>RISA_YEAST (P38145) Riboflavin synthase alpha chain (EC 2.5.1.9)|
          Length = 238

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 28/63 (44%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
 Frame = -3

Query: 508 VDGTSLTVVNVN--EEAGWFDFMLVRYTQDNVVLPRKKVGDKVNLEADILGKYVVKLLAG 335
           +DGTSLT++ V+   + G F   ++++TQDNV++P KK+GD+VN+E D+ GK + K +  
Sbjct: 148 IDGTSLTIIKVDPLSQGGAFYISMIKHTQDNVIMPLKKIGDEVNIEVDLTGKIIEKQILL 207

Query: 334 RLE 326
            LE
Sbjct: 208 TLE 210

>RISA_SCHPO (Q9Y7P0) Riboflavin synthase alpha chain (EC 2.5.1.9)|
          Length = 208

 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 27/61 (44%), Positives = 41/61 (67%)
 Frame = -3

Query: 511 AVDGTSLTVVNVNEEAGWFDFMLVRYTQDNVVLPRKKVGDKVNLEADILGKYVVKLLAGR 332
           A+DGTSLT+ +V++    F  M++ YTQ  V++ +K VGD VN+E D +GKY  KL+   
Sbjct: 141 ALDGTSLTITHVDDST--FSIMMISYTQSKVIMAKKNVGDLVNVEVDQIGKYTEKLVEAH 198

Query: 331 L 329
           +
Sbjct: 199 I 199

>RISA_MYCTU (P65327) Riboflavin synthase alpha chain (EC 2.5.1.9)|
          Length = 201

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = -3

Query: 508 VDGTSLTVVNVN-EEAGWFDFMLVRYTQDNVVLPRKKVGDKVNLEADILGKYVVKLL 341
           VDG SLTV  +  E+  WF+  L+  T++   L    VG +VNLE D++ KYV +L+
Sbjct: 141 VDGISLTVSGLGAEQRDWFEVSLIPTTRELTTLGSAAVGTRVNLEVDVVAKYVERLM 197

>RISA_MYCBO (P65328) Riboflavin synthase alpha chain (EC 2.5.1.9)|
          Length = 201

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = -3

Query: 508 VDGTSLTVVNVN-EEAGWFDFMLVRYTQDNVVLPRKKVGDKVNLEADILGKYVVKLL 341
           VDG SLTV  +  E+  WF+  L+  T++   L    VG +VNLE D++ KYV +L+
Sbjct: 141 VDGISLTVSGLGAEQRDWFEVSLIPTTRELTTLGSAAVGTRVNLEVDVVAKYVERLM 197

>RISA_AQUAE (O67604) Riboflavin synthase alpha chain (EC 2.5.1.9)|
          Length = 207

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 26/57 (45%), Positives = 36/57 (63%)
 Frame = -3

Query: 511 AVDGTSLTVVNVNEEAGWFDFMLVRYTQDNVVLPRKKVGDKVNLEADILGKYVVKLL 341
           A+DG SLTV  V E   + +  ++ +T  +  L  KKVGD +N+E DILGKYV+  L
Sbjct: 137 ALDGISLTVNYVKENKVFIN--IIPHTYKSTNLQFKKVGDLLNVETDILGKYVINYL 191

>RISA_ACTPL (P50854) Riboflavin synthase alpha chain (EC 2.5.1.9)|
          Length = 215

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 24/56 (42%), Positives = 36/56 (64%)
 Frame = -3

Query: 508 VDGTSLTVVNVNEEAGWFDFMLVRYTQDNVVLPRKKVGDKVNLEADILGKYVVKLL 341
           +DG SLTVV+ ++E+  F   ++ +T     L  KK+G  VNLE DI+GKY+ + L
Sbjct: 140 IDGISLTVVDTDDES--FRVSIIPHTIKETNLGSKKIGSIVNLENDIVGKYIEQFL 193

>RISA_BACSU (P16440) Riboflavin synthase alpha chain (EC 2.5.1.9)|
          Length = 215

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 20/56 (35%), Positives = 32/56 (57%)
 Frame = -3

Query: 508 VDGTSLTVVNVNEEAGWFDFMLVRYTQDNVVLPRKKVGDKVNLEADILGKYVVKLL 341
           VDG SLT+  + E+       L+ +T    +   K +G KVN+E D++GKY+ + L
Sbjct: 140 VDGVSLTIFGLTEDT--VTISLIPHTISETIFSEKTIGSKVNIECDMIGKYMYRFL 193

