ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart57d01 |
|---|---|
| Clone Library Name | barley_pub |
>PER55_ARATH (Q96509) Peroxidase 55 precursor (EC 1.11.1.7) (Atperox P55)| (ATP20a) Length = 330 Score = 46.2 bits (108), Expect = 5e-05 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Frame = -3 Query: 419 DKQYYQNVIDKKVLFTSD-AVLNSTETITQVTENANVAGAWERKFESAMENMGKIGSRPW 243 D YYQN++ +K LFTSD A+ N + V AN A + F SAM N+G++G + Sbjct: 258 DNSYYQNLVARKGLFTSDQALFNDLSSQATVVRFANNAEEFYSAFSSAMRNLGRVGVKVG 317 Query: 242 ETSKAQR 222 + +R Sbjct: 318 NQGEIRR 324
>PER46_ARATH (O81772) Peroxidase 46 precursor (EC 1.11.1.7) (Atperox P46)| (ATP48) Length = 326 Score = 34.3 bits (77), Expect = 0.18 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Frame = -3 Query: 419 DKQYYQNVIDKKVLFTSD-AVLNSTETITQVTENANVAGAWERKFESAMENMGKIGSRPW 243 D QYY+N+ K LF +D A++ T T V E A+ ++ +++ + + +G R Sbjct: 254 DNQYYRNLETHKGLFQTDSALMEDNRTRTMVEELASDEESFFQRWSESFVKLSMVGVRVG 313 Query: 242 ETSKAQRS 219 E + +RS Sbjct: 314 EDGEIRRS 321
>PER39_ARATH (Q9SUT2) Peroxidase 39 precursor (EC 1.11.1.7) (Atperox P39)| (ATP19a) Length = 326 Score = 33.9 bits (76), Expect = 0.23 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Frame = -3 Query: 419 DKQYYQNVIDKKVLFTSDAVLNSTETITQVTENANVAGAWER----KFESAMENMGKIGS 252 D YY+ V+ ++ LF SDA L T + + AG E+ +F ++ME MG+IG Sbjct: 253 DLSYYRLVLKRRGLFESDAAL--TMNPAALAQVKRFAGGSEQEFFAEFSNSMEKMGRIGV 310 Query: 251 RPWETSKAQRS 219 + + +R+ Sbjct: 311 KTGSDGEIRRT 321
>PER23_ARATH (O80912) Peroxidase 23 precursor (EC 1.11.1.7) (Atperox P23)| (ATP34) Length = 349 Score = 33.5 bits (75), Expect = 0.30 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 3/75 (4%) Frame = -3 Query: 473 NGXXXXXXXXXXXXXXVLDKQYYQNVIDKKVLFTSDAVLNST---ETITQVTENANVAGA 303 NG D+QYY N+++ K L SD VL ST +TI V + ++ Sbjct: 241 NGNGTVLVNFDSVTPTTFDRQYYTNLLNGKGLIQSDQVLFSTPGADTIPLVNQYSSNTFV 300 Query: 302 WERKFESAMENMGKI 258 + F AM MG + Sbjct: 301 FFGAFVDAMIRMGNL 315
>PER51_ARATH (Q9SZE7) Peroxidase 51 precursor (EC 1.11.1.7) (Atperox P51)| (ATP37) Length = 329 Score = 32.7 bits (73), Expect = 0.52 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 2/68 (2%) Frame = -3 Query: 419 DKQYYQNVIDKKVLFTSDAVLNSTETITQVTEN--ANVAGAWERKFESAMENMGKIGSRP 246 D YY+N+ K LFTSD VL T++ ++ T + AN + + F S+M +G++G + Sbjct: 257 DNVYYKNLQQGKGLFTSDQVL-FTDSRSKPTVDLWANNGQLFNQAFISSMIKLGRVGVKT 315 Query: 245 WETSKAQR 222 +R Sbjct: 316 GSNGNIRR 323
>PER1B_ARMRU (P15232) Peroxidase C1B precursor (EC 1.11.1.7)| Length = 351 Score = 32.0 bits (71), Expect = 0.88 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%) Frame = -3 Query: 419 DKQYYQNVIDKKVLFTSDAVL----NSTETITQVTENANVAGAWERKFESAMENMGKI 258 D +YY N+ ++K L SD L N+T+TI V A+ + F AM MG I Sbjct: 258 DNKYYVNLKEQKGLIQSDQELFSSPNATDTIPLVRSFADGTQKFFNAFVEAMNRMGNI 315
>PER32_ARATH (Q9LHB9) Peroxidase 32 precursor (EC 1.11.1.7) (Atperox P32)| (PRXR3) (ATP16a) Length = 352 Score = 32.0 bits (71), Expect = 0.88 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%) Frame = -3 Query: 419 DKQYYQNVIDKKVLFTSDAVL----NSTETITQVTENANVAGAWERKFESAMENMGKI 258 D +YY N+ + K L +D L N+T+TI V E A+ + F AM MG I Sbjct: 259 DNKYYVNLKELKGLIQTDQELFSSPNATDTIPLVREYADGTQKFFNAFVEAMNRMGNI 316
