ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart57d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AB011443.1| Triticum aestivum WESR2 mRNA, partial sequence 216 4e-53
2ref|XM_483357.1| Oryza sativa (japonica cultivar-group), mRNA 56 8e-05
3gb|AY224462.1| Oryza sativa (japonica cultivar-group) isolate 23... 56 8e-05
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 56 8e-05
5dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic D... 56 8e-05
6dbj|AB118016.1| Oryza sativa (japonica cultivar-group) bip129 mR... 56 8e-05
7dbj|AK070323.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 8e-05
8emb|AL023806.1|HS466P17 Human DNA sequence from clone RP3-466P17... 42 1.2
9gb|BT017482.1| Zea mays clone EL01N0412B11.c mRNA sequence 40 4.9
10gb|AY596608.1| Saccharum officinarum clone SCCCRZ1001G11, comple... 40 4.9
11gb|AC174830.3| Myotis lucifugus clone CH235-234J19, complete seq... 40 4.9
12emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4,... 40 4.9
13gb|AC016868.8| Homo sapiens chromosome 8, clone RP11-15G16, comp... 40 4.9
14gb|AC016602.7| Homo sapiens chromosome 5 clone CTD-2061O12, comp... 40 4.9
15dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
16gb|AC025754.4|AC025754 Homo sapiens chromosome 5 clone CTD-2024P... 40 4.9
17gb|AY107973.1| Zea mays PCO099381 mRNA sequence 40 4.9
18dbj|AP001525.6| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 4.9

>dbj|AB011443.1| Triticum aestivum WESR2 mRNA, partial sequence
          Length = 760

 Score =  216 bits (109), Expect = 4e-53
 Identities = 171/189 (90%), Gaps = 2/189 (1%)
 Strand = Plus / Minus

                                                                       
Query: 182 gtacagcgttccatccttctaccaataaacaggagcacagcctcatcagggaagaacatg 241
           |||||||||||||||||||||||| | ||||||||| |||| |||||||||||| |||||
Sbjct: 760 gtacagcgttccatccttctacca-tgaacaggagcgcagc-tcatcagggaaggacatg 703

                                                                       
Query: 242 ctctgatttctgcaaccctagatggcactcaacggttgtttacttctcagcatgtcggcg 301
           |||||||||||||||||||| ||||||  | ||| | |||||||||||||||||||||||
Sbjct: 702 ctctgatttctgcaaccctacatggcagccgacgatagtttacttctcagcatgtcggcg 643

                                                                       
Query: 302 cttgtgtctcctattgccatggtttgtgttactatcacgagacgatctcttctgcttctt 361
           |||||||||||||||||||||||||  ||||| || | ||| ||||||||||||||||||
Sbjct: 642 cttgtgtctcctattgccatggtttccgttaccattaagaggcgatctcttctgcttctt 583

                    
Query: 362 tgtgcagaa 370
            ||||||||
Sbjct: 582 cgtgcagaa 574



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>ref|XM_483357.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1922

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 282  tacttctcagcatgtcggcgcttgtgtctcctattgccatggtt 325
            ||||| |||||||| ||||||||||||||||||| ||| |||||
Sbjct: 1544 tacttatcagcatgccggcgcttgtgtctcctatggccgtggtt 1501



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>gb|AY224462.1| Oryza sativa (japonica cultivar-group) isolate 23522 unknown mRNA
          Length = 960

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                       
Query: 282 tacttctcagcatgtcggcgcttgtgtctcctattgccatggtt 325
           ||||| |||||||| ||||||||||||||||||| ||| |||||
Sbjct: 959 tacttatcagcatgccggcgcttgtgtctcctatggccgtggtt 916



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                            
Query: 282      tacttctcagcatgtcggcgcttgtgtctcctattgccatggtt 325
                ||||| |||||||| ||||||||||||||||||| ||| |||||
Sbjct: 25792411 tacttatcagcatgccggcgcttgtgtctcctatggccgtggtt 25792454



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>dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0689E12
          Length = 147516

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                         
Query: 282   tacttctcagcatgtcggcgcttgtgtctcctattgccatggtt 325
             ||||| |||||||| ||||||||||||||||||| ||| |||||
Sbjct: 64622 tacttatcagcatgccggcgcttgtgtctcctatggccgtggtt 64665



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>dbj|AB118016.1| Oryza sativa (japonica cultivar-group) bip129 mRNA for BRI1-KD
           interacting protein 129, partial cds
          Length = 522

