctctcctgcgtt 401 ||||||||||| || |||| |||||||| | |||||||| ||| ||||||||||||| Sbjct: 25623611 gagcccgtgaggaaatctctataccacttggcagacatcttgggaatcctctcctgcgtg 25623670 Query: 402 tcaaaatccac 412 ||||||||||| Sbjct: 25623671 tcaaaatccac 25623681
>emb|CR361541.11| Zebrafish DNA sequence from clone DKEY-99G10 in linkage group 17, complete sequence Length = 123196 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 192 taatattttcctataagaaaaa 213 |||||||||||||||||||||| Sbjct: 120855 taatattttcctataagaaaaa 120876
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 169 atgtgtagcagactagcagtac 190 |||||||||||||||||||||| Sbjct: 18318026 atgtgtagcagactagcagtac 18318005 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 210 aaaagcagtatctatagtatctata 234 |||| |||||||||||||||||||| Sbjct: 11236812 aaaaccagtatctatagtatctata 11236836
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463G11 Length = 154188 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 169 atgtgtagcagactagcagtac 190 |||||||||||||||||||||| Sbjct: 32762 atgtgtagcagactagcagtac 32741
>gb|AC154555.3| Mus musculus BAC clone RP23-418L12 from chromosome 16, complete sequence Length = 192614 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 210 aaaagcagtatctatagtatctata 234 |||| |||||||||||||||||||| Sbjct: 176875 aaaatcagtatctatagtatctata 176851
>gb|AC145477.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1402B06, complete sequence Length = 134001 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 172 tgtagcagactagcagtacctaata 196 |||||||||||||||||||| |||| Sbjct: 36201 tgtagcagactagcagtaccaaata 36177
>gb|AC035138.9| Homo sapiens chromosome 10 clone RP11-314D6, complete sequence Length = 184328 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 gtacctaatattttcctataa 207 ||||||||||||||||||||| Sbjct: 35666 gtacctaatattttcctataa 35686
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 172 tgtagcagactagcagtacctaata 196 |||||||||||||||||||| |||| Sbjct: 7758615 tgtagcagactagcagtaccaaata 7758591
>dbj|AP005689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0042H24 Length = 186313 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 210 aaaagcagtatctatagtatctata 234 |||| |||||||||||||||||||| Sbjct: 71984 aaaaccagtatctatagtatctata 72008
>emb|CT030693.7| Mouse DNA sequence from clone RP24-109B11 on chromosome 16, complete sequence Length = 166299 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 210 aaaagcagtatctatagtatctata 234 |||| |||||||||||||||||||| Sbjct: 98825 aaaatcagtatctatagtatctata 98801
>gb|AC132487.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0499F10, complete sequence Length = 75032 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 172 tgtagcagactagcagtacctaata 196 |||||||||||||||||||| |||| Sbjct: 69123 tgtagcagactagcagtaccaaata 69099
>gb|AC165963.4| Mus musculus BAC clone RP23-338N22 from chromosome 7, complete sequence Length = 218284 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 atataccttcacatcaccctaaat 122 |||||||||||||| ||||||||| Sbjct: 18253 atataccttcacatgaccctaaat 18276
>gb|AC132246.2| Mus musculus BAC clone RP24-421K16 from chromosome 7, complete sequence Length = 155682 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 atataccttcacatcaccctaaat 122 |||||||||||||| ||||||||| Sbjct: 127776 atataccttcacatgaccctaaat 127799
>gb|AC129221.3| Mus musculus BAC clone RP24-480M20 from chromosome 7, complete sequence Length = 202119 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 atataccttcacatcaccctaaat 122 |||||||||||||| ||||||||| Sbjct: 102118 atataccttcacatgaccctaaat 102141
>gb|AC141628.2| Mus musculus BAC clone RP24-358E15 from chromosome 18, complete sequence Length = 170129 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 tacctaatattttcctataa 207 |||||||||||||||||||| Sbjct: 153988 tacctaatattttcctataa 154007
>gb|AC127423.4| Mus musculus BAC clone RP24-487D5 from chromosome 7, complete sequence Length = 160293 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 atataccttcacatcaccctaaat 122 |||||||||||||| ||||||||| Sbjct: 75942 atataccttcacatgaccctaaat 75919
>gb|AC122924.2| Mus musculus BAC clone RP23-39M16 from 12, complete sequence Length = 228614 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tattttcctataagaaaaag 214 |||||||||||||||||||| Sbjct: 94717 tattttcctataagaaaaag 94736
>emb|CR376745.11| Zebrafish DNA sequence from clone CH211-147K10 in linkage group 25, complete sequence Length = 186587 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 agtctgctctcagcgtctgc 323 |||||||||||||||||||| Sbjct: 84381 agtctgctctcagcgtctgc 84400
>emb|BX470121.7| Zebrafish DNA sequence from clone DKEY-267G17 in linkage group 7, complete sequence Length = 97476 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 tatcatgagtctgctctcag 316 |||||||||||||||||||| Sbjct: 11739 tatcatgagtctgctctcag 11758
