ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart57e08 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Z99496.1|HS509L4 Human DNA sequence from clone RP3-509L4 on chromosome 6q22.1-22.33 Contains part of the gene for serologically defined breast cancer antigen NY-BR-15 (LOC221312), the PLN gene for phospholamban (PLB), a bromodomain-containing 7 (BRD7) pseudogene and a synovial sarcoma X breakpoint gene pseudogene, complete sequence Length = 150290 Score = 46.1 bits (23), Expect = 0.025 Identities = 23/23 (100%) Strand = Plus / Plus Query: 61 taaacaacaaaaatattttttct 83 ||||||||||||||||||||||| Sbjct: 25121 taaacaacaaaaatattttttct 25143
>gb|AC125446.12| Mus musculus chromosome 14, clone RP24-501J23, complete sequence Length = 159722 Score = 44.1 bits (22), Expect = 0.098 Identities = 22/22 (100%) Strand = Plus / Minus Query: 62 aaacaacaaaaatattttttct 83 |||||||||||||||||||||| Sbjct: 127136 aaacaacaaaaatattttttct 127115
>gb|AC122907.4| Mus musculus BAC clone RP23-49I4 from chromosome 15, complete sequence Length = 233904 Score = 42.1 bits (21), Expect = 0.39 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 aacaaaaatattttttctata 86 ||||||||||||||||||||| Sbjct: 40199 aacaaaaatattttttctata 40179
>gb|AC123798.5| Mus musculus BAC clone RP24-334O8 from chromosome 3, complete sequence Length = 168467 Score = 42.1 bits (21), Expect = 0.39 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 aacaaaaatattttttctata 86 ||||||||||||||||||||| Sbjct: 150086 aacaaaaatattttttctata 150106
>gb|AC016946.15| Homo sapiens 3 BAC RP11-268F24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161123 Score = 42.1 bits (21), Expect = 0.39 Identities = 24/25 (96%) Strand = Plus / Plus Query: 67 acaaaaatattttttctatacagaa 91 ||||||||||| ||||||||||||| Sbjct: 31572 acaaaaatattatttctatacagaa 31596
>gb|AC119163.23| Mus musculus chromosome 3, clone RP24-527P22, complete sequence Length = 202675 Score = 42.1 bits (21), Expect = 0.39 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 aacaaaaatattttttctata 86 ||||||||||||||||||||| Sbjct: 191736 aacaaaaatattttttctata 191716
>emb|BX927184.5| Zebrafish DNA sequence from clone DKEY-125I20 in linkage group 5, complete sequence Length = 160345 Score = 42.1 bits (21), Expect = 0.39 Identities = 21/21 (100%) Strand = Plus / Minus Query: 78 ttttctatacagaatcatgat 98 ||||||||||||||||||||| Sbjct: 67236 ttttctatacagaatcatgat 67216
>gb|AC114761.3| Homo sapiens BAC clone RP11-354G23 from 4, complete sequence Length = 70709 Score = 42.1 bits (21), Expect = 0.39 Identities = 21/21 (100%) Strand = Plus / Minus Query: 72 aatattttttctatacagaat 92 ||||||||||||||||||||| Sbjct: 35871 aatattttttctatacagaat 35851
>gb|AC106718.4| Homo sapiens 3 BAC RP11-30H24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 132695 Score = 42.1 bits (21), Expect = 0.39 Identities = 24/25 (96%) Strand = Plus / Minus Query: 67 acaaaaatattttttctatacagaa 91 ||||||||||| ||||||||||||| Sbjct: 34434 acaaaaatattatttctatacagaa 34410
>emb|BX005029.13| Zebrafish DNA sequence from clone CH211-182D3 in linkage group 5, complete sequence Length = 128948 Score = 42.1 bits (21), Expect = 0.39 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 ttttctatacagaatcatgat 98 ||||||||||||||||||||| Sbjct: 89928 ttttctatacagaatcatgat 89948
>emb|AL135746.3|CNS01DVF Human chromosome 14 DNA sequence BAC R-325D8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 172800 Score = 42.1 bits (21), Expect = 0.39 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 taaacaacaaaaatatttttt 81 ||||||||||||||||||||| Sbjct: 138587 taaacaacaaaaatatttttt 138607
>emb|AL157688.4|CNS01RG0 Human chromosome 14 DNA sequence BAC R-594C13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 189918 Score = 42.1 bits (21), Expect = 0.39 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 taaacaacaaaaatatttttt 81 ||||||||||||||||||||| Sbjct: 179149 taaacaacaaaaatatttttt 179129
>gb|AC154514.2| Mus musculus BAC clone RP24-77G11 from chromosome 9, complete sequence Length = 188944 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 aaaatattttttctatacag 89 |||||||||||||||||||| Sbjct: 129676 aaaatattttttctatacag 129657
>gb|AC146199.2| Pan troglodytes BAC clone RP43-25F11 from 7, complete sequence Length = 186750 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 aaacaacaaaaatatttttt 81 |||||||||||||||||||| Sbjct: 134383 aaacaacaaaaatatttttt 134402
>emb|AL590482.11| Human DNA sequence from clone RP11-142J11 on chromosome 6 Contains the 3' end of a gene for a novel protein, complete sequence Length = 97255 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 aaaatattttttctatacag 89 |||||||||||||||||||| Sbjct: 9333 aaaatattttttctatacag 9352
>emb|AL096706.10|HSJ684F13 Human DNA sequence from clone RP4-684F13 on chromosome 10 Contains the 5' end of the NRG3 gene for neuregulin 3 and two CpG islands, complete sequence Length = 117230 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 taaacaacaaaaatattttt 80 |||||||||||||||||||| Sbjct: 26870 taaacaacaaaaatattttt 26851
