Clone Name | rbart57d05 |
---|---|
Clone Library Name | barley_pub |
>dbj|AB011443.1| Triticum aestivum WESR2 mRNA, partial sequence Length = 760 Score = 216 bits (109), Expect = 4e-53 Identities = 171/189 (90%), Gaps = 2/189 (1%) Strand = Plus / Minus Query: 182 gtacagcgttccatccttctaccaataaacaggagcacagcctcatcagggaagaacatg 241 |||||||||||||||||||||||| | ||||||||| |||| |||||||||||| ||||| Sbjct: 760 gtacagcgttccatccttctacca-tgaacaggagcgcagc-tcatcagggaaggacatg 703 Query: 242 ctctgatttctgcaaccctagatggcactcaacggttgtttacttctcagcatgtcggcg 301 |||||||||||||||||||| |||||| | ||| | ||||||||||||||||||||||| Sbjct: 702 ctctgatttctgcaaccctacatggcagccgacgatagtttacttctcagcatgtcggcg 643 Query: 302 cttgtgtctcctattgccatggtttgtgttactatcacgagacgatctcttctgcttctt 361 ||||||||||||||||||||||||| ||||| || | ||| |||||||||||||||||| Sbjct: 642 cttgtgtctcctattgccatggtttccgttaccattaagaggcgatctcttctgcttctt 583 Query: 362 tgtgcagaa 370 |||||||| Sbjct: 582 cgtgcagaa 574
>ref|XM_483357.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1922 Score = 56.0 bits (28), Expect = 8e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 282 tacttctcagcatgtcggcgcttgtgtctcctattgccatggtt 325 ||||| |||||||| ||||||||||||||||||| ||| ||||| Sbjct: 1544 tacttatcagcatgccggcgcttgtgtctcctatggccgtggtt 1501
>gb|AY224462.1| Oryza sativa (japonica cultivar-group) isolate 23522 unknown mRNA Length = 960 Score = 56.0 bits (28), Expect = 8e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 282 tacttctcagcatgtcggcgcttgtgtctcctattgccatggtt 325 ||||| |||||||| ||||||||||||||||||| ||| ||||| Sbjct: 959 tacttatcagcatgccggcgcttgtgtctcctatggccgtggtt 916
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 56.0 bits (28), Expect = 8e-05 Identities = 40/44 (90%) Strand = Plus / Plus Query: 282 tacttctcagcatgtcggcgcttgtgtctcctattgccatggtt 325 ||||| |||||||| ||||||||||||||||||| ||| ||||| Sbjct: 25792411 tacttatcagcatgccggcgcttgtgtctcctatggccgtggtt 25792454
>dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0689E12 Length = 147516 Score = 56.0 bits (28), Expect = 8e-05 Identities = 40/44 (90%) Strand = Plus / Plus Query: 282 tacttctcagcatgtcggcgcttgtgtctcctattgccatggtt 325 ||||| |||||||| ||||||||||||||||||| ||| ||||| Sbjct: 64622 tacttatcagcatgccggcgcttgtgtctcctatggccgtggtt 64665
>dbj|AB118016.1| Oryza sativa (japonica cultivar-group) bip129 mRNA for BRI1-KD interacting protein 129, partial cds Length = 522 Score = 56.0 bits (28), Expect = 8e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 282 tacttctcagcatgtcggcgcttgtgtctcctattgccatggtt 325 ||||| |||||||| ||||||||||||||||||| ||| ||||| Sbjct: 246 tacttatcagcatgccggcgcttgtgtctcctatggccgtggtt 203
>dbj|AK070323.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052N10, full insert sequence Length = 1922 Score = 56.0 bits (28), Expect = 8e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 282 tacttctcagcatgtcggcgcttgtgtctcctattgccatggtt 325 ||||| |||||||| ||||||||||||||||||| ||| ||||| Sbjct: 1543 tacttatcagcatgccggcgcttgtgtctcctatggccgtggtt 1500
>emb|AL023806.1|HS466P17 Human DNA sequence from clone RP3-466P17 on chromosome 6q24 Contains the 5' end of the EPM2A gene for progressive myoclonus type 2 epilepsy (Lafora disease) protein (laforin) and a CpG island, complete sequence Length = 149963 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 gcaaaaggaaaacaaaaaatc 174 ||||||||||||||||||||| Sbjct: 12459 gcaaaaggaaaacaaaaaatc 12439
