ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart57c12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 291 bits (147), Expect = 1e-75 Identities = 270/311 (86%) Strand = Plus / Plus Query: 123 tgatcccggcggtgacgttgaagtactggagcgtggtcgcccagcgtcggttgtccttga 182 ||||||||||||||||||||||||| || || | |||||| || ||||||||||||| Sbjct: 15842341 tgatcccggcggtgacgttgaagtagctgaacgccgccgcccaccggcggttgtccttga 15842400 Query: 183 gcatgtgcacggcgacgctgtccggccgcaggttgtccatgtcccagctgaggtcgtaca 242 ||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||| Sbjct: 15842401 gcatgtgcacggcgacggtgtccggccggaagttgtccatgtcccagctgaggtcgtaca 15842460 Query: 243 tccgcggcttgaggtcgtacctgttcttccccttgccggcgaggttgagccacttgccga 302 ||||||||||||||||||| | ||| || |||||||||||||||||||| |||| Sbjct: 15842461 tccgcggcttgaggtcgtagcgattccggccgcgtccggcgaggttgagccacttcccga 15842520 Query: 303 gcatcaggtcctccggccccagcgtgtcgttccgcgccaggatctcctccgccgtcgaca 362 ||| |||||||| |||||| ||||||||| ||||| ||||||||||||||||| |||| Sbjct: 15842521 ccatgaggtcctcgggcccctccgtgtcgttgcgcgcgaggatctcctccgccgtggaca 15842580 Query: 363 cccagctcgccaggtcccaggacatgacgtaccccatgccgtgcatgaacagcatcgggt 422 |||| |||| | |||||| |||| ||||||||||||||||||||||||| ||||||| | Sbjct: 15842581 cccacgtcgcgacgtcccacgacacgacgtaccccatgccgtgcatgaacggcatcggct 15842640 Query: 423 cgccgctcatg 433 ||||| |||| Sbjct: 15842641 ggccgcccatg 15842651 Score = 200 bits (101), Expect = 3e-48 Identities = 278/337 (82%) Strand = Plus / Plus Query: 88 gatcgatcacggcaggtggtacagcttggacggcctgatcccggcggtgacgttgaagta 147 ||||||||| || | ||||||||| ||||||||| || ||||||||||||||||||||| Sbjct: 15837269 gatcgatcatgggaagtggtacaggttggacggctggagcccggcggtgacgttgaagta 15837328 Query: 148 ctggagcgtggtcgcccagcgtcggttgtccttgagcatgtgcacggcgacgctgtccgg 207 | || || | |||||| || |||||||||||||||||||||||| |||| ||||||| Sbjct: 15837329 cctgaacgccgccgcccaccggcggttgtccttgagcatgtgcacgaggacggtgtccgg 15837388 Query: 208 ccgcaggttgtccatgtcccagctgaggtcgtacatccgcggcttgaggtcgtacctgtt 267 ||| | |||||||||||||||| |||||||||||||||||||| ||||| ||||| ||| Sbjct: 15837389 ccggaagttgtccatgtcccagttgaggtcgtacatccgcggcctgaggctgtaccggtt 15837448 Query: 268 cttccccttgccggcgaggttgagccacttgccgagcatcaggtcctccggccccagcgt 327 ||| ||| || | ||| ||||||||| || |||| | |||||||| || || |||| Sbjct: 15837449 cttgccccggcggccgatgttgagccatttcccgacgaggaggtcctcggggccgtgcgt 15837508 Query: 328 gtcgttccgcgccaggatctcctccgccgtcgacacccagctcgccaggtcccaggacat 387 |||||| | |||||| ||||| ||||||||||| |||| | ||||||||||| Sbjct: 15837509 gtcgttgtaccgcaggatgtcctcgttggtcgacacccacgtcgcgacgtcccaggacac 15837568 Query: 388 gacgtaccccatgccgtgcatgaacagcatcgggtcg 424 |||||| ||||| |||||||||||| ||||||||||| Sbjct: 15837569 gacgtagcccatcccgtgcatgaactgcatcgggtcg 15837605 Score = 93.7 bits (47), Expect = 5e-16 Identities = 140/171 (81%) Strand = Plus / Plus Query: 132 cggtgacgttgaagtactggagcgtggtcgcccagcgtcggttgtccttgagcatgtgca 