>RISA_PHOPO (P51961) Riboflavin synthase alpha chain (EC 2.5.1.9)|
          Length = 218

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
 Frame = -3

Query: 508 VDGTSLTV--VNVNEEAGWFDFMLVRYTQDNVVLPRKKVGDKVNLEADILGKYVVKLL 341
           VDG SLTV  V  NE    F   +V +T     +   KVG+KVN+E D+L +Y+ +LL
Sbjct: 141 VDGVSLTVNAVTGNE----FKLTIVPHTVVETTIADFKVGNKVNIEVDVLARYIERLL 194

>RISA_BACAM (Q44680) Riboflavin synthase alpha chain (EC 2.5.1.9)|
          Length = 215

 Score = 37.4 bits (85), Expect = 0.024
 Identities = 18/56 (32%), Positives = 32/56 (57%)
 Frame = -3

Query: 508 VDGTSLTVVNVNEEAGWFDFMLVRYTQDNVVLPRKKVGDKVNLEADILGKYVVKLL 341
           VDG S T+  +++E+      ++ +T    +   K VG  VN+E D++GKY+ + L
Sbjct: 140 VDGVSSTIFGLSDES--VTVSVIPHTISETIFRTKAVGSIVNIECDMIGKYLYRFL 193

>RISA_CHLPN (Q9Z820) Riboflavin synthase alpha chain (EC 2.5.1.9)|
          Length = 200

 Score = 36.6 bits (83), Expect = 0.041
 Identities = 20/54 (37%), Positives = 32/54 (59%)
 Frame = -3

Query: 511 AVDGTSLTVVNVNEEAGWFDFMLVRYTQDNVVLPRKKVGDKVNLEADILGKYVV 350
           A+DG SLT+V+V+ +   F   L+  T     L +K+ G++VN+E D+  K  V
Sbjct: 136 AIDGISLTLVSVDSDT--FSVGLIPETLQRTTLGKKREGERVNIEIDMSTKIQV 187



 Score = 32.0 bits (71), Expect = 1.0
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = -3

Query: 511 AVDGTSLTVVNVNEEAGWFDFMLVRYTQDNVVLPRKKVGDKVNLEA 374
           AVDG  LT+ + NE   +FD  ++  T     L  K+  D+VNLEA
Sbjct: 43  AVDGVCLTLTSCNESKIFFD--VIPETLACTTLGEKRCSDQVNLEA 86

>RISA_HAEIN (P45273) Riboflavin synthase alpha chain (EC 2.5.1.9)|
          Length = 204

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 22/62 (35%), Positives = 33/62 (53%)
 Frame = -3

Query: 511 AVDGTSLTVVNVNEEAGWFDFMLVRYTQDNVVLPRKKVGDKVNLEADILGKYVVKLLAGR 332
           AVDG SLT+  V +    F   L+  T    ++ R+KVGD VN+E D   + +V  +   
Sbjct: 141 AVDGISLTIGEVRDTQ--FCVNLIPETLQRTLMGRRKVGDIVNIEIDPQTQAIVDTVENY 198

Query: 331 LE 326
           L+
Sbjct: 199 LQ 200

>RISA_BUCAP (Q8KA22) Riboflavin synthase alpha chain (EC 2.5.1.9)|
          Length = 208

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = -3

Query: 511 AVDGTSLTVVNVNEEAGWFDFMLVRYTQDNVVLPRKKVGDKVNLEADILGKYVV 350
           A+DG SLT+ N+ +    F   ++  T  +  +  KK+G  VN+E D   + +V
Sbjct: 141 AIDGISLTINNIIKNE--FCVSIIPETLSSTTIGFKKIGQLVNIEIDFYTQIIV 192

>RISA_SHIFL (P0AFU9) Riboflavin synthase alpha chain (EC 2.5.1.9)|
          Length = 213

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = -3

Query: 508 VDGTSLTVVNVNEEAGWFDFMLVRYTQDNVVLPRKKVGDKVNLEADILGKYVV----KLL 341
           +DG SLTV  V      F   L+  T +   L +KK+G +VN+E D   + VV    ++L
Sbjct: 142 IDGISLTVGEVTPTR--FCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVL 199

