ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart57e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CP2S1_MOUSE (Q9DBX6) Cytochrome P450 2S1 (EC 1.14.14.1) (CYPIIS1) 34 0.097
2CR9CA_BACTO (Q45733) Pesticidal crystal protein cry9Ca (Insectic... 28 5.3
3Y2235_STRCO (Q9Z4V7) Hypothetical protein SCO2235 (ORFU1E) 28 5.3
4ACT_CRYNV (P48465) Actin 28 6.9
5ACTN_STYCL (P53475) Actin, muscle 27 9.1
6ACTM_STYCL (P26198) Actin, muscle 27 9.1

>CP2S1_MOUSE (Q9DBX6) Cytochrome P450 2S1 (EC 1.14.14.1) (CYPIIS1)|
          Length = 501

 Score = 33.9 bits (76), Expect = 0.097
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = +2

Query: 200 GISQAWQQANTLSNLILLQLETPFTTVANHIGTAIFFLVIMTPG*SVKTHQRLYQRRTPQ 379
           GIS  W QA  + + +L  L  P T + +H+GT   F +       V+ HQ  +Q   P 
Sbjct: 212 GISSPWGQAYEMFSWLLQPLPGPHTQLQHHLGTLAAFTIQ-----QVQKHQGRFQTSGPA 266

Query: 380 TD 385
            D
Sbjct: 267 RD 268



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>CR9CA_BACTO (Q45733) Pesticidal crystal protein cry9Ca (Insecticidal|
           delta-endotoxin CryIXC(a)) (Crystaline entomocidal
           protoxin) (130 kDa crystal protein)
          Length = 1157

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +1

Query: 241 LNIITTRDPFHHCCKSYWHGHLL-LGYNDSRVICEDSSEIVSTKNTTNRP 387
           L I + R P       YW GH L   Y +   + EDS  +++T   T  P
Sbjct: 353 LTISSNRFPVSSNFMDYWSGHTLRRSYLNDSAVQEDSYGLITTTRATINP 402



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>Y2235_STRCO (Q9Z4V7) Hypothetical protein SCO2235 (ORFU1E)|
          Length = 87

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = +3

Query: 3   NKIDSRFHVTSTRTNAVIM---DFTAWSCT 83
           N+  +  H+TS + NAV+M   DFTAW+ T
Sbjct: 20  NEDHAPVHITSRKGNAVLMSEEDFTAWTET 49



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>ACT_CRYNV (P48465) Actin|
          Length = 375

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 211 GLATSKYPVKLNIITTRDPFHHCCKSYWHGHLLLGYNDSRVICEDSSEIVS 363
           G+ T KYP++  I+T  D      +  WH      YN+ RV  ED   +++
Sbjct: 63  GILTLKYPIEHGIVTNWDDM----EKIWHHTF---YNELRVAPEDDPVLLT 106



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>ACTN_STYCL (P53475) Actin, muscle|
          Length = 378

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 211 GLATSKYPVKLNIITTRDPFHHCCKSYWHGHLLLGYNDSRVICEDSSEIVS 363
           G+ T KYP++  IIT  D      +  WH  +   YN+ RV  E+   +++
Sbjct: 66  GILTLKYPIEHGIITNWDDM----EKIWHHTM---YNELRVAPEEHPTLLT 109



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>ACTM_STYCL (P26198) Actin, muscle|
          Length = 378

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 211 GLATSKYPVKLNIITTRDPFHHCCKSYWHGHLLLGYNDSRVICEDSSEIVS 363
           G+ T KYP++  IIT  D      +  WH  +   YN+ RV  E+   +++
Sbjct: 66  GILTLKYPIEHGIITNWDDM----EKIWHHTM---YNELRVAPEEHPTLLT 109


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,054,741
Number of Sequences: 219361
Number of extensions: 1023976
Number of successful extensions: 2961
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2961
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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