>emb|AL033502.1|CAC38F10 C.albicans cosmid Ca38F10 Length = 39871 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 aaacaacaaaaatatttttt 81 |||||||||||||||||||| Sbjct: 30893 aaacaacaaaaatatttttt 30874
>gb|AC117444.6| Homo sapiens 3 BAC RP11-215L17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 104853 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 69 aaaaatattttttctatacagaat 92 |||||||||||| ||||||||||| Sbjct: 72033 aaaaatatttttgctatacagaat 72056
>gb|AC121342.6| Homo sapiens X BAC RP11-86A5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 118301 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 67 acaaaaatattttttctata 86 |||||||||||||||||||| Sbjct: 82449 acaaaaatattttttctata 82468
>gb|AC079033.12| Homo sapiens 12 BAC RP11-453L7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 150123 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 ttttctatacagaatcatga 97 |||||||||||||||||||| Sbjct: 25356 ttttctatacagaatcatga 25337
>gb|CP000123.1| Mycoplasma capricolum subsp. capricolum ATCC 27343, complete genome Length = 1010023 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 aaacaacaaaaatatttttt 81 |||||||||||||||||||| Sbjct: 969243 aaacaacaaaaatatttttt 969262 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 aaaaatattttttctatac 87 ||||||||||||||||||| Sbjct: 218858 aaaaatattttttctatac 218840
>gb|AC110377.5| Mus musculus BAC clone RP23-460A13 from chromosome 12, complete sequence Length = 196540 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 aaaaatattttttctataca 88 |||||||||||||||||||| Sbjct: 121216 aaaaatattttttctataca 121197
>emb|CR387523.1| Gallus gallus finished cDNA, clone ChEST504k13 Length = 1137 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 taaacaacaaaaatattttt 80 |||||||||||||||||||| Sbjct: 353 taaacaacaaaaatattttt 334
>gb|AC155303.2| Mus musculus BAC clone RP24-212A21 from chromosome 13, complete sequence Length = 156551 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gtaaacaacaaaaatatttt 79 |||||||||||||||||||| Sbjct: 117264 gtaaacaacaaaaatatttt 117245
>emb|BX005027.13| Zebrafish DNA sequence from clone DKEY-4C2 in linkage group 10, complete sequence Length = 241472 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 tttttctatacagaatcatg 96 |||||||||||||||||||| Sbjct: 61748 tttttctatacagaatcatg 61767
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 69 aaaaatattttttctatacagaat 92 ||||||||| |||||||||||||| Sbjct: 21551738 aaaaatattgtttctatacagaat 21551715
>gb|AC084445.1|AC084445 Caenorhabditis briggsae cosmid CB018A07, complete sequence Length = 62584 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 aaacaacaaaaatatttttt 81 |||||||||||||||||||| Sbjct: 25512 aaacaacaaaaatatttttt 25531
>gb|AC124287.10| Homo sapiens chromosome 17, clone RP13-991F5, complete sequence Length = 162180 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 aaacaacaaaaatatttttt 81 |||||||||||||||||||| Sbjct: 155175 aaacaacaaaaatatttttt 155156
>gb|AC124283.11| Homo sapiens chromosome 17, clone RP13-638C3, complete sequence Length = 143744 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 aaacaacaaaaatatttttt 81 |||||||||||||||||||| Sbjct: 22995 aaacaacaaaaatatttttt 22976
>gb|AC154252.1| Mus musculus BAC clone RP24-197M20 from chromosome 13, complete sequence Length = 176702 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 gtaaacaacaaaaatatttt 79 |||||||||||||||||||| Sbjct: 46242 gtaaacaacaaaaatatttt 46223
>emb|BX248245.10| Zebrafish DNA sequence from clone CH211-203M16 in linkage group 10, complete sequence Length = 78415 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 62 aaacaacaaaaatattttttctat 85 ||||||||||||| |||||||||| Sbjct: 29030 aaacaacaaaaattttttttctat 29053
>dbj|AP003838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1582_D10 Length = 103475 Score = 40.1 bits (20), Expect = 1.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 69 aaaaatattttttctatacagaat 92 ||||||||| |||||||||||||| Sbjct: 89522 aaaaatattgtttctatacagaat 89499
>emb|BX119986.8| Mouse DNA sequence from clone RP23-440J5 on chromosome X, complete sequence Length = 196937 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 aaacaacaaaaatatttttt 81 |||||||||||||||||||| Sbjct: 185334 aaacaacaaaaatatttttt 185315
>emb|Z33362.1|MCAAZ M.capricolum DNA for CONTIG MCAAZ Length = 1259 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 aaacaacaaaaatatttttt 81 |||||||||||||||||||| Sbjct: 751 aaacaacaaaaatatttttt 732
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 aacaaaaatattttttctat 85 |||||||||||||||||||| Sbjct: 2250501 aacaaaaatattttttctat 2250520
>emb|AL928883.19| Mouse DNA sequence from clone RP23-60E18 on chromosome 2, complete sequence Length = 208470 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 taaacaacaaaaatattttt 80 |||||||||||||||||||| Sbjct: 162617 taaacaacaaaaatattttt 162598
