ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart57d08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477988.1| Oryza sativa (japonica cultivar-group), mRNA 82 2e-12
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
3dbj|AP005256.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
4dbj|AK059964.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
5gb|AY104561.1| Zea mays PCO100178 mRNA sequence 72 2e-09
6gb|AY107632.1| Zea mays PCO111272 mRNA sequence 58 3e-05
7emb|X85747.1|OS1A1COX O.sativa mRNA for 1-aminocyclopropane-1-ca... 56 1e-04
8gb|AC125078.2| Mus musculus BAC clone RP23-478C7 from chromosome... 44 0.39
9gb|AC166572.1| Mus musculus BAC clone RP23-346L20 from chromosom... 44 0.39
10gb|CP000284.1| Methylobacillus flagellatus KT, complete genome 44 0.39
11gb|AC127430.4| Homo sapiens chromosome 3 clone CTD-2563A18, comp... 44 0.39
12emb|CT027602.9| Mouse DNA sequence from clone RP24-359G24 on chr... 44 0.39
13gb|AC126937.3| Mus musculus BAC clone RP24-250G8 from chromosome... 42 1.6
14emb|CT025652.7| Mouse DNA sequence from clone RP24-68J3 on chrom... 42 1.6
15gb|CP000316.1| Polaromonas sp. JS666, complete genome 42 1.6
16dbj|AP001000.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 1.6
17dbj|AP003098.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 1.6
18emb|CT009658.7| Mouse DNA sequence from clone CH29-505N5 on chro... 42 1.6
19emb|CR352327.13| Zebrafish DNA sequence from clone CH211-194C22 ... 40 6.1
20gb|AY363103.1|AY363102S2 Mus musculus diadenosine triphosphate h... 40 6.1
21gb|AC117447.6| Homo sapiens 3 BAC RP11-256E13 (Roswell Park Canc... 40 6.1
22gb|AC123834.4| Mus musculus BAC clone RP24-132N9 from chromosome... 40 6.1
23gb|AC110814.5| Homo sapiens BAC clone RP11-1338A7 from 4, comple... 40 6.1
24emb|AL365205.35| Human DNA sequence from clone RP11-298J23 on ch... 40 6.1
25ref|XM_777717.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.1
26gb|AC158529.2| Mus musculus BAC clone RP23-263H3 from chromosome... 40 6.1
27gb|AC159283.2| Mus musculus BAC clone RP23-317B21 from chromosom... 40 6.1
28gb|AF332862.1|AF332859S2 Mus musculus diadenosine triphosphate h... 40 6.1
29dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
30dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
31gb|AC013265.7| Homo sapiens BAC clone RP11-197H3 from 2, complet... 40 6.1
32dbj|AP003948.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
33gb|AC149875.2| Xenopus tropicalis clone CH216-151P11, complete s... 40 6.1
34gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
35emb|AL954355.10| Mouse DNA sequence from clone RP23-94F6 on chro... 40 6.1
36emb|BX667525.2|CNS09SC3 Oryza sativa chromosome 12, . Partial se... 40 6.1
37emb|AL928747.3|CNS08CBK Oryza sativa chromosome 12, . BAC OSJNBa... 40 6.1
38gb|AY653733.1| Acanthamoeba polyphaga mimivirus, complete genome 40 6.1
39emb|AL589696.10| Mouse DNA sequence from clone RP23-454M13 on ch... 40 6.1
40emb|AL135758.32| Mouse DNA sequence from clone RP21-117J5 on chr... 40 6.1 
>ref|XM_477988.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 908

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                       
Query: 360 ctgtaagtgcccatgccgatggtggagccgccgtatggagcgccaccggcggcatcccgg 419
           ||||||||||||||||| ||| ||||||| ||||| || || || || || ||||| |||
Sbjct: 670 ctgtaagtgcccatgccaatgttggagccaccgtacggggcacccccagcagcatcgcgg 611

                                                
Query: 420 gatttggagtagctgatgtagtagaactcgctgagga 456
           || ||||||||||| | ||||||||| ||||||||||
Sbjct: 610 gacttggagtagctaacgtagtagaattcgctgagga 574



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 125 cagaatccaatccaataatccgaattgtataaggcccaaccaggaaatctcataca 180
           ||||||||||||||||||||||||| || ||   |||||||| | |||||||||||
Sbjct: 871 cagaatccaatccaataatccgaatagtgtacaacccaaccaagtaatctcataca 816
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                            
Query: 360      ctgtaagtgcccatgccgatggtggagccgccgtatggagcgccaccggcggcatcccgg 419
                ||||||||||||||||| ||| ||||||| ||||| || || || || || ||||| |||
Sbjct: 16173356 ctgtaagtgcccatgccaatgttggagccaccgtacggggcacccccagcagcatcgcgg 16173415