>Q300_MOUSE (Q02722) Protein Q300| Length = 77 Score = 31.6 bits (70), Expect = 1.2 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = -1 Query: 94 WFSYTKIMYACVCQCVCLFRCI 29 W T + Y CVC CVC+ C+ Sbjct: 18 WEGETNLFYVCVCVCVCVCVCV 39
>AEGP_RAT (Q63191) Apical endosomal glycoprotein precursor| Length = 1216 Score = 31.2 bits (69), Expect = 1.5 Identities = 16/53 (30%), Positives = 27/53 (50%) Frame = -3 Query: 311 AGAWERKFESAMENMGKIGSRPWETSKAQRSGRYAGESTTNAGQYSVAMRGSW 153 AG WE IG W+ ++AQ SG+ A ++ NA + +++R +W Sbjct: 499 AGGWEDI---------SIGKLQWQRAEAQESGKPARDTNRNAPGHFLSLRKAW 542
>PER18_ARATH (Q9SK52) Peroxidase 18 precursor (EC 1.11.1.7) (Atperox P18)| Length = 329 Score = 31.2 bits (69), Expect = 1.5 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Frame = -3 Query: 419 DKQYYQNVIDKKVLFTSDAVLNSTETITQVTE-NANVAGAWERKFESAMENMGKIGSRPW 243 D QYY+N++ K LF +D+ L + ++ E AN ++ ++ + M +G R Sbjct: 257 DNQYYKNLLAHKGLFQTDSALMEDDRTRKIVEILANDQESFFDRWTESFLKMSLMGVRVG 316 Query: 242 ETSKAQRS 219 E + +RS Sbjct: 317 EEGEIRRS 324
>PER22_ARATH (P24102) Peroxidase 22 precursor (EC 1.11.1.7) (Atperox P22)| (ATPEa) (Basic peroxidase E) Length = 349 Score = 31.2 bits (69), Expect = 1.5 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Frame = -3 Query: 419 DKQYYQNVIDKKVLFTSDAVLNST---ETITQVTENANVAGAWERKFESAMENMGKI 258 D QYY N+ + K L SD L ST +TI V + ++ + R F AM MG + Sbjct: 259 DSQYYTNLRNGKGLIQSDQELFSTPGADTIPLVNQYSSDMSVFFRAFIDAMIRMGNL 315
>PER50_ARATH (Q43731) Peroxidase 50 precursor (EC 1.11.1.7) (Atperox P50)| (PRXR2) (ATP9a) Length = 329 Score = 30.8 bits (68), Expect = 2.0 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%) Frame = -3 Query: 419 DKQYYQNVIDKKVLFTSDAVLNSTETITQVTEN--ANVAGAWERKFESAMENMGKIGSRP 246 D YY+N+ K LFTSD VL T+ ++ T + AN + + F ++M +G++G + Sbjct: 257 DNVYYKNLQQGKGLFTSDQVL-FTDRRSKPTVDLWANNGQLFNQAFINSMIKLGRVGVKT 315 Query: 245 WETSKAQR 222 +R Sbjct: 316 GSNGNIRR 323
>DHX9_XENLA (Q68FK8) ATP-dependent RNA helicase A-like protein (EC 3.6.1.-)| (Nuclear DNA helicase II) (NDH II) (DEAH box protein 9) Length = 1262 Score = 30.8 bits (68), Expect = 2.0 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +3 Query: 288 ELPLPRPGHVRVFCHLRYRFSRVEHGVRGEQHFLVNHI 401 E LPRP +FC + ++E G+RG H +V+ I Sbjct: 478 ESVLPRPHASMLFCTVGVLLRKLESGIRGISHVIVDEI 515
>PER2_CUCSA (P19135) Peroxidase 2 (EC 1.11.1.7) (CUP2) (Fragment)| Length = 292 Score = 30.4 bits (67), Expect = 2.6 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%) Frame = -3 Query: 419 DKQYYQNVIDKKVLFTSDAVLNST---ETITQVTENANVAGAWERKFESAMENMGKI 258 DK YY N+ TSD VL+ST +T+ V A + F +M NMG I Sbjct: 218 DKNYYTNLQSNTGPLTSDQVLHSTPGEDTVKIVNLFAASQNQFFESFGQSMINMGNI 274
>PER43_ARATH (Q9SZH2) Peroxidase 43 precursor (EC 1.11.1.7) (Atperox P43)| Length = 326 Score = 30.0 bits (66), Expect = 3.3 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 6/61 (9%) Frame = -3 Query: 419 DKQYYQNVIDKKVLFTSDAVLNSTETITQVTE------NANVAGAWERKFESAMENMGKI 258 DKQ QN+ D + +DA L T QV + N +E F A+ MGKI Sbjct: 249 DKQILQNIKDGFAVLQTDAGLYEDVTTRQVVDSYLGMLNPFFGPTFESDFVKAIVKMGKI 308 Query: 257 G 255 G Sbjct: 309 G 309
