>ref|XM_512411.1| PREDICTED: Pan troglodytes transportin 2 (importin 3, karyopherin
           beta 2b) (LOC455748), mRNA
          Length = 2960

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 333 gatctgtgaagactcatcagag 354
           ||||||||||||||||||||||
Sbjct: 645 gatctgtgaagactcatcagag 666

>ref|NM_013433.3| Homo sapiens transportin 2 (importin 3, karyopherin beta 2b)
           (TNPO2), mRNA
          Length = 4901

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 333 gatctgtgaagactcatcagag 354
           ||||||||||||||||||||||
Sbjct: 600 gatctgtgaagactcatcagag 621

>gb|BC072420.1| Homo sapiens transportin 2 (importin 3, karyopherin beta 2b), mRNA
           (cDNA clone MGC:90166 IMAGE:6184325), complete cds
          Length = 4901

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 333 gatctgtgaagactcatcagag 354
           ||||||||||||||||||||||
Sbjct: 600 gatctgtgaagactcatcagag 621

>ref|XM_814392.1| Trypanosoma cruzi strain CL Brener oxidoreductase-like protein
           (Tc00.1047053504427.150) partial mRNA
          Length = 1206

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 79  gcacattccaacacccatttgt 100
           ||||||||||||||||||||||
Sbjct: 287 gcacattccaacacccatttgt 266

>gb|BC063679.1| Homo sapiens cDNA clone IMAGE:4358892, **** WARNING: chimeric clone
           ****
          Length = 1899

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 333 gatctgtgaagactcatcagag 354
           ||||||||||||||||||||||
Sbjct: 481 gatctgtgaagactcatcagag 502

>gb|BC018314.1| Homo sapiens transportin 2 (importin 3, karyopherin beta 2b), mRNA
           (cDNA clone IMAGE:4154236), containing frame-shift
           errors
          Length = 2377

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 333 gatctgtgaagactcatcagag 354
           ||||||||||||||||||||||
Sbjct: 518 gatctgtgaagactcatcagag 539

>emb|CR385069.8| Zebrafish DNA sequence from clone DKEY-22C20 in linkage group 13,
             complete sequence
          Length = 68470

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 237   caaacttaatattattacaact 258
             ||||||||||||||||||||||
Sbjct: 52529 caaacttaatattattacaact 52508

>dbj|AK056183.1| Homo sapiens cDNA FLJ31621 fis, clone NT2RI2003205, highly similar to
            Homo sapiens transportin2 mRNA
          Length = 2836

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 333  gatctgtgaagactcatcagag 354
            ||||||||||||||||||||||
Sbjct: 1153 gatctgtgaagactcatcagag 1174

>gb|AC018761.6| Homo sapiens chromosome 19 clone CTD-2659N19, complete sequence
          Length = 147750

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 333   gatctgtgaagactcatcagag 354
             ||||||||||||||||||||||
Sbjct: 60234 gatctgtgaagactcatcagag 60213

>dbj|AB210011.1| Homo sapiens mRNA for TNPO2 variant protein, partial cds, clone:
            fh13310
          Length = 4993

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 333  gatctgtgaagactcatcagag 354
            ||||||||||||||||||||||
Sbjct: 1194 gatctgtgaagactcatcagag 1215

>gb|AF019039.1|AF019039 Homo sapiens transportin2 mRNA, complete cds
          Length = 2926

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 333 gatctgtgaagactcatcagag 354
           ||||||||||||||||||||||
Sbjct: 580 gatctgtgaagactcatcagag 601

>gb|AF007748.1|AF007748 Homo sapiens karyopherin beta2b homolog mRNA, complete cds
          Length = 3027

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 333 gatctgtgaagactcatcagag 354
           ||||||||||||||||||||||
Sbjct: 747 gatctgtgaagactcatcagag 768

>gb|AC011810.8|AC011810 Arabidopsis thaliana chromosome I BAC T6J4 genomic sequence, complete
             sequence
          Length = 103157

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 233   ctgtcaaacttaatattatta 253
             |||||||||||||||||||||
Sbjct: 44996 ctgtcaaacttaatattatta 44976

>gb|AC115289.6| Mus musculus BAC clone RP23-57G16 from 13, complete sequence
          Length = 210109

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 305    ttcttcttggttataatgact 325
              |||||||||||||||||||||
Sbjct: 156152 ttcttcttggttataatgact 156132

>emb|AL670464.12| Mouse DNA sequence from clone RP23-12I24 on chromosome 4, complete
             sequence
          Length = 203558

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 71    atggagttgcacattccaacaccca 95
             ||||||||||||| |||||||||||
Sbjct: 34702 atggagttgcacagtccaacaccca 34726

>ref|XM_508443.1| PREDICTED: Pan troglodytes similar to seven transmembrane helix
           receptor (LOC451204), mRNA
          Length = 1829

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 327 cagggtgatctgtgaagact 346
           ||||||||||||||||||||
Sbjct: 64  cagggtgatctgtgaagact 45

>gb|AC140459.2| Mus musculus BAC clone RP24-129G21 from chromosome 16, complete sequence
          Length = 177790

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     caacacccatttgtcaaaat 106
              ||||||||||||||||||||
Sbjct: 116817 caacacccatttgtcaaaat 116836