>gb|BC088940.1| Xenopus laevis hypothetical LOC496343, mRNA (cDNA clone MGC:85165 IMAGE:6870378), complete cds Length = 1048 Score = 40.1 bits (20), Expect = 1.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 taaacaacaaaaatattttt 80 |||||||||||||||||||| Sbjct: 1032 taaacaacaaaaatattttt 1013
>gb|AC154391.1| Medicago truncatula chromosome 7 BAC clone mth2-143d17, complete sequence Length = 123865 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 60 gtaaacaacaaaaatattt 78 ||||||||||||||||||| Sbjct: 75654 gtaaacaacaaaaatattt 75636
>ref|NM_112644.1| Arabidopsis thaliana ATCHX19; monovalent cation:proton antiporter AT3G17630 (ATCHX19) mRNA, complete cds Length = 2574 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 cagaatcatgatcttttct 105 ||||||||||||||||||| Sbjct: 1522 cagaatcatgatcttttct 1504
>gb|AC121821.3| Mus musculus chromosome 18 clone RP23-461O23, complete sequence Length = 175131 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 62 aaacaacaaaaatattttt 80 ||||||||||||||||||| Sbjct: 59127 aaacaacaaaaatattttt 59109
>ref|NM_001016329.2| Xenopus tropicalis hypothetical protein LOC549083 (LOC549083), mRNA Length = 1065 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 62 aaacaacaaaaatattttt 80 ||||||||||||||||||| Sbjct: 1042 aaacaacaaaaatattttt 1024
>gb|AE014834.1| Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence Length = 253001 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 62 aaacaacaaaaatattttttcta 84 |||||| |||||||||||||||| Sbjct: 244230 aaacaaaaaaaatattttttcta 244252
>gb|AC157936.5| Mus musculus chromosome 5, clone RP24-246K15, complete sequence Length = 178000 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 atacagaatcatgatcttt 102 ||||||||||||||||||| Sbjct: 37739 atacagaatcatgatcttt 37721
>gb|AC161484.4| Mus musculus chromosome 5, clone RP23-6C10, complete sequence Length = 249620 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 atacagaatcatgatcttt 102 ||||||||||||||||||| Sbjct: 227748 atacagaatcatgatcttt 227730
>gb|AC113099.12| Mus musculus chromosome 8, clone RP23-314N20, complete sequence Length = 199694 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 69 aaaaatattttttctatacagaa 91 |||||||| |||||||||||||| Sbjct: 97702 aaaaatatattttctatacagaa 97680
>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome Length = 3481691 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 82 ctatacagaatcatgatct 100 ||||||||||||||||||| Sbjct: 2315167 ctatacagaatcatgatct 2315149
>gb|AC119215.6| Mus musculus chromosome 5, clone RP24-199K22, complete sequence Length = 186611 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 atacagaatcatgatcttt 102 ||||||||||||||||||| Sbjct: 169867 atacagaatcatgatcttt 169849
>gb|AC114512.5| Rattus norvegicus 5 BAC CH230-5N9 (Children's Hospital Oakland Research Institute) complete sequence Length = 247588 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 aaacaacaaaaatattttt 80 ||||||||||||||||||| Sbjct: 214058 aaacaacaaaaatattttt 214076
>gb|AC104873.7| Mus musculus chromosome 1, clone RP23-434G18, complete sequence Length = 205266 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 61 taaacaacaaaaatatttt 79 ||||||||||||||||||| Sbjct: 126672 taaacaacaaaaatatttt 126690
>gb|AC140205.2| Mus musculus BAC clone RP24-344F2 from chromosome 8, complete sequence Length = 140215 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 69 aaaaatattttttctatacagaa 91 |||||||| |||||||||||||| Sbjct: 101691 aaaaatatattttctatacagaa 101713
>gb|AC110564.7| Mus musculus chromosome 12, clone RP23-292A16, complete sequence Length = 211576 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 aacaacaaaaatatttttt 81 ||||||||||||||||||| Sbjct: 133277 aacaacaaaaatatttttt 133259
>gb|AY363103.1|AY363102S2 Mus musculus diadenosine triphosphate hydrolase (Fhit) gene, exons 6 through 10 and partial cds Length = 688489 Score = 38.2 bits (19), Expect = 6.0 Identities = 25/27 (92%) Strand = Plus / Minus Query: 62 aaacaacaaaaatattttttctataca 88 |||||| |||||| ||||||||||||| Sbjct: 136409 aaacaaaaaaaatgttttttctataca 136383
>gb|AC007610.10| Homo sapiens chromosome 16 clone RP11-429P3, complete sequence Length = 214786 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 7 taatttcttgcacatgcta 25 ||||||||||||||||||| Sbjct: 60823 taatttcttgcacatgcta 60805
>gb|AE014305.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 2 of 11 of the complete sequence Length = 613322 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 aaacaacaaaaatattttt 80 ||||||||||||||||||| Sbjct: 460541 aaacaacaaaaatattttt 460559
>gb|AC129314.4| Mus musculus BAC clone RP23-365D12 from chromosome 1, complete sequence Length = 200605 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 61 taaacaacaaaaatattttttct 83 ||||||||||||||||| ||||| Sbjct: 182030 taaacaacaaaaatattatttct 182052