>PER59_ARATH (Q39034) Peroxidase 59 precursor (EC 1.11.1.7) (Atperox P59)| (Peroxidase N) (ATPN) Length = 328 Score = 30.0 bits (66), Expect = 3.3 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 7/63 (11%) Frame = -3 Query: 419 DKQYYQNVIDKK-------VLFTSDAVLNSTETITQVTENANVAGAWERKFESAMENMGK 261 D Y++N+++ K +LF+SD +N+T+ + + + + R F AM MG Sbjct: 253 DNNYFKNLLEGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQ--SLFFRDFTCAMIRMGN 310 Query: 260 IGS 252 I + Sbjct: 311 ISN 313
>CR023_HUMAN (Q8NB54) Protein C18orf23| Length = 160 Score = 29.6 bits (65), Expect = 4.4 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 3/28 (10%) Frame = -1 Query: 103 CRCW---FSYTKIMYACVCQCVCLFRCI 29 C C ++ ++ + ACVC CVCL+ C+ Sbjct: 42 CLCMTVAYTGSRCLGACVCVCVCLYVCV 69
>PER24_ARATH (Q9ZV04) Peroxidase 24 precursor (EC 1.11.1.7) (Atperox P24)| (ATP47) Length = 350 Score = 29.6 bits (65), Expect = 4.4 Identities = 16/54 (29%), Positives = 27/54 (50%) Frame = -3 Query: 419 DKQYYQNVIDKKVLFTSDAVLNSTETITQVTENANVAGAWERKFESAMENMGKI 258 D Y+ +++ K LFTSDA L + + + +GA+ +F +M M I Sbjct: 277 DSGYFVSLLKNKGLFTSDAALLTDPSAAHIASVFQNSGAFLAQFGRSMIKMSSI 330
>DHX9_HUMAN (Q08211) ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear DNA| helicase II) (NDH II) (DEAH box protein 9) Length = 1270 Score = 29.3 bits (64), Expect = 5.7 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +3 Query: 297 LPRPGHVRVFCHLRYRFSRVEHGVRGEQHFLVNHI 401 LPRP +FC + ++E G+RG H +V+ I Sbjct: 479 LPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEI 513
>DHX9_BOVIN (Q28141) ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear DNA| helicase II) (NDH II) (DEAH box protein 9) Length = 1287 Score = 29.3 bits (64), Expect = 5.7 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +3 Query: 297 LPRPGHVRVFCHLRYRFSRVEHGVRGEQHFLVNHI 401 LPRP +FC + ++E G+RG H +V+ I Sbjct: 476 LPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEI 510
>PCK2_SCHPO (P36583) Protein kinase C-like 2 (EC 2.7.11.13)| Length = 1016 Score = 29.3 bits (64), Expect = 5.7 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 10/49 (20%) Frame = +2 Query: 368 PR*TTLSCQSHSDSTAYPERRGSHRL----------GSRWCCHCRCTVP 484 P+ T SDS + + +HR+ G+ WCCHC +P Sbjct: 447 PKVVTKCISKSSDSASSEYEKINHRIPHHFESHTNIGANWCCHCGYILP 495
>DHX9_PONPY (Q5R874) ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear DNA| helicase II) (NDH II) (DEAH box protein 9) Length = 1269 Score = 29.3 bits (64), Expect = 5.7 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +3 Query: 297 LPRPGHVRVFCHLRYRFSRVEHGVRGEQHFLVNHI 401 LPRP +FC + ++E G+RG H +V+ I Sbjct: 479 LPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEI 513
>DHX9_MOUSE (O70133) ATP-dependent RNA helicase A (EC 3.6.1.-) (Nuclear DNA| helicase II) (NDH II) (DEAH box protein 9) (mHEL-5) Length = 1380 Score = 29.3 bits (64), Expect = 5.7 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +3 Query: 297 LPRPGHVRVFCHLRYRFSRVEHGVRGEQHFLVNHI 401 LPRP +FC + ++E G+RG H +V+ I Sbjct: 481 LPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEI 515
>SEPT3_MOUSE (Q9Z1S5) Neuronal-specific septin-3| Length = 465 Score = 29.3 bits (64), Expect = 5.7 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%) Frame = -1 Query: 97 CWF--SYTKIMYACVCQCVCLFRCI-INK*LCVF 5 CW+ S + CVC CVC++ C+ + + CV+ Sbjct: 362 CWYLCSILSSVCVCVCVCVCMYVCMCVMESACVY 395