191 ||||||||||||||| | ||| | || ||||| || ||||||| ||||||| |||||| Sbjct: 15855585 cggtgacgttgaagtgccggaacacggcggcccaccggcggttgttcttgagcctgtgca 15855644 Query: 192 cggcgacgctgtccggccgcaggttgtccatgtcccagctgaggtcgtacatccgcggct 251 |||||| | ||| ||||| | | ||||||||||||| ||| ||||||||||||||||| Sbjct: 15855645 cggcgatggtgttgggccggaactcgtccatgtcccagttgatgtcgtacatccgcggct 15855704 Query: 252 tgaggtcgtacctgttcttccccttgccggcgaggttgagccacttgccga 302 |||||| ||||| |||| ||| ||||| || |||||||||| |||||| Sbjct: 15855705 tgaggttgtaccggttccgtcccctgccgccggcgttgagccacctgccga 15855755 Score = 85.7 bits (43), Expect = 1e-13 Identities = 70/79 (88%) Strand = Plus / Plus Query: 129 cggcggtgacgttgaagtactggagcgtggtcgcccagcgtcggttgtccttgagcatgt 188 ||||||||| |||||||||||||||||| ||||||| || ||||||||||||||| || Sbjct: 15859468 cggcggtgaagttgaagtactggagcgtcctcgcccaccggcggttgtccttgagctggt 15859527 Query: 189 gcacggcgacgctgtccgg 207 ||||||||| | ||||||| Sbjct: 15859528 gcacggcgatggtgtccgg 15859546 Score = 83.8 bits (42), Expect = 4e-13 Identities = 60/66 (90%) Strand = Plus / Plus Query: 359 gacacccagctcgccaggtcccaggacatgacgtaccccatgccgtgcatgaacagcatc 418 |||||||||| ||| | ||||||||||| |||||| |||||||||||||||||| ||||| Sbjct: 15855812 gacacccagcgcgcgacgtcccaggacacgacgtagcccatgccgtgcatgaacggcatc 15855871 Query: 419 gggtcg 424 |||||| Sbjct: 15855872 gggtcg 15855877
>dbj|AP005747.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0039E17 Length = 144126 Score = 291 bits (147), Expect = 1e-75 Identities = 270/311 (86%) Strand = Plus / Plus Query: 123 tgatcccggcggtgacgttgaagtactggagcgtggtcgcccagcgtcggttgtccttga 182 ||||||||||||||||||||||||| || || | |||||| || ||||||||||||| Sbjct: 127527 tgatcccggcggtgacgttgaagtagctgaacgccgccgcccaccggcggttgtccttga 127586 Query: 183 gcatgtgcacggcgacgctgtccggccgcaggttgtccatgtcccagctgaggtcgtaca 242 ||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||| Sbjct: 127587 gcatgtgcacggcgacggtgtccggccggaagttgtccatgtcccagctgaggtcgtaca 127646 Query: 243 tccgcggcttgaggtcgtacctgttcttccccttgccggcgaggttgagccacttgccga 302 ||||||||||||||||||| | ||| || |||||||||||||||||||| |||| Sbjct: 127647 tccgcggcttgaggtcgtagcgattccggccgcgtccggcgaggttgagccacttcccga 127706 Query: 303 gcatcaggtcctccggccccagcgtgtcgttccgcgccaggatctcctccgccgtcgaca 362 ||| |||||||| |||||| ||||||||| ||||| ||||||||||||||||| |||| Sbjct: 127707 ccatgaggtcctcgggcccctccgtgtcgttgcgcgcgaggatctcctccgccgtggaca 127766 Query: 363 cccagctcgccaggtcccaggacatgacgtaccccatgccgtgcatgaacagcatcgggt 422 |||| |||| | |||||| |||| ||||||||||||||||||||||||| ||||||| | Sbjct: 127767 cccacgtcgcgacgtcccacgacacgacgtaccccatgccgtgcatgaacggcatcggct 127826 Query: 423 cgccgctcatg 433 ||||| |||| Sbjct: 127827 ggccgcccatg 127837 Score = 200 bits (101), Expect = 3e-48 Identities = 278/337 (82%) Strand = Plus / Plus Query: 88 gatcgatcacggcaggtggtacagcttggacggcctgatcccggcggtgacgttgaagta 147 