>emb|AL031390.4|HS197L1 Human DNA sequence from clone RP1-197L1 on chromosome 6q24.1-25.2
             Contains a pseudogene similar to a hypothetical mouse
             protein, the gene for hypothetical protein MGC3133 and
             part of the PLAGL1 gene for pleiomorphic adenoma gene-like
             1 (PLAG-like 1, LOT1, ZAC, ZAC tumor suppressor). Contains
             two CpG islands, complete sequence
          Length = 101846

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   aggacaagagcaagaagaaa 195
             ||||||||||||||||||||
Sbjct: 58251 aggacaagagcaagaagaaa 58270

>gb|AC159208.2| Mus musculus BAC clone RP23-152K15 from chromosome 13, complete sequence
          Length = 195714

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 367    aagaacaccacaaacagacc 386
              ||||||||||||||||||||
Sbjct: 161081 aagaacaccacaaacagacc 161100

>emb|BX323844.7| Zebrafish DNA sequence from clone DKEY-29H18 in linkage group 7, complete
              sequence
          Length = 235079

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    tagtagatagaaacttcaaa 127
              ||||||||||||||||||||
Sbjct: 178981 tagtagatagaaacttcaaa 178962

>gb|AF357522.1| Pfiesteria piscicida clone PpcytbG3 mitochondrial cytochrome b
           pseudogene, partial sequence
          Length = 977

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 301 catcttcttcttggttataa 320
           ||||||||||||||||||||
Sbjct: 339 catcttcttcttggttataa 320

>gb|AF357521.1| Pfiesteria piscicida clone PpcytbG2 cytochrome b gene, partial cds;
           mitochondrial gene for mitochondrial product
          Length = 1861

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 301 catcttcttcttggttataa 320
           ||||||||||||||||||||
Sbjct: 339 catcttcttcttggttataa 320

>gb|AF357520.1| Pfiesteria piscicida clone PpcytbG1 cytochrome b gene, partial cds;
           mitochondrial gene for mitochondrial product
          Length = 3404

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 301 catcttcttcttggttataa 320
           ||||||||||||||||||||
Sbjct: 339 catcttcttcttggttataa 320

>gb|AC108132.2| Homo sapiens chromosome 16 clone RP11-404F5, complete sequence
          Length = 173198

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 193   aaactttggcatctcacaggcctg 216
             ||||||||||||| ||||||||||
Sbjct: 54133 aaactttggcatcacacaggcctg 54156

>gb|DP000052.1| Sus scrofa target 126 genomic scaffold
          Length = 432382

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 265    ccctttcaccactgttgcaa 284
              ||||||||||||||||||||
Sbjct: 234855 ccctttcaccactgttgcaa 234874

>gb|AC010255.9|AC010255 Homo sapiens chromosome 5 clone CTC-441N14, complete sequence
          Length = 215111

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 233   ctgtcaaacttaatattattacaa 256
             |||||| |||||||||||||||||
Sbjct: 85371 ctgtcacacttaatattattacaa 85348

>ref|NG_004178.1| Homo sapiens olfactory receptor, family 9, subfamily I, member 3
           pseudogene (OR9I3P) on chromosome 11
          Length = 1142

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 327 cagggtgatctgtgaagact 346
           ||||||||||||||||||||
Sbjct: 164 cagggtgatctgtgaagact 145

>tpg|BK004808.1| TPA: TPA_exp: Homo sapiens olfactory receptor OR11-225 pseudogene,
           complete sequence
          Length = 967

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 327 cagggtgatctgtgaagact 346
           ||||||||||||||||||||
Sbjct: 64  cagggtgatctgtgaagact 45

>tpg|BK004734.1| TPA: TPA_exp: Homo sapiens olfactory receptor OR11-227 pseudogene,
           complete sequence
          Length = 966

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 327 cagggtgatctgtgaagact 346
           ||||||||||||||||||||
Sbjct: 64  cagggtgatctgtgaagact 45

>gb|AC100791.15| Homo sapiens chromosome 17, clone RP11-353N14, complete sequence
          Length = 215313

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    ttgcacattccaacacccat 96
             ||||||||||||||||||||
Sbjct: 66959 ttgcacattccaacacccat 66940

>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome
          Length = 2616530

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     tttgtcaaaatgtagtagat 115
              ||||||||||||||||||||
Sbjct: 600279 tttgtcaaaatgtagtagat 600298

>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome
          Length = 2499279

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 96     tttgtcaaaatgtagtagat 115
              ||||||||||||||||||||
Sbjct: 708052 tttgtcaaaatgtagtagat 708071

>dbj|AB065732.1| Homo sapiens gene for seven transmembrane helix receptor, complete
           cds, isolate:CBRC7TM_295
          Length = 1102

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 327 cagggtgatctgtgaagact 346
           ||||||||||||||||||||
Sbjct: 264 cagggtgatctgtgaagact 245

>dbj|AP004247.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-659P15, complete
             sequence
          Length = 203084

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   cagggtgatctgtgaagact 346
             ||||||||||||||||||||
Sbjct: 71074 cagggtgatctgtgaagact 71093


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,096,547
Number of Sequences: 3902068
Number of extensions: 4096547
Number of successful extensions: 75309
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75222
Number of HSP's gapped (non-prelim): 87
length of query: 390
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 368
effective length of database: 17,147,199,772
effective search space: 6310169516096
effective search space used: 6310169516096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)