>gb|AC020630.21| Homo sapiens 3 BAC RP11-197N19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164519 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 accttcacatcaccctaaat 122 |||||||||||||||||||| Sbjct: 1653 accttcacatcaccctaaat 1672
>gb|AC087072.2|AC087072 Homo sapiens chromosome 7 clone RP11-609L3, complete sequence Length = 150856 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tcttaaaaaacaagtgatga 78 |||||||||||||||||||| Sbjct: 47180 tcttaaaaaacaagtgatga 47199
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 cagtatctatagtatctata 234 |||||||||||||||||||| Sbjct: 4021067 cagtatctatagtatctata 4021048
>gb|AC133647.3| Mus musculus BAC clone RP23-287D22 from chromosome 7, complete sequence Length = 197003 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 atataccttcacatcaccctaaat 122 |||||||||||||| ||||||||| Sbjct: 10607 atataccttcacatgaccctaaat 10630
>emb|BX088724.6| Zebrafish DNA sequence from clone DKEY-15G22, complete sequence Length = 198368 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 tatagtatctatattcactg 241 |||||||||||||||||||| Sbjct: 128401 tatagtatctatattcactg 128382
>emb|AL161733.20| Human DNA sequence from clone RP11-83J21 on chromosome 9, complete sequence Length = 176466 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 68 acaagtgatgacaacctgaagtcc 91 ||||| |||||||||||||||||| Sbjct: 148620 acaagagatgacaacctgaagtcc 148597
>gb|AC110160.10| Mus musculus chromosome 1, clone RP23-66A20, complete sequence Length = 179096 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 aagtgatgacaacctgaagt 89 |||||||||||||||||||| Sbjct: 39062 aagtgatgacaacctgaagt 39081
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 cagtatctatagtatctata 234 |||||||||||||||||||| Sbjct: 4021054 cagtatctatagtatctata 4021035
>gb|AC149056.6| Mus musculus BAC clone RP23-344G11 from chromosome 7, complete sequence Length = 199549 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 atataccttcacatcaccctaaat 122 |||||||||||||| ||||||||| Sbjct: 196050 atataccttcacatgaccctaaat 196073
>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132682 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 cagtatctatagtatctata 234 |||||||||||||||||||| Sbjct: 57488 cagtatctatagtatctata 57469
>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome Length = 1992676 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 agcagtacctaatattttcctata 206 |||| ||||||||||||||||||| Sbjct: 944222 agcattacctaatattttcctata 944199
>emb|AL935182.13| Zebrafish DNA sequence from clone CH211-121I12, complete sequence Length = 186045 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 tatagtatctatattcactg 241 |||||||||||||||||||| Sbjct: 76970 tatagtatctatattcactg 76951
>gb|AC149279.3| Mus musculus BAC clone RP24-89F23 from 7, complete sequence Length = 210311 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 atataccttcacatcaccctaaat 122 |||||||||||||| ||||||||| Sbjct: 28544 atataccttcacatgaccctaaat 28567
>emb|CR388402.15| Zebrafish DNA sequence from clone DKEY-97I21 in linkage group 1, complete sequence Length = 155300 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 taatattttcctataagaaa 211 |||||||||||||||||||| Sbjct: 135984 taatattttcctataagaaa 136003
>gb|AC149869.2| Mus musculus BAC clone RP23-3E12 from 7, complete sequence Length = 195392 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 99 atataccttcacatcaccctaaat 122 |||||||||||||| ||||||||| Sbjct: 10680 atataccttcacatgaccctaaat 10703
>gb|AC149087.4| Mus musculus BAC clone RP23-240E3 from 18, complete sequence Length = 227785 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 tacctaatattttcctataa 207 |||||||||||||||||||| Sbjct: 72711 tacctaatattttcctataa 72730
>gb|AC147029.3| Mus musculus BAC clone RP23-239P5 from 12, complete sequence Length = 194385 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 tattttcctataagaaaaag 214 |||||||||||||||||||| Sbjct: 63955 tattttcctataagaaaaag 63936
>emb|AL844559.14| Zebrafish DNA sequence from clone DKEY-14K1, complete sequence Length = 216608 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 taatattttcctataagaaa 211 |||||||||||||||||||| Sbjct: 30483 taatattttcctataagaaa 30502
>emb|AL714021.12| Mouse DNA sequence from clone RP23-305F20 on chromosome X, complete sequence Length = 182607 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 270 tggatctgacagtagaatggctgc 293 |||||||||||||||| ||||||| Sbjct: 139635 tggatctgacagtagattggctgc 139658 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,289,201 Number of Sequences: 3902068 Number of extensions: 3289201 Number of successful extensions: 57147 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56958 Number of HSP's gapped (non-prelim): 189 length of query: 433 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 411 effective length of database: 17,147,199,772 effective search space: 7047499106292 effective search space used: 7047499106292 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)