ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart57d08 |
|---|---|
| Clone Library Name | barley_pub |
>SPE1_DIACA (Q96412) Arginine decarboxylase (EC 4.1.1.19) (ARGDC) (ADC)| Length = 725 Score = 36.2 bits (82), Expect = 0.040 Identities = 25/89 (28%), Positives = 47/89 (52%) Frame = -3 Query: 307 EVYGKVQSVPGRIMHVVRGVWCSC*RYSGRLRCKCVCCLH*VMYEISWLGLIQFGLLDWI 128 EV G+ +S+ M RG + SC YSG L+ +CV +++ LG+ Q +D + Sbjct: 438 EVKGEYRSLTAAAM---RGEYESCLMYSGMLKQRCV-----ELFKDGCLGMEQLAAVDGL 489 Query: 127 LHTYTHSFSVLLGVCTLRFS*SSTIYTNV 41 + + V GVCT ++ + +++T++ Sbjct: 490 CELVSKALGVADGVCT--YNVNLSVFTSI 516
>YJBC_SCHPO (O74949) Hypothetical protein C553.12c in chromosome III| Length = 521 Score = 33.5 bits (75), Expect = 0.26 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = -3 Query: 184 VMYEISWLGLIQFGLL--DWILHTYTHSFSVLLGVCTLRFS*SSTIYTNVLY 35 +MY SW G + L WIL+T THS++ L+ V L F + +Y LY Sbjct: 299 IMYVYSWTGTVSLCNLVSSWILNTKTHSYA-LVTVFKLYFELTLQVYVRNLY 349
>OPSB_ASTFA (P51472) Blue-sensitive opsin (Blue cone photoreceptor pigment)| Length = 355 Score = 32.7 bits (73), Expect = 0.45 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = -3 Query: 172 ISWLGLIQFGLLDWILHTYTHSFSVLLGVCTLRFS*SSTIYTNVLYHFI 26 + WL F L W++ SF + LG FS +ST+Y V+Y F+ Sbjct: 268 VCWLPYASFAL--WVVFNRGQSFDLRLGTIPSCFSKASTVYNPVIYVFM 314
>MAL11_YEAST (P53048) General alpha-glucoside permease (Maltose permease MAL11)| (Maltose transport protein MAL11) Length = 616 Score = 32.0 bits (71), Expect = 0.76 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 8/65 (12%) Frame = -2 Query: 236 LTLQW*ITV*MCLLSS-------LGYV*DFLVGPYT-IRIIGLDSAYIYTLIFCTSGSMY 81 +T QW I + MC+L Y+ +F+ YT I +GL +AYI+ L +C S +M Sbjct: 151 ITSQWQIGLNMCVLCGEMIGLQITTYMVEFMGNRYTMITALGLLTAYIFILYYCKSLAMI 210 Query: 80 SQIQL 66 + Q+ Sbjct: 211 AVGQI 215
>FTSK_CORGL (Q8NP53) DNA translocase ftsK| Length = 921 Score = 30.4 bits (67), Expect = 2.2 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 12/46 (26%) Frame = +2 Query: 350 SSLTVSAHADG------------GAAVWSATGGIPGFGVADVVELA 451 +S V HADG GAAVW GG G +AD+V LA Sbjct: 59 TSAYVEEHADGIALSLVGIAIVLGAAVWLGIGGPIGTFIADIVHLA 104
>PRMA_HELHP (Q7VHY7) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11| Mtase) Length = 317 Score = 29.6 bits (65), Expect = 3.8 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = -1 Query: 150 NSDYWIGFCIHIHTHFLYFWEYVLSDSVKVVPYTQMY 40 N+ +GFC HI F Y W DS++ V + Y Sbjct: 101 NTQDSVGFCYHIEEKFNYDWIKAYQDSIEPVQCGRFY 137
>L2GL1_HUMAN (Q15334) Lethal(2) giant larvae protein homolog 1 (LLGL) (Human| homolog to the D-lgl gene) (Hugl-1) (DLG4) Length = 1062 Score = 28.9 bits (63), Expect = 6.4 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +2 Query: 350 SSLTVSAHADGGAAVWSATGG 412 SS VS+H+DG AVWS G Sbjct: 250 SSTVVSSHSDGSYAVWSVDAG 270
>CD68_MOUSE (P31996) Macrosialin precursor (CD68 antigen)| Length = 326 Score = 28.9 bits (63), Expect = 6.4 Identities = 20/73 (27%), Positives = 28/73 (38%) Frame = +1 Query: 157 GPTRKSHT*PSEDSKHIYTVIYHCNVNKNTTLHELHA*SALERTEPSRKPPAPSSLTVSA 336 GPT +H P+ + H I H V+ T S+ P PP+PS + A Sbjct: 68 GPTTVTHN-PATTTSHGNATISHATVSPTTNGTATSPRSSTVGPHPGPPPPSPSPRSKGA 126 Query: 337 HASAELLNCKCPC 375 + N PC Sbjct: 127 LGNYTWANGSQPC 139
>CLD12_PONPY (Q5R9K1) Claudin-12| Length = 244 Score = 28.5 bits (62), Expect = 8.4 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 8/72 (11%) Frame = -3 Query: 262 VVRGVWCSC*RYSGRLRCKCVCCLH*VMYEISW--------LGLIQFGLLDWILHTYTHS 107 V G+W C RY G C +MY+ +W L ++QF L +L Sbjct: 50 VYTGLWVKCARYDGSSDC--------LMYDTTWYSSVDQLDLRVLQFALPLSMLIAMGAL 101 Query: 106 FSVLLGVCTLRF 71 L+G+C F Sbjct: 102 LLCLIGMCNTAF 113
>CLD12_HUMAN (P56749) Claudin-12| Length = 244 Score = 28.5 bits (62), Expect = 8.4 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 8/72 (11%) Frame = -3 Query: 262 VVRGVWCSC*RYSGRLRCKCVCCLH*VMYEISW--------LGLIQFGLLDWILHTYTHS 107 V G+W C RY G C +MY+ +W L ++QF L +L Sbjct: 50 VYTGLWVKCARYDGSSDC--------LMYDTTWYSSVDQLDLRVLQFALPLSMLIAMGAL 101 Query: 106 FSVLLGVCTLRF 71 L+G+C F Sbjct: 102 LLCLIGMCNTAF 113
>TESK1_RAT (Q63572) Dual specificity testis-specific protein kinase 1 (EC| 2.7.12.1) (Testicular protein kinase 1) Length = 628 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = +1 Query: 241 NTTLHELHA*SALERTEPSRKPPAP 315 N H L +ALERTEPS P AP Sbjct: 537 NRAQHSLPRAAALERTEPSPPPSAP 561
>TESK1_HUMAN (Q15569) Dual specificity testis-specific protein kinase 1 (EC| 2.7.12.1) (Testicular protein kinase 1) Length = 626 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = +1 Query: 241 NTTLHELHA*SALERTEPSRKPPAP 315 N H L +ALERTEPS P AP Sbjct: 535 NRAQHSLPRAAALERTEPSPPPSAP 559 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,117,414 Number of Sequences: 219361 Number of extensions: 1434848 Number of successful extensions: 3981 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3861 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3977 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