>gb|AC004690.2| Homo sapiens PAC clone RP4-630C24 from 7, complete sequence Length = 142123 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 73 atattttttctatacagaa 91 ||||||||||||||||||| Sbjct: 132063 atattttttctatacagaa 132045
>gb|AC113287.8| Mus musculus chromosome 3, clone RP23-412L13, complete sequence Length = 214444 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 67 acaaaaatattttttctat 85 ||||||||||||||||||| Sbjct: 128869 acaaaaatattttttctat 128887
>gb|AC124120.5| Mus musculus chromosome 1, clone RP24-64M13, complete sequence Length = 242227 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 aaacaacaaaaatattttt 80 ||||||||||||||||||| Sbjct: 219821 aaacaacaaaaatattttt 219839
>gb|AC144799.3| Mus musculus chromosome 18 clone RP24-299J7, complete sequence Length = 192272 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 aaacaacaaaaatattttt 80 ||||||||||||||||||| Sbjct: 40452 aaacaacaaaaatattttt 40470
>emb|BX537254.7| Human DNA sequence from clone RP6-74O6 on chromosome 1 Contains the 3' end of the putative G-protein coupled receptor (SH120), a novel gene and four CpG islands, complete sequence Length = 121309 Score = 38.2 bits (19), Expect = 6.0 Identities = 25/27 (92%) Strand = Plus / Minus Query: 60 gtaaacaacaaaaatattttttctata 86 |||||||||||||| | |||||||||| Sbjct: 27330 gtaaacaacaaaaacagtttttctata 27304
>emb|BX511042.2| Human DNA sequence from clone RP11-300L20 on chromosome 1 Contains part of the gene for putative G-protein coupled receptor SH120, complete sequence Length = 47106 Score = 38.2 bits (19), Expect = 6.0 Identities = 25/27 (92%) Strand = Plus / Plus Query: 60 gtaaacaacaaaaatattttttctata 86 |||||||||||||| | |||||||||| Sbjct: 32217 gtaaacaacaaaaacagtttttctata 32243
>emb|AL929288.4| Human DNA sequence from clone RP11-669M2 on chromosome 1 Contains the 3' end of a novel gene and apolipoprotein L 3 (APOL3) pseudogene, complete sequence Length = 172898 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 aacaacaaaaatatttttt 81 ||||||||||||||||||| Sbjct: 122911 aacaacaaaaatatttttt 122929
>emb|AL591925.11| Human DNA sequence from clone RP13-453C5 on chromosome 13, complete sequence Length = 21298 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 taaacaacaaaaatatttt 79 ||||||||||||||||||| Sbjct: 20063 taaacaacaaaaatatttt 20045
>emb|AL590002.7| Human DNA sequence from clone RP1-177A13 on chromosome 6 Contains an HSPC163 protein (HSPC163) pseudogene, complete sequence Length = 54865 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 taaacaacaaaaatatttt 79 ||||||||||||||||||| Sbjct: 40766 taaacaacaaaaatatttt 40748
>emb|AL356472.17| Human DNA sequence from clone RP11-344B24 on chromosome 9 Contains the 5' end of the BAG1 gene for BCL2-associated athanogene, a novel gene (HSPC177), the 5' end of the NFX1 gene for nuclear transcription factor, X-box binding 1 and 2 CpG islands, complete sequence Length = 98593 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 tttttctatacagaatcat 95 ||||||||||||||||||| Sbjct: 26613 tttttctatacagaatcat 26595
>emb|AL356432.17| Human DNA sequence from clone RP11-325O24 on chromosome 6 Contains a novel pseudogene, a pseudogene similar to part of transducin (beta)-like 1X-linked TBL1X and the 3' end of the C6orf190 gene, complete sequence Length = 170136 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 aacaaaaatattttttcta 84 ||||||||||||||||||| Sbjct: 28342 aacaaaaatattttttcta 28360
>emb|AL356004.9| Human DNA sequence from clone RP11-94I2 on chromosome 1 Contains the 3' end of the gene for a novel protein similar to putative G-protein coupled receptor SH120, the gene for a novel protein similar to PDZ domain containing 1 PDZK1, a novel gene, a phosphodiesterase 4D interacting protein (myomegalin) (PDE4DIP) pseudogene and three CpG islands, complete sequence Length = 166098 Score = 38.2 bits (19), Expect = 6.0 Identities = 25/27 (92%) Strand = Plus / Minus Query: 60 gtaaacaacaaaaatattttttctata 86 |||||||||||||| | |||||||||| Sbjct: 6409 gtaaacaacaaaaacagtttttctata 6383
>emb|AL354763.17| Human DNA sequence from clone RP11-357L1 on chromosome 13 Contains an ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G variant 1 (ATP6V1G1) pseudogene, complete sequence Length = 192963 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 aaacaacaaaaatattttt 80 ||||||||||||||||||| Sbjct: 187096 aaacaacaaaaatattttt 187114
>emb|AL137119.26| Human DNA sequence from clone RP11-110K18 on chromosome 13q12.1-12.3 Contains the 5' end of the ZNF198 gene for zinc finger protein 198, an HIV-1 rev binding protein 2 (HRB2) (RIP-1) pseudogene and a CpG island, complete sequence Length = 142494 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 taaacaacaaaaatatttt 79 ||||||||||||||||||| Sbjct: 765 taaacaacaaaaatatttt 747
>gb|AC161432.5| Mus musculus chromosome 1, clone RP23-453N14, complete sequence Length = 199303 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 aaacaacaaaaatattttt 80 ||||||||||||||||||| Sbjct: 126956 aaacaacaaaaatattttt 126974