>gb|BT017482.1| Zea mays clone EL01N0412B11.c mRNA sequence Length = 1016 Score = 40.1 bits (20), Expect = 4.9 Identities = 38/44 (86%) Strand = Plus / Minus Query: 282 tacttctcagcatgtcggcgcttgtgtctcctattgccatggtt 325 ||||| ||||||||||| ||||||| |||| | | ||||||||| Sbjct: 685 tacttgtcagcatgtcgccgcttgtatctcttgtggccatggtt 642
>gb|AY596608.1| Saccharum officinarum clone SCCCRZ1001G11, complete sequence Length = 1735 Score = 40.1 bits (20), Expect = 4.9 Identities = 38/44 (86%) Strand = Plus / Plus Query: 282 tacttctcagcatgtcggcgcttgtgtctcctattgccatggtt 325 ||||| ||||| ||||| |||||||||||| | | ||||||||| Sbjct: 416 tacttgtcagcgtgtcgccgcttgtgtctcttgtggccatggtt 459
>gb|AC174830.3| Myotis lucifugus clone CH235-234J19, complete sequence Length = 196835 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 caaaaggaaaacaaaaaatc 174 |||||||||||||||||||| Sbjct: 35354 caaaaggaaaacaaaaaatc 35373
>emb|AL606623.3|OSJN00053 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081L15, complete sequence Length = 150864 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 aataaacaattaacaaacgc 71 |||||||||||||||||||| Sbjct: 32499 aataaacaattaacaaacgc 32480
>gb|AC016868.8| Homo sapiens chromosome 8, clone RP11-15G16, complete sequence Length = 155691 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 gcaaaaggaaaacaaaaaat 173 |||||||||||||||||||| Sbjct: 38279 gcaaaaggaaaacaaaaaat 38298
>gb|AC016602.7| Homo sapiens chromosome 5 clone CTD-2061O12, complete sequence Length = 186265 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 caaaaggaaaacaaaaaatctggt 178 ||||||||||| |||||||||||| Sbjct: 181826 caaaaggaaaaaaaaaaatctggt 181803
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 aataaacaattaacaaacgc 71 |||||||||||||||||||| Sbjct: 24143274 aataaacaattaacaaacgc 24143255
>gb|AC025754.4|AC025754 Homo sapiens chromosome 5 clone CTD-2024P10, complete sequence Length = 157365 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 155 caaaaggaaaacaaaaaatctggt 178 ||||||||||| |||||||||||| Sbjct: 70546 caaaaggaaaaaaaaaaatctggt 70569
>gb|AY107973.1| Zea mays PCO099381 mRNA sequence Length = 935 Score = 40.1 bits (20), Expect = 4.9 Identities = 38/44 (86%) Strand = Plus / Minus Query: 282 tacttctcagcatgtcggcgcttgtgtctcctattgccatggtt 325 ||||| ||||||||||| ||||||| |||| | | ||||||||| Sbjct: 589 tacttgtcagcatgtcgccgcttgtatctcttgtggccatggtt 546
>dbj|AP001525.6| Homo sapiens genomic DNA, chromosome 18 clone:RP11-720L3, complete sequence Length = 175581 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 aaaggaaaacaaaaaatctg 176 |||||||||||||||||||| Sbjct: 132030 aaaggaaaacaaaaaatctg 132011 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,421,397 Number of Sequences: 3902068 Number of extensions: 4421397 Number of successful extensions: 93618 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93542 Number of HSP's gapped (non-prelim): 75 length of query: 370 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 348 effective length of database: 17,147,199,772 effective search space: 5967225520656 effective search space used: 5967225520656 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)