                                                     
Query: 420      gatttggagtagctgatgtagtagaactcgctgagga 456
                || ||||||||||| | ||||||||| ||||||||||
Sbjct: 16173416 gacttggagtagctaacgtagtagaattcgctgagga 16173452



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                        
Query: 125      cagaatccaatccaataatccgaattgtataaggcccaaccaggaaatctcataca 180
                ||||||||||||||||||||||||| || ||   |||||||| | |||||||||||
Sbjct: 16173155 cagaatccaatccaataatccgaatagtgtacaacccaaccaagtaatctcataca 16173210
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>dbj|AP005256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0038F09
          Length = 166568

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                          
Query: 360    ctgtaagtgcccatgccgatggtggagccgccgtatggagcgccaccggcggcatcccgg 419
              ||||||||||||||||| ||| ||||||| ||||| || || || || || ||||| |||
Sbjct: 143689 ctgtaagtgcccatgccaatgttggagccaccgtacggggcacccccagcagcatcgcgg 143748

                                                   
Query: 420    gatttggagtagctgatgtagtagaactcgctgagga 456
              || ||||||||||| | ||||||||| ||||||||||
Sbjct: 143749 gacttggagtagctaacgtagtagaattcgctgagga 143785



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                      
Query: 125    cagaatccaatccaataatccgaattgtataaggcccaaccaggaaatctcataca 180
              ||||||||||||||||||||||||| || ||   |||||||| | |||||||||||
Sbjct: 143488 cagaatccaatccaataatccgaatagtgtacaacccaaccaagtaatctcataca 143543
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>dbj|AK059964.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-F08, full
           insert sequence
          Length = 908

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                       
Query: 360 ctgtaagtgcccatgccgatggtggagccgccgtatggagcgccaccggcggcatcccgg 419
           ||||||||||||||||| ||| ||||||| ||||| || || || || || ||||| |||
Sbjct: 670 ctgtaagtgcccatgccaatgttggagccaccgtacggggcacccccagcagcatcgcgg 611

                                                
Query: 420 gatttggagtagctgatgtagtagaactcgctgagga 456
           || ||||||||||| | ||||||||| ||||||||||
Sbjct: 610 gacttggagtagctaacgtagtagaattcgctgagga 574



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 125 cagaatccaatccaataatccgaattgtataaggcccaaccaggaaatctcataca 180
           ||||||||||||||||||||||||| || ||   |||||||| | |||||||||||
Sbjct: 871 cagaatccaatccaataatccgaatagtgtacaacccaaccaagtaatctcataca 816
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>gb|AY104561.1| Zea mays PCO100178 mRNA sequence
          Length = 1105

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 67/76 (88%), Gaps = 1/76 (1%)
 Strand = Plus / Minus

                                                                       
Query: 361 tgtaagtgcccatgccgatggtggagccgccgtatggagcgccaccggcggcatccc-gg 419
           |||||| ||||||||| ||| ||||||||||||| || || ||||||||||| |||| ||
Sbjct: 712 tgtaagggcccatgccaatgctggagccgccgtagggggcaccaccggcggcgtcccggg 653

                           
Query: 420 gatttggagtagctga 435
           || |||||||||||||
Sbjct: 652 gacttggagtagctga 637
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>gb|AY107632.1| Zea mays PCO111272 mRNA sequence
          Length = 538

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 402 ccaccggcggcatcccgggatttggagtagctgatgtagta 442
           ||||| |||||||| ||||||||||||||||||| ||||||
Sbjct: 340 ccaccagcggcatctcgggatttggagtagctgaggtagta 380
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>emb|X85747.1|OS1A1COX O.sativa mRNA for 1-aminocyclopropane-1-carboxylate oxidase
          Length = 1595

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 125 cagaatccaatccaataatccgaattgtataaggcccaaccaggaaatctcataca 180
           ||||||||||||||||||||||||| || ||   |||||||| | |||||||||||
Sbjct: 197 cagaatccaatccaataatccgaatagtgtacaacccaaccaagtaatctcataca 252
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>gb|AC125078.2| Mus musculus BAC clone RP23-478C7 from chromosome 6, complete sequence
          Length = 204570

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 98    tacagaaaatgagtgtgtatat 119
             ||||||||||||||||||||||
Sbjct: 45578 tacagaaaatgagtgtgtatat 45557
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>gb|AC166572.1| Mus musculus BAC clone RP23-346L20 from chromosome 16, complete
             sequence
          Length = 183111