>emb|AL445564.1|MPULM02 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 2/3 Length = 321250 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 aaacaacaaaaatattttt 80 ||||||||||||||||||| Sbjct: 208646 aaacaacaaaaatattttt 208664
>emb|AL604002.8| Mouse DNA sequence from clone RP23-386F6 on chromosome 11, complete sequence Length = 142134 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 aacaacaaaaatatttttt 81 ||||||||||||||||||| Sbjct: 4180 aacaacaaaaatatttttt 4162
>emb|CR759830.8| Zebrafish DNA sequence from clone DKEYP-79F12 in linkage group 23, complete sequence Length = 196033 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 aaaaatattttttctatac 87 ||||||||||||||||||| Sbjct: 26637 aaaaatattttttctatac 26655
>gb|AC093010.7| Homo sapiens 3 BAC RP11-553L6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161077 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 61 taaacaacaaaaatattttttct 83 ||||||||| ||||||||||||| Sbjct: 77257 taaacaacagaaatattttttct 77235
>gb|AC022796.5| Homo sapiens chromosome 11, clone RP11-277K23, complete sequence Length = 115454 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 aaacaacaaaaatattttt 80 ||||||||||||||||||| Sbjct: 111059 aaacaacaaaaatattttt 111077
>gb|AC026477.3| Homo sapiens chromosome 5 clone RP11-94D20, complete sequence Length = 70380 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 70 aaaatattttttctataca 88 ||||||||||||||||||| Sbjct: 8820 aaaatattttttctataca 8802
>gb|AC021763.10| Homo sapiens chromosome 18, clone RP11-56O21, complete sequence Length = 158405 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 aaacaacaaaaatattttt 80 ||||||||||||||||||| Sbjct: 7849 aaacaacaaaaatattttt 7867
>gb|AC118647.4| Homo sapiens chromosome 18, clone RP11-474O19, complete sequence Length = 71808 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 aaacaacaaaaatattttt 80 ||||||||||||||||||| Sbjct: 63730 aaacaacaaaaatattttt 63748
>emb|BX572634.7| Zebrafish DNA sequence from clone DKEY-6H1 in linkage group 11, complete sequence Length = 202461 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 caaaaatattttttctata 86 ||||||||||||||||||| Sbjct: 107916 caaaaatattttttctata 107934
>gb|AC122544.1| Genomic sequence for Lycopersicon esculentum, clone L136C6, complete sequence Length = 121637 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 67 acaaaaatattttttctat 85 ||||||||||||||||||| Sbjct: 80094 acaaaaatattttttctat 80076
>gb|AC118344.2| Homo sapiens chromosome 19 clone CTC-425O23, complete sequence Length = 178335 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 61 taaacaacaaaaatatttt 79 ||||||||||||||||||| Sbjct: 75886 taaacaacaaaaatatttt 75904
>gb|AC104183.2| Homo sapiens chromosome 3 clone RP11-180N14, complete sequence Length = 169709 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 61 taaacaacaaaaatattttttct 83 |||||||||||||||| |||||| Sbjct: 87344 taaacaacaaaaatatattttct 87322
>gb|AC018642.7| Homo sapiens chromosome 7 clone RP11-329I5, complete sequence Length = 194523 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 62 aaacaacaaaaatattttt 80 ||||||||||||||||||| Sbjct: 10908 aaacaacaaaaatattttt 10890
>gb|AC007397.21| Homo sapiens 12p13 BAC RPCI11-439G16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 104630 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 atacagaatcatgatcttt 102 ||||||||||||||||||| Sbjct: 22341 atacagaatcatgatcttt 22323
>gb|AC092540.4| Homo sapiens BAC clone RP11-190E23 from 4, complete sequence Length = 133801 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 69 aaaaatattttttctatacagaa 91 ||||||||||||| ||||||||| Sbjct: 58191 aaaaatattttttatatacagaa 58169
>gb|AC092503.2| Homo sapiens chromosome 3 clone RP11-539L2, complete sequence Length = 195568 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 61 taaacaacaaaaatattttttct 83 ||||||||| ||||||||||||| Sbjct: 105724 taaacaacagaaatattttttct 105702
>gb|AC092782.2| Homo sapiens chromosome 1 clone RP11-411G13, complete sequence Length = 155355 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 aaaaatattttttctatac 87 ||||||||||||||||||| Sbjct: 142324 aaaaatattttttctatac 142306
>gb|AC092804.2| Homo sapiens chromosome 1 clone RP11-81E23, complete sequence Length = 161398 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 aaacaacaaaaatattttt 80 ||||||||||||||||||| Sbjct: 3693 aaacaacaaaaatattttt 3711
>gb|AC092806.2| Homo sapiens chromosome 1 clone RP11-156F12, complete sequence Length = 153527 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 aaaaatattttttctatac 87 ||||||||||||||||||| Sbjct: 33713 aaaaatattttttctatac 33695
>emb|BX537350.25| Zebrafish DNA sequence from clone CH211-257F16 in linkage group 1, complete sequence Length = 186493 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 61 taaacaacaaaaatattttttct 83 ||||||||||||||| ||||||| Sbjct: 174365 taaacaacaaaaatactttttct 174343