>GLGA_THIDA (Q3SH79) Glycogen synthase (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase) Length = 493 Score = 28.9 bits (63), Expect = 7.5 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Frame = +1 Query: 127 HRGIR-HGAGQLPRIATEY*PALVVDSPAYLPDLCALLVSHGLDPIL 264 H G+ HG + + Y A+ SP Y ++C +GLD +L Sbjct: 193 HEGVEFHGGFSMLKAGIVYADAVTTVSPTYAEEICTPAFGYGLDGLL 239
>ANKK1_MOUSE (Q8BZ25) Ankyrin repeat and protein kinase domain-containing| protein 1 (EC 2.7.11.1) Length = 745 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/29 (48%), Positives = 18/29 (62%) Frame = +1 Query: 169 ATEY*PALVVDSPAYLPDLCALLVSHGLD 255 A+ Y P L+ PDLCALL++HG D Sbjct: 401 ASGYTPLLIATQDQQ-PDLCALLLAHGAD 428
>SAA4_HUMAN (P35542) Serum amyloid A-4 protein precursor (Constitutively| expressed serum amyloid A protein) (C-SAA) Length = 130 Score = 28.5 bits (62), Expect = 9.7 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 5/78 (6%) Frame = -3 Query: 305 AWERKFESAMENMGKIGSRPWE--TSKAQRSGRYAGESTTNAGQYSVAMRGS---WPAPC 141 +W F+ A++ +G +G W+ S Q S RY G Y A RG W A Sbjct: 20 SWRSFFKEALQGVGDMGRAYWDIMISNHQNSNRY----LYARGNYDAAQRGPGGVWAAK- 74 Query: 140 LIPRWRSNFA*LVPLLVF 87 LI R R L+ +F Sbjct: 75 LISRSRVYLQGLIDYYLF 92
>RGS3_HUMAN (P49796) Regulator of G-protein signaling 3 (RGS3) (RGP3)| Length = 1198 Score = 28.5 bits (62), Expect = 9.7 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = +2 Query: 377 TTLSCQSHSDSTAYPE-RRGSHRLGSRWCCHCR 472 T L+ +SHSDST P GSHR CC CR Sbjct: 22 TILANRSHSDSTPLPNFLSGSHR---PECCTCR 51
>POLG_CXA24 (P36290) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2213 Score = 28.5 bits (62), Expect = 9.7 Identities = 16/40 (40%), Positives = 22/40 (55%) Frame = -3 Query: 392 DKKVLFTSDAVLNSTETITQVTENANVAGAWERKFESAME 273 +K +LFTSD VL ST + T + + A R+F ME Sbjct: 1339 EKGILFTSDYVLASTNSHTITPPTVSHSDALNRRFAFDME 1378
>MLE_DROME (P24785) Dosage compensation regulator (EC 3.6.1.-) (ATP-dependent| RNA helicase mle) (Protein male-less) (Protein no action potential) Length = 1293 Score = 28.5 bits (62), Expect = 9.7 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = +3 Query: 288 ELPLPRPGHVRVFCHLRYRFSRVEHGVRGEQHFLVNHI 401 E PRP +FC + ++E G+RG H +V+ I Sbjct: 472 ESVFPRPYGAILFCTVGVLLRKLEAGLRGVSHIIVDEI 509
>LEA76_BRANA (P13934) Late embryogenesis abundant protein 76 (LEA 76)| Length = 280 Score = 28.5 bits (62), Expect = 9.7 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 7/74 (9%) Frame = -3 Query: 374 TSDAVLNSTETITQVTENAN--VAGAWERKFESAMENMGKIGSRPWETS-----KAQRSG 216 TS A + + + T+++ + A + E A E K GS ET KAQ + Sbjct: 105 TSQAAQTTQQKAHETTQSSKEKTSQAAQTAQEKARETKDKTGSYLSETGEAVKQKAQDAA 164 Query: 215 RYAGESTTNAGQYS 174 +Y E+ NA QY+ Sbjct: 165 QYTKETAQNAAQYT 178
>PER3_ARMRU (P17180) Peroxidase C3 precursor (EC 1.11.1.7)| Length = 349 Score = 28.5 bits (62), Expect = 9.7 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Frame = -3 Query: 419 DKQYYQNVIDKKVLFTSDAVLNST---ETITQVTENANVAGAWERKFESAMENMGKI 258 D+QYY N+ + K L SD L ST +TI V ++ A+ F AM MG + Sbjct: 259 DRQYYTNLRNGKGLIQSDQELFSTPGADTIPLVNLYSSNTFAFFGAFVDAMIRMGNL 315 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,768,394 Number of Sequences: 219361 Number of extensions: 1136316 Number of successful extensions: 3129 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 3029 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3122 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