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 105   aatgagtgtgtatatgtatgcagaat 130
             ||||||||||||||||||| ||||||
Sbjct: 19324 aatgagtgtgtatatgtattcagaat 19349
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>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 120     gtatgcagaatccaatccaata 141
               ||||||||||||||||||||||
Sbjct: 1033102 gtatgcagaatccaatccaata 1033123



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 120    gtatgcagaatccaatccaata 141
              ||||||||||||||||||||||
Sbjct: 890070 gtatgcagaatccaatccaata 890091
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>gb|AC127430.4| Homo sapiens chromosome 3 clone CTD-2563A18, complete sequence
          Length = 181750

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 27     ataaagtggtataatacatttg 48
              ||||||||||||||||||||||
Sbjct: 103586 ataaagtggtataatacatttg 103607
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>emb|CT027602.9| Mouse DNA sequence from clone RP24-359G24 on chromosome 16, complete
            sequence
          Length = 194283

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 105  aatgagtgtgtatatgtatgcagaat 130
            ||||||||||||||||||| ||||||
Sbjct: 3130 aatgagtgtgtatatgtattcagaat 3105
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>gb|AC126937.3| Mus musculus BAC clone RP24-250G8 from chromosome 17, complete sequence
          Length = 150579

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 106    atgagtgtgtatatgtatgca 126
              |||||||||||||||||||||
Sbjct: 123137 atgagtgtgtatatgtatgca 123117
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>emb|CT025652.7| Mouse DNA sequence from clone RP24-68J3 on chromosome 17, complete
              sequence
          Length = 226856

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 106    atgagtgtgtatatgtatgca 126
              |||||||||||||||||||||
Sbjct: 147380 atgagtgtgtatatgtatgca 147400
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 367     tgcccatgccgatggtggagccgcc 391
               |||||| ||||||||||||||||||
Sbjct: 2144434 tgcccaggccgatggtggagccgcc 2144410
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>dbj|AP001000.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-676M6, complete
             sequence
          Length = 204955

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 122   atgcagaatccaatccaataa 142
             |||||||||||||||||||||
Sbjct: 21446 atgcagaatccaatccaataa 21426
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>dbj|AP003098.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-141D23, complete
              sequence
          Length = 183853

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 122    atgcagaatccaatccaataa 142
              |||||||||||||||||||||
Sbjct: 155403 atgcagaatccaatccaataa 155383
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>emb|CT009658.7| Mouse DNA sequence from clone CH29-505N5 on chromosome 17, complete
             sequence
          Length = 190153

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 106   atgagtgtgtatatgtatgca 126
             |||||||||||||||||||||
Sbjct: 17548 atgagtgtgtatatgtatgca 17568
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>emb|CR352327.13| Zebrafish DNA sequence from clone CH211-194C22 in linkage group 8,
              complete sequence
          Length = 203325

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    gagtgtgtatatgtatgcag 127
              ||||||||||||||||||||
Sbjct: 158472 gagtgtgtatatgtatgcag 158453
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>gb|AY363103.1|AY363102S2 Mus musculus diadenosine triphosphate hydrolase (Fhit) gene, exons 6
             through 10 and partial cds
          Length = 688489

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 345   cgctgagctccttaactgtaagtg 368
             ||||||||||||||| ||||||||
Sbjct: 35364 cgctgagctccttaaatgtaagtg 35387
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>gb|AC117447.6| Homo sapiens 3 BAC RP11-256E13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 78229

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   aaatgagtgtgtatatgtat 123
             ||||||||||||||||||||
Sbjct: 27176 aaatgagtgtgtatatgtat 27157
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>gb|AC123834.4| Mus musculus BAC clone RP24-132N9 from chromosome 13, complete sequence
          Length = 153028

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    tgaagacagcaaacacattt 208
              ||||||||||||||||||||
Sbjct: 150366 tgaagacagcaaacacattt 150385
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>gb|AC110814.5| Homo sapiens BAC clone RP11-1338A7 from 4, complete sequence
          Length = 137723

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   catacataacctagtgaaga 194
             ||||||||||||||||||||
Sbjct: 17164 catacataacctagtgaaga 17145
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>emb|AL365205.35| Human DNA sequence from clone RP11-298J23 on chromosome 6 Contains the
             5' end of the TFEB gene for transcription factor EB, the
             PGC gene for progastricsin, the FRS3 gene for fibroblast
             growth factor receptor substrate 3, the C6orf49 gene for
             chromosome 6 open reading frame 49, the 3' end of the
             USP49 gene for ubiquitin specific protease 49, the 3' end
             of a novel gene and 5 CpG islands, complete sequence
          Length = 106711

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   atgagtgtgtatatgtatgc 125
             ||||||||||||||||||||
Sbjct: 93449 atgagtgtgtatatgtatgc 93430
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>ref|XM_777717.1| PREDICTED: Strongylocentrotus purpuratus similar to WD repeat
           domain 41 (LOC577493), mRNA
          Length = 1368

