Clone Name | rbart57d05 |
---|---|
Clone Library Name | barley_pub |
>EDG6_MOUSE (Q9Z0L1) Sphingosine 1-phosphate receptor Edg-6 (S1P receptor| Edg-6) (Endothelial differentiation G-protein coupled receptor 6) (Lysophospholipid receptor C1) (Sphingosine 1-phosphate receptor 4) (S1P4) Length = 386 Score = 30.8 bits (68), Expect = 0.84 Identities = 16/51 (31%), Positives = 26/51 (50%) Frame = -2 Query: 168 LFSFCPPIVWTIVSAAALCISILPMFNMGLNLGVC*LFIVTLLIRLSLFAA 16 + P + W V A C S+LP+++ G L +F + L+ LSL+ A Sbjct: 177 ILGLLPLLGWNCVCAFPRCSSLLPLYSKGYVLFCVVVFALILVAILSLYGA 227
>ALA12_ARATH (P57792) Putative phospholipid-transporting ATPase 12 (EC 3.6.3.1)| (Aminophospholipid flippase 12) Length = 1184 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Frame = +2 Query: 17 AANKLKRINKVTINN*QTPRFKPILNIGKMEIHKAAAETIVHTI-GGQKENKKSGGVQRS 193 A + L+R K I N +TP + + G+ + A E ++H I G+ + K SGG ++ Sbjct: 745 ACSLLRRDMKQIIINLETPEIQQLEKSGEKDAIAALKENVLHQITSGKAQLKASGGNAKA 804 Query: 194 ILLPIN 211 L I+ Sbjct: 805 FALIID 810
>GLGB_BACCR (Q816G6) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 645 Score = 30.0 bits (66), Expect = 1.4 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Frame = -1 Query: 331 NTNHGNRRHKRR--HAEK*TTVECHLGLQKSEHVLP**GCAPVYW*KDGTLYTTRFFVFL 158 N + NR+ K++ + E T E H G K + +DGTLY+ R V Sbjct: 130 NDKNWNRKKKKKSIYKEAMTVYELHFGSWKKK--------------EDGTLYSYREMVEE 175 Query: 157 LPPYCMDYSFS 125 L PY +++ F+ Sbjct: 176 LIPYVVEHQFT 186
>HEMA_IAPUE (P03452) Hemagglutinin precursor [Contains: Hemagglutinin HA1| chain; Hemagglutinin HA2 chain] Length = 566 Score = 29.6 bits (65), Expect = 1.9 Identities = 13/45 (28%), Positives = 23/45 (51%) Frame = +1 Query: 157 KGKQKIWWCTAFHPSTNKQEHSLIREEHALISATLDGTQRLFTSQ 291 KGK+ + HPS +K + ++ + E+A +S R FT + Sbjct: 186 KGKEVLVLWGIHHPSNSKDQQNIYQNENAYVSVVTSNYNRRFTPE 230
>HEMA_CVPIA (Q8JSP9) Hemagglutinin-esterase precursor (EC 3.1.1.53) (HE) (E3| glycoprotein) Length = 424 Score = 29.6 bits (65), Expect = 1.9 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = -2 Query: 177 PDFLFSFCPPIVWTIVSAAALCI-SILPMFNMGLNLGVC*LFIVTLLI 37 P F F CP I S +C+ LP+ +G+ LGV + IV LL+ Sbjct: 364 PLFPFGNCPTAASIISSDLPICVYDPLPIILLGILLGVAVIVIVVLLL 411
>HEMA_CVP67 (Q8BB26) Hemagglutinin-esterase precursor (EC 3.1.1.53) (HE) (E3| glycoprotein) Length = 424 Score = 29.6 bits (65), Expect = 1.9 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = -2 Query: 177 PDFLFSFCPPIVWTIVSAAALCI-SILPMFNMGLNLGVC*LFIVTLLI 37 P F F CP I S +C+ LP+ +G+ LGV + IV LL+ Sbjct: 364 PLFPFGNCPTAASIISSDLPICVYDPLPIILLGILLGVAVIVIVVLLL 411
>EXEC1_ARATH (Q93YW0) EXECUTER1 protein, chloroplast precursor| Length = 684 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = +3 Query: 255 NPRWHSTV--VYFSACRRLCLLLPWFVLLSRDD 347 NPRW S + V SA +R +L W+ L DD Sbjct: 64 NPRWDSAIQDVLKSAIKRFDSVLSWYATLDNDD 96
>NU5M_STRCA (Q35813) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 605 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/34 (35%), Positives = 23/34 (67%) Frame = +2 Query: 131 TIVHTIGGQKENKKSGGVQRSILLPINRSTASSG 232 +I+H++ G+++ +K GG+Q+ LLP S + G Sbjct: 346 SIIHSLAGEQDIRKMGGLQK--LLPTTTSCLTIG 377
>HEMA_IAWIL (P03454) Hemagglutinin precursor [Contains: Hemagglutinin HA1| chain; Hemagglutinin HA2 chain] Length = 565 Score = 27.3 bits (59), Expect = 9.3 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Frame = +1 Query: 157 KGKQKIWWCTAFHPSTNKQEHSLIREEHALISATLDGTQRLFTSQHVG-ACVSYCHGLCY 333 KGK+ + HPS++ ++ SL +A +S R FT + V HG Sbjct: 185 KGKEVLVLWGVHHPSSSDEQQSLYSNGNAYVSVASSNYNRRFTPEIAARPKVKDQHGRMN 244 Query: 334 YHETI 348 Y+ T+ Sbjct: 245 YYWTL 249
>DLLC_BRARE (Q9IAT6) Delta-like protein C precursor (DeltaC protein) (delC)| Length = 664 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%) Frame = +3 Query: 225 HQGRTCSDFCNPRWHSTVVYF---SACRRLCL 311 + G CSDFC PR + T +F +A R+CL Sbjct: 160 YHGEECSDFCRPR-NDTFGHFNCDAAGNRICL 190
>ERG12_BRANA (O65726) Squalene monooxygenase 1,2 (EC 1.14.99.7) (Squalene| epoxidase 1,2) (SE 1,2) Length = 518 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = -1 Query: 145 CMDYSFSSGLMYLHLADV*YGLKPRRLLIVYCNFVDTLEFVCSVLATF 2 C DY S G L + G+ PR L + Y FV +L + +L+ F Sbjct: 420 CFDYLSSGGFRTSGLMALIGGMNPRPLSLFYHLFVISLSSIGQLLSPF 467 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,222,088 Number of Sequences: 219361 Number of extensions: 1082138 Number of successful extensions: 2730 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 2666 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2729 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)