Query: 340 AGR 332
           A R
Sbjct: 200 AAR 202

>RISA_ECOLI (P0AFU8) Riboflavin synthase alpha chain (EC 2.5.1.9)|
          Length = 213

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = -3

Query: 508 VDGTSLTVVNVNEEAGWFDFMLVRYTQDNVVLPRKKVGDKVNLEADILGKYVV----KLL 341
           +DG SLTV  V      F   L+  T +   L +KK+G +VN+E D   + VV    ++L
Sbjct: 142 IDGISLTVGEVTPTR--FCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVL 199

Query: 340 AGR 332
           A R
Sbjct: 200 AAR 202

>LAMA_DROME (Q00174) Laminin alpha chain precursor|
          Length = 3712

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
 Frame = -2

Query: 485 CQCERGGRVVRLHAC-ALHAGQCCAAQXXXXXXXXXXG*HTGEVCSEAACREIGGNIKGK 309
           C C+  G + +   C ++  G+ C  +             TG +C+E        NI   
Sbjct: 677 CNCDPAGVIDKFAGCGSVPVGELCKCKERV----------TGRICNECKPLYWNLNISNT 726

Query: 308 GSFLSCACWTDELPSLLVQC 249
                C CWTD   S L  C
Sbjct: 727 EGCEICDCWTDGTISALDTC 746

>RISA_BUCBP (Q89AX1) Riboflavin synthase alpha chain (EC 2.5.1.9)|
          Length = 212

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -3

Query: 508 VDGTSLTVVNVNEEAGWFDFMLVRYTQDNVVLPRKKVGDKVNLEADILGKYVV 350
           VDG SLT+ ++   A  F   L+  T     + +K +GD VN+E D   +  V
Sbjct: 142 VDGISLTIGSIKNNA--FCVFLIPETILRTTIGQKIIGDVVNIEIDFYTQITV 192

>FBLI1_PONPY (Q5REN1) Filamin-binding LIM protein 1|
          Length = 375

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -1

Query: 246 SCLSIIIMHFAVVSEAFFVLGVYNSCHCLFPCRSCSDSAWRSFFPVCMIC 97
           SC + +     +  E+F  LG  N  +CL       D  +R F PVC IC
Sbjct: 267 SCFTCVTCARCIGDESF-ALGSQNEVYCL-------DDFYRKFAPVCSIC 308

>FBLI1_HUMAN (Q8WUP2) Filamin-binding LIM protein 1 (Filamin-binding LIM protein|
           1) (FBLP-1) (Mitogen-inducible 2-interacting protein)
           (MIG2-interacting protein) (Migfilin)
          Length = 373

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -1

Query: 246 SCLSIIIMHFAVVSEAFFVLGVYNSCHCLFPCRSCSDSAWRSFFPVCMIC 97
           SC + +     +  E+F  LG  N  +CL       D  +R F PVC IC
Sbjct: 265 SCFTCVTCARCIGDESF-ALGSQNEVYCL-------DDFYRKFAPVCSIC 306

>LONH_HAEIN (P43865) Putative protease La homolog (EC 3.4.21.-)|
          Length = 601

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 365 GEVCSEAACREIGGNIKGKGSFLSCACWTD--ELPSLL 258
           GEV       E+ GNI GKG  ++ AC ++  +LPS L
Sbjct: 399 GEVIDVERKNELAGNIHGKGMMIAQACLSNILDLPSQL 436

>Y1452_GEOSL (Q74D67) Hypothetical RNA methyltransferase GSU1452 (EC 2.1.1.-)|
          Length = 495

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = +2

Query: 98  QIMHTGKKLLHAESLQLLHGNRQWHELYTPSTKKA-SLTTAKCIIIIDKQEYTALIAMVI 274
           ++ H GK+ LHAE++++L  +R    L  PS K+A S      I++    +         
Sbjct: 59  RLTHVGKRHLHAEAVEVLTPSRA--RLAQPSCKRAGSCDGCPLIVMHYPDQLNWKRTFTE 116

Query: 275 HQSNRHSSRSXXXXXXXXQSPCKQLHY 355
            Q  R+ +           SP  QLHY
Sbjct: 117 RQIRRYQTLGAAEVLATLPSP-NQLHY 142


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,674,645
Number of Sequences: 219361
Number of extensions: 1431671
Number of successful extensions: 3678
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3673
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3812186532
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)