>gb|AC027329.4| Homo sapiens chromosome 5 clone CTD-2143A15, complete sequence Length = 128683 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 70 aaaatattttttctataca 88 ||||||||||||||||||| Sbjct: 108196 aaaatattttttctataca 108178
>emb|AL928725.18| Zebrafish DNA sequence from clone CH211-13O20 in linkage group 23, complete sequence Length = 199910 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 60 gtaaacaacaaaaatattt 78 ||||||||||||||||||| Sbjct: 100417 gtaaacaacaaaaatattt 100399
>gb|AC159542.8| Mus musculus 10 BAC RP23-137B10 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 198525 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 70 aaaatattttttctataca 88 ||||||||||||||||||| Sbjct: 84689 aaaatattttttctataca 84707
>gb|AC134864.5| Mus musculus BAC clone RP24-132O18 from chromosome 15, complete sequence Length = 149797 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 4 taataatttcttgcacatg 22 ||||||||||||||||||| Sbjct: 41816 taataatttcttgcacatg 41798
>gb|AC154711.2| Mus musculus BAC clone RP24-359E16 from chromosome 16, complete sequence Length = 199681 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 taaacaacaaaaatatttt 79 ||||||||||||||||||| Sbjct: 70470 taaacaacaaaaatatttt 70452
>dbj|AK040226.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430079G23 product:unclassifiable, full insert sequence Length = 3169 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 aataatttcttgcacatgc 23 ||||||||||||||||||| Sbjct: 1951 aataatttcttgcacatgc 1933
>tpg|BK000023.1| TPA: TPA_exp: Mus musculus nuclear pore complex-associated intranuclear coiled-coil protein TPR (Tpr) gene, complete cds Length = 59413 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 62 aaacaacaaaaatattttt 80 ||||||||||||||||||| Sbjct: 14600 aaacaacaaaaatattttt 14582
>emb|AL929509.15| Zebrafish DNA sequence from clone CH211-165I22 in linkage group 1, complete sequence Length = 139628 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 61 taaacaacaaaaatattttttct 83 ||||||||||||||| ||||||| Sbjct: 43085 taaacaacaaaaatactttttct 43063
>emb|BX294126.10| Zebrafish DNA sequence from clone DKEYP-35B8 in linkage group 2, complete sequence Length = 179476 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 73 atattttttctatacagaa 91 ||||||||||||||||||| Sbjct: 125722 atattttttctatacagaa 125704
>emb|BX649392.6| Zebrafish DNA sequence from clone DKEY-84J12 in linkage group 5, complete sequence Length = 197352 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 aaacaacaaaaatattttt 80 ||||||||||||||||||| Sbjct: 63212 aaacaacaaaaatattttt 63230
>ref|XM_397381.2| PREDICTED: Apis mellifera similar to ENSANGP00000003705 (LOC413944), mRNA Length = 3085 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 aacaacaaaaatatttttt 81 ||||||||||||||||||| Sbjct: 6 aacaacaaaaatatttttt 24
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 aaaaatattttttctatac 87 ||||||||||||||||||| Sbjct: 26357227 aaaaatattttttctatac 26357209
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 aaaaatattttttctatac 87 ||||||||||||||||||| Sbjct: 21425487 aaaaatattttttctatac 21425505
>gb|AC008029.3|AC008029 Drosophila melanogaster, chromosome 3R, region 84D-84D, BAC clone BACR01C11, complete sequence Length = 176991 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 aaacaacaaaaatattttt 80 ||||||||||||||||||| Sbjct: 93237 aaacaacaaaaatattttt 93255
>gb|AC007597.3|AC007597 Homo sapiens chromosome 16 clone RP11-137H10, complete sequence Length = 192814 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 7 taatttcttgcacatgcta 25 ||||||||||||||||||| Sbjct: 177837 taatttcttgcacatgcta 177819
>gb|AC009783.9|AC009783 Homo sapiens chromosome 7 clone RP11-14M12, complete sequence Length = 169326 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 aaacaacaaaaatattttt 80 ||||||||||||||||||| Sbjct: 100265 aaacaacaaaaatattttt 100283
>dbj|AP003267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0496H05 Length = 147817 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 aaaaatattttttctatac 87 ||||||||||||||||||| Sbjct: 147425 aaaaatattttttctatac 147443
>gb|AC007366.4|AC007366 Homo sapiens BAC clone RP11-501G22 from Xq23, complete sequence Length = 61434 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 taaacaacaaaaatatttt 79 ||||||||||||||||||| Sbjct: 2024 taaacaacaaaaatatttt 2006
>gb|AE014848.1| Plasmodium falciparum 3D7 chromosome 12, section 5 of 9 of the complete sequence Length = 250707 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 taaacaacaaaaatatttt 79 ||||||||||||||||||| Sbjct: 193340 taaacaacaaaaatatttt 193322
>gb|AC012089.13|AC012089 Homo sapiens 3 BAC RP11-758L3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 150429 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 61 taaacaacaaaaatattttttct 83 |||||||||||||||| |||||| Sbjct: 130298 taaacaacaaaaatatattttct 130320
