ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart57d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EDG6_MOUSE (Q9Z0L1) Sphingosine 1-phosphate receptor Edg-6 (S1P ... 31 0.84
2ALA12_ARATH (P57792) Putative phospholipid-transporting ATPase 1... 30 1.1
3GLGB_BACCR (Q816G6) 1,4-alpha-glucan branching enzyme (EC 2.4.1.... 30 1.4
4HEMA_IAPUE (P03452) Hemagglutinin precursor [Contains: Hemagglut... 30 1.9
5HEMA_CVPIA (Q8JSP9) Hemagglutinin-esterase precursor (EC 3.1.1.5... 30 1.9
6HEMA_CVP67 (Q8BB26) Hemagglutinin-esterase precursor (EC 3.1.1.5... 30 1.9
7EXEC1_ARATH (Q93YW0) EXECUTER1 protein, chloroplast precursor 29 2.4
8NU5M_STRCA (Q35813) NADH-ubiquinone oxidoreductase chain 5 (EC 1... 28 7.1
9HEMA_IAWIL (P03454) Hemagglutinin precursor [Contains: Hemagglut... 27 9.3
10DLLC_BRARE (Q9IAT6) Delta-like protein C precursor (DeltaC prote... 27 9.3
11ERG12_BRANA (O65726) Squalene monooxygenase 1,2 (EC 1.14.99.7) (... 27 9.3

>EDG6_MOUSE (Q9Z0L1) Sphingosine 1-phosphate receptor Edg-6 (S1P receptor|
           Edg-6) (Endothelial differentiation G-protein coupled
           receptor 6) (Lysophospholipid receptor C1) (Sphingosine
           1-phosphate receptor 4) (S1P4)
          Length = 386

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 168 LFSFCPPIVWTIVSAAALCISILPMFNMGLNLGVC*LFIVTLLIRLSLFAA 16
           +    P + W  V A   C S+LP+++ G  L    +F + L+  LSL+ A
Sbjct: 177 ILGLLPLLGWNCVCAFPRCSSLLPLYSKGYVLFCVVVFALILVAILSLYGA 227



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>ALA12_ARATH (P57792) Putative phospholipid-transporting ATPase 12 (EC 3.6.3.1)|
           (Aminophospholipid flippase 12)
          Length = 1184

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +2

Query: 17  AANKLKRINKVTINN*QTPRFKPILNIGKMEIHKAAAETIVHTI-GGQKENKKSGGVQRS 193
           A + L+R  K  I N +TP  + +   G+ +   A  E ++H I  G+ + K SGG  ++
Sbjct: 745 ACSLLRRDMKQIIINLETPEIQQLEKSGEKDAIAALKENVLHQITSGKAQLKASGGNAKA 804

Query: 194 ILLPIN 211
             L I+
Sbjct: 805 FALIID 810



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>GLGB_BACCR (Q816G6) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 645

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = -1

Query: 331 NTNHGNRRHKRR--HAEK*TTVECHLGLQKSEHVLP**GCAPVYW*KDGTLYTTRFFVFL 158
           N  + NR+ K++  + E  T  E H G  K +              +DGTLY+ R  V  
Sbjct: 130 NDKNWNRKKKKKSIYKEAMTVYELHFGSWKKK--------------EDGTLYSYREMVEE 175

Query: 157 LPPYCMDYSFS 125
           L PY +++ F+
Sbjct: 176 LIPYVVEHQFT 186



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>HEMA_IAPUE (P03452) Hemagglutinin precursor [Contains: Hemagglutinin HA1|
           chain; Hemagglutinin HA2 chain]
          Length = 566

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 157 KGKQKIWWCTAFHPSTNKQEHSLIREEHALISATLDGTQRLFTSQ 291
           KGK+ +      HPS +K + ++ + E+A +S       R FT +
Sbjct: 186 KGKEVLVLWGIHHPSNSKDQQNIYQNENAYVSVVTSNYNRRFTPE 230



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>HEMA_CVPIA (Q8JSP9) Hemagglutinin-esterase precursor (EC 3.1.1.53) (HE) (E3|
           glycoprotein)
          Length = 424

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 177 PDFLFSFCPPIVWTIVSAAALCI-SILPMFNMGLNLGVC*LFIVTLLI 37
           P F F  CP     I S   +C+   LP+  +G+ LGV  + IV LL+
Sbjct: 364 PLFPFGNCPTAASIISSDLPICVYDPLPIILLGILLGVAVIVIVVLLL 411



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>HEMA_CVP67 (Q8BB26) Hemagglutinin-esterase precursor (EC 3.1.1.53) (HE) (E3|
           glycoprotein)
          Length = 424

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 177 PDFLFSFCPPIVWTIVSAAALCI-SILPMFNMGLNLGVC*LFIVTLLI 37
           P F F  CP     I S   +C+   LP+  +G+ LGV  + IV LL+
Sbjct: 364 PLFPFGNCPTAASIISSDLPICVYDPLPIILLGILLGVAVIVIVVLLL 411



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>EXEC1_ARATH (Q93YW0) EXECUTER1 protein, chloroplast precursor|
          Length = 684

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +3

Query: 255 NPRWHSTV--VYFSACRRLCLLLPWFVLLSRDD 347
           NPRW S +  V  SA +R   +L W+  L  DD
Sbjct: 64  NPRWDSAIQDVLKSAIKRFDSVLSWYATLDNDD 96



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>NU5M_STRCA (Q35813) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 605

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +2

Query: 131 TIVHTIGGQKENKKSGGVQRSILLPINRSTASSG 232
           +I+H++ G+++ +K GG+Q+  LLP   S  + G
Sbjct: 346 SIIHSLAGEQDIRKMGGLQK--LLPTTTSCLTIG 377



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>HEMA_IAWIL (P03454) Hemagglutinin precursor [Contains: Hemagglutinin HA1|
           chain; Hemagglutinin HA2 chain]
          Length = 565

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +1

Query: 157 KGKQKIWWCTAFHPSTNKQEHSLIREEHALISATLDGTQRLFTSQHVG-ACVSYCHGLCY 333
           KGK+ +      HPS++ ++ SL    +A +S       R FT +      V   HG   
Sbjct: 185 KGKEVLVLWGVHHPSSSDEQQSLYSNGNAYVSVASSNYNRRFTPEIAARPKVKDQHGRMN 244

Query: 334 YHETI 348
           Y+ T+
Sbjct: 245 YYWTL 249



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>DLLC_BRARE (Q9IAT6) Delta-like protein C precursor (DeltaC protein) (delC)|
          Length = 664

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +3

Query: 225 HQGRTCSDFCNPRWHSTVVYF---SACRRLCL 311
           + G  CSDFC PR + T  +F   +A  R+CL
Sbjct: 160 YHGEECSDFCRPR-NDTFGHFNCDAAGNRICL 190



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>ERG12_BRANA (O65726) Squalene monooxygenase 1,2 (EC 1.14.99.7) (Squalene|
           epoxidase 1,2) (SE 1,2)
          Length = 518

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -1

Query: 145 CMDYSFSSGLMYLHLADV*YGLKPRRLLIVYCNFVDTLEFVCSVLATF 2
           C DY  S G     L  +  G+ PR L + Y  FV +L  +  +L+ F
Sbjct: 420 CFDYLSSGGFRTSGLMALIGGMNPRPLSLFYHLFVISLSSIGQLLSPF 467


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,222,088
Number of Sequences: 219361
Number of extensions: 1082138
Number of successful extensions: 2730
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2729
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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