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 295 tcccgtaaacctccagcgccgagc 318
           ||||||| ||||||||||||||||
Sbjct: 586 tcccgtacacctccagcgccgagc 563
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>gb|AC158529.2| Mus musculus BAC clone RP23-263H3 from chromosome 13, complete sequence
          Length = 172769

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   tgaagacagcaaacacattt 208
             ||||||||||||||||||||
Sbjct: 34629 tgaagacagcaaacacattt 34648
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>gb|AC159283.2| Mus musculus BAC clone RP23-317B21 from chromosome 12, complete sequence
          Length = 245361

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    tgagtgtgtatatgtatgca 126
              ||||||||||||||||||||
Sbjct: 161269 tgagtgtgtatatgtatgca 161250
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>gb|AF332862.1|AF332859S2 Mus musculus diadenosine triphosphate hydrolase (Fhit) gene, intron 5,
              partial sequence
          Length = 166617

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 345    cgctgagctccttaactgtaagtg 368
              ||||||||||||||| ||||||||
Sbjct: 155825 cgctgagctccttaaatgtaagtg 155848
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 388      cgccgtatggagcgccaccggcggcatc 415
                |||||||||||| |||||||||| ||||
Sbjct: 13873364 cgccgtatggagggccaccggcgccatc 13873337
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 125      cagaatccaatccaataatc 144
                ||||||||||||||||||||
Sbjct: 27061124 cagaatccaatccaataatc 27061143
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>gb|AC013265.7| Homo sapiens BAC clone RP11-197H3 from 2, complete sequence
          Length = 151721

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    aggtatattgagaatgataa 30
             ||||||||||||||||||||
Sbjct: 38836 aggtatattgagaatgataa 38855
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>dbj|AP003948.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1211_G06
          Length = 96421

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   cagaatccaatccaataatc 144
             ||||||||||||||||||||
Sbjct: 32211 cagaatccaatccaataatc 32230
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>gb|AC149875.2| Xenopus tropicalis clone CH216-151P11, complete sequence
          Length = 155394

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    tgtgtatatgtatgcagaat 130
              ||||||||||||||||||||
Sbjct: 138283 tgtgtatatgtatgcagaat 138264
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 388      cgccgtatggagcgccaccggcggcatc 415
                |||||||||||| |||||||||| ||||
Sbjct: 13827644 cgccgtatggagggccaccggcgccatc 13827617
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>emb|AL954355.10| Mouse DNA sequence from clone RP23-94F6 on chromosome X, complete
             sequence
          Length = 133265

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   aaccaggaaatctcatacat 181
             ||||||||||||||||||||
Sbjct: 17145 aaccaggaaatctcatacat 17164
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>emb|BX667525.2|CNS09SC3 Oryza sativa chromosome 12, . Partial sequence from PAC P0185F07 of
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 50021

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 388   cgccgtatggagcgccaccggcggcatc 415
             |||||||||||| |||||||||| ||||
Sbjct: 42167 cgccgtatggagggccaccggcgccatc 42140
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>emb|AL928747.3|CNS08CBK Oryza sativa chromosome 12, . BAC OSJNBa0017A21 of library OSJNBa
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 144552

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 388  cgccgtatggagcgccaccggcggcatc 415
            |||||||||||| |||||||||| ||||
Sbjct: 9992 cgccgtatggagggccaccggcgccatc 9965
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>gb|AY653733.1| Acanthamoeba polyphaga mimivirus, complete genome
          Length = 1181404

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 131     ccaatccaataatccgaatt 150
               ||||||||||||||||||||
Sbjct: 1155067 ccaatccaataatccgaatt 1155048
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>emb|AL589696.10| Mouse DNA sequence from clone RP23-454M13 on chromosome 15, complete
              sequence
          Length = 207431

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 345    cgctgagctccttaactgtaagtg 368
              ||||||||||||||| ||||||||
Sbjct: 125286 cgctgagctccttaaatgtaagtg 125263
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>emb|AL135758.32| Mouse DNA sequence from clone RP21-117J5 on chromosome 5, complete
             sequence
          Length = 142667

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   aaccaggaaatctcatacat 181
             ||||||||||||||||||||
Sbjct: 60098 aaccaggaaatctcatacat 60117


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,809,921
Number of Sequences: 3902068
Number of extensions: 3809921
Number of successful extensions: 96426
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96143
Number of HSP's gapped (non-prelim): 282
length of query: 456
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 434
effective length of database: 17,147,199,772
effective search space: 7441884701048
effective search space used: 7441884701048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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