>emb|BX001055.11| Zebrafish DNA sequence from clone CH211-87M5 in linkage group 9, complete sequence Length = 194418 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 87 cagaatcatgatcttttct 105 ||||||||||||||||||| Sbjct: 25685 cagaatcatgatcttttct 25703
>dbj|AP003075.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0468H06 Length = 155031 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 aaaaatattttttctatac 87 ||||||||||||||||||| Sbjct: 66873 aaaaatattttttctatac 66891
>emb|BX276095.7| Zebrafish DNA sequence from clone CH211-225H17, complete sequence Length = 197554 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 cagaatcatgatcttttct 105 ||||||||||||||||||| Sbjct: 135624 cagaatcatgatcttttct 135606
>gb|AY926475.1| Arabidopsis thaliana cation/H+ exchanger (CHX19) mRNA, complete cds Length = 2403 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 cagaatcatgatcttttct 105 ||||||||||||||||||| Sbjct: 1351 cagaatcatgatcttttct 1333
>emb|AL929225.6| Zebrafish DNA sequence from clone CH211-250A24, complete sequence Length = 151067 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 aacaacaaaaatatttttt 81 ||||||||||||||||||| Sbjct: 1862 aacaacaaaaatatttttt 1844
>dbj|AB022219.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MKP6 Length = 83233 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 87 cagaatcatgatcttttct 105 ||||||||||||||||||| Sbjct: 51702 cagaatcatgatcttttct 51684
>dbj|AB016882.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MZA15 Length = 79995 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 65 caacaaaaatattttttct 83 ||||||||||||||||||| Sbjct: 64338 caacaaaaatattttttct 64320
>gb|AC154533.2| Mus musculus BAC clone RP23-469N16 from 16, complete sequence Length = 187213 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 72 aatattttttctatacaga 90 ||||||||||||||||||| Sbjct: 79513 aatattttttctatacaga 79495
>emb|BX936290.16| Zebrafish DNA sequence from clone DKEY-188L8 in linkage group 22, complete sequence Length = 79381 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 61 taaacaacaaaaatattttttct 83 ||||||||||||||| ||||||| Sbjct: 65573 taaacaacaaaaatactttttct 65595
>gb|AE003672.4| Drosophila melanogaster chromosome 3R, section 12 of 118 of the complete sequence Length = 301379 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 aaacaacaaaaatattttt 80 ||||||||||||||||||| Sbjct: 144646 aaacaacaaaaatattttt 144664
>emb|AL138995.5|CNS01DX0 Human chromosome 14 DNA sequence BAC C-2588E21 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 163312 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 aaacaacaaaaatattttt 80 ||||||||||||||||||| Sbjct: 78014 aaacaacaaaaatattttt 78032
>emb|CR761427.2| Xenopus tropicalis finished cDNA, clone TEgg013b21 Length = 1065 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 62 aaacaacaaaaatattttt 80 ||||||||||||||||||| Sbjct: 1042 aaacaacaaaaatattttt 1024
>emb|BX004786.8| Zebrafish DNA sequence from clone DKEY-1P6 in linkage group 24, complete sequence Length = 178232 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 aacaacaaaaatatttttt 81 ||||||||||||||||||| Sbjct: 178094 aacaacaaaaatatttttt 178076
>gb|AF063866.1|AF063866 Melanoplus sanguinipes entomopoxvirus, complete genome Length = 236120 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 68 caaaaatattttttctata 86 ||||||||||||||||||| Sbjct: 193599 caaaaatattttttctata 193581
>dbj|AP001982.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-344F5, complete sequence Length = 137996 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 61 taaacaacaaaaatattttttct 83 |||||||||||||| |||||||| Sbjct: 132462 taaacaacaaaaattttttttct 132484
>dbj|AP001924.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-166D19, complete sequence Length = 190360 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 61 taaacaacaaaaatattttttct 83 |||||||||||||| |||||||| Sbjct: 29275 taaacaacaaaaattttttttct 29297
>emb|CR962130.2| Medicago truncatula chromosome 5 clone mte1-63h20, COMPLETE SEQUENCE Length = 115239 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 55 acctcgtaaacaacaaaaa 73 ||||||||||||||||||| Sbjct: 27789 acctcgtaaacaacaaaaa 27807
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 aaaaatattttttctatac 87 ||||||||||||||||||| Sbjct: 26285397 aaaaatattttttctatac 26285379
>emb|AL731885.4|CNS08C8P Oryza sativa chromosome 12, . BAC OSJNBb0016A10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 133978 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 aaaaatattttttctatac 87 ||||||||||||||||||| Sbjct: 121211 aaaaatattttttctatac 121193
>emb|AL845347.4|CNS08CB9 Oryza sativa chromosome 12, . BAC OSJNBb0101I10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131689 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 aaaaatattttttctatac 87 ||||||||||||||||||| Sbjct: 71501 aaaaatattttttctatac 71483