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                       
Query: 282 tacttctcagcatgtcggcgcttgtgtctcctattgccatggtt 325
           ||||| |||||||| ||||||||||||||||||| ||| |||||
Sbjct: 246 tacttatcagcatgccggcgcttgtgtctcctatggccgtggtt 203



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>dbj|AK070323.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052N10, full
            insert sequence
          Length = 1922

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 282  tacttctcagcatgtcggcgcttgtgtctcctattgccatggtt 325
            ||||| |||||||| ||||||||||||||||||| ||| |||||
Sbjct: 1543 tacttatcagcatgccggcgcttgtgtctcctatggccgtggtt 1500



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>emb|AL023806.1|HS466P17 Human DNA sequence from clone RP3-466P17 on chromosome 6q24 Contains
             the 5' end of the EPM2A gene for progressive myoclonus
             type 2 epilepsy (Lafora disease) protein (laforin) and a
             CpG island, complete sequence
          Length = 149963

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 154   gcaaaaggaaaacaaaaaatc 174
             |||||||||||||||||||||
Sbjct: 12459 gcaaaaggaaaacaaaaaatc 12439



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>gb|BT017482.1| Zea mays clone EL01N0412B11.c mRNA sequence
          Length = 1016

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 282 tacttctcagcatgtcggcgcttgtgtctcctattgccatggtt 325
           ||||| ||||||||||| ||||||| |||| | | |||||||||
Sbjct: 685 tacttgtcagcatgtcgccgcttgtatctcttgtggccatggtt 642



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>gb|AY596608.1| Saccharum officinarum clone SCCCRZ1001G11, complete sequence
          Length = 1735

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 282 tacttctcagcatgtcggcgcttgtgtctcctattgccatggtt 325
           ||||| ||||| ||||| |||||||||||| | | |||||||||
Sbjct: 416 tacttgtcagcgtgtcgccgcttgtgtctcttgtggccatggtt 459



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>gb|AC174830.3| Myotis lucifugus clone CH235-234J19, complete sequence
          Length = 196835

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   caaaaggaaaacaaaaaatc 174
             ||||||||||||||||||||
Sbjct: 35354 caaaaggaaaacaaaaaatc 35373



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>emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081L15,
             complete sequence
          Length = 150864

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    aataaacaattaacaaacgc 71
             ||||||||||||||||||||
Sbjct: 32499 aataaacaattaacaaacgc 32480



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>gb|AC016868.8| Homo sapiens chromosome 8, clone RP11-15G16, complete sequence
          Length = 155691

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   gcaaaaggaaaacaaaaaat 173
             ||||||||||||||||||||
Sbjct: 38279 gcaaaaggaaaacaaaaaat 38298



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>gb|AC016602.7| Homo sapiens chromosome 5 clone CTD-2061O12, complete sequence
          Length = 186265

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 155    caaaaggaaaacaaaaaatctggt 178
              ||||||||||| ||||||||||||
Sbjct: 181826 caaaaggaaaaaaaaaaatctggt 181803



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 52       aataaacaattaacaaacgc 71
                ||||||||||||||||||||
Sbjct: 24143274 aataaacaattaacaaacgc 24143255



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>gb|AC025754.4|AC025754 Homo sapiens chromosome 5 clone CTD-2024P10, complete sequence
          Length = 157365

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 155   caaaaggaaaacaaaaaatctggt 178
             ||||||||||| ||||||||||||
Sbjct: 70546 caaaaggaaaaaaaaaaatctggt 70569



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>gb|AY107973.1| Zea mays PCO099381 mRNA sequence
          Length = 935

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 282 tacttctcagcatgtcggcgcttgtgtctcctattgccatggtt 325
           ||||| ||||||||||| ||||||| |||| | | |||||||||
Sbjct: 589 tacttgtcagcatgtcgccgcttgtatctcttgtggccatggtt 546



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>dbj|AP001525.6| Homo sapiens genomic DNA, chromosome 18 clone:RP11-720L3, complete
              sequence
          Length = 175581

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    aaaggaaaacaaaaaatctg 176
              ||||||||||||||||||||
Sbjct: 132030 aaaggaaaacaaaaaatctg 132011


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,421,397
Number of Sequences: 3902068
Number of extensions: 4421397
Number of successful extensions: 93618
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93542
Number of HSP's gapped (non-prelim): 75
length of query: 370
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 348
effective length of database: 17,147,199,772
effective search space: 5967225520656
effective search space used: 5967225520656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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