>emb|AL954813.14| Mouse DNA sequence from clone RP24-541E15 on chromosome 4, complete sequence Length = 140383 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 aacaaaaatattttttcta 84 ||||||||||||||||||| Sbjct: 7758 aacaaaaatattttttcta 7776
>emb|AJ298076.2|MMU298076 Mus musculus partial Tpr gene for nuclear pore complex-associated protein Tpr and partial FLJ20505 gene Length = 32260 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 62 aaacaacaaaaatattttt 80 ||||||||||||||||||| Sbjct: 14600 aaacaacaaaaatattttt 14582
>gb|AC154191.1| Mus musculus BAC clone RP24-70A10 from 16, complete sequence Length = 143978 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 taaacaacaaaaatatttt 79 ||||||||||||||||||| Sbjct: 138884 taaacaacaaaaatatttt 138866
>gb|AC147128.3| Mus musculus BAC clone RP24-178K6 from 1, complete sequence Length = 158485 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 61 taaacaacaaaaatattttttct 83 ||||||||||||||||| ||||| Sbjct: 13095 taaacaacaaaaatattatttct 13117
>emb|AL935192.10| Zebrafish DNA sequence from clone CH211-252B2, complete sequence Length = 192649 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 atattttttctatacagaa 91 ||||||||||||||||||| Sbjct: 107869 atattttttctatacagaa 107887
>gb|AC109464.2| Homo sapiens chromosome 5 clone RP11-284A20, complete sequence Length = 161641 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 61 taaacaacaaaaatattttttct 83 |||||||||||||||| |||||| Sbjct: 92234 taaacaacaaaaatatattttct 92256
>dbj|AP007297.1| Lotus japonicus genomic DNA, clone:LjT02G13, TM0489a, complete sequence Length = 72531 Score = 38.2 bits (19), Expect = 6.0 Identities = 22/23 (95%) Strand = Plus / Minus Query: 66 aacaaaaatattttttctataca 88 |||||||||||||||| |||||| Sbjct: 8870 aacaaaaatattttttttataca 8848
>dbj|AP006428.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT04J15, TM0321, complete sequence Length = 127049 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 cgtaaacaacaaaaatatt 77 ||||||||||||||||||| Sbjct: 41681 cgtaaacaacaaaaatatt 41663
>gb|AC153506.4| Mus musculus 10 BAC RP23-99K2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 185656 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 70 aaaatattttttctataca 88 ||||||||||||||||||| Sbjct: 175158 aaaatattttttctataca 175176
>dbj|AP004950.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT42E10, TM0123, complete sequence Length = 79601 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 70 aaaatattttttctataca 88 ||||||||||||||||||| Sbjct: 42441 aaaatattttttctataca 42459
>emb|AL732320.8| Mouse DNA sequence from clone RP23-140D16 on chromosome 2, complete sequence Length = 192010 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 aataatttcttgcacatgc 23 ||||||||||||||||||| Sbjct: 125624 aataatttcttgcacatgc 125606
>emb|AL672304.8| Mouse DNA sequence from clone RP23-3G8 on chromosome X, complete sequence Length = 197592 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 62 aaacaacaaaaatattttt 80 ||||||||||||||||||| Sbjct: 184348 aaacaacaaaaatattttt 184330
>emb|AL672170.11| Mouse DNA sequence from clone RP23-435C17 on chromosome X, complete sequence Length = 205023 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 aaacaacaaaaatattttt 80 ||||||||||||||||||| Sbjct: 46092 aaacaacaaaaatattttt 46110
>emb|AL672049.13| Mouse DNA sequence from clone RP23-188K3 on chromosome 11, complete sequence Length = 224034 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 ctaggggcaatcaccaatc 48 ||||||||||||||||||| Sbjct: 221744 ctaggggcaatcaccaatc 221726
>emb|AL808024.4| Mouse DNA sequence from clone RP23-144L10 on chromosome X, complete sequence Length = 186528 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 61 taaacaacaaaaatatttt 79 ||||||||||||||||||| Sbjct: 167751 taaacaacaaaaatatttt 167769
>emb|AL589696.10| Mouse DNA sequence from clone RP23-454M13 on chromosome 15, complete sequence Length = 207431 Score = 38.2 bits (19), Expect = 6.0 Identities = 25/27 (92%) Strand = Plus / Plus Query: 62 aaacaacaaaaatattttttctataca 88 |||||| |||||| ||||||||||||| Sbjct: 24244 aaacaaaaaaaatgttttttctataca 24270
>emb|AL731779.12| Mouse DNA sequence from clone RP23-48D8 on chromosome 2, complete sequence Length = 168889 Score = 38.2 bits (19), Expect = 6.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 aacaaaaatattttttcta 84 ||||||||||||||||||| Sbjct: 109578 aacaaaaatattttttcta 109560 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,399,187 Number of Sequences: 3902068 Number of extensions: 2399187 Number of successful extensions: 240601 Number of sequences better than 10.0: 147 Number of HSP's better than 10.0 without gapping: 147 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 239643 Number of HSP's gapped (non-prelim): 958 length of query: 129 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 108 effective length of database: 17,151,101,840 effective search space: 1852318998720 effective search space used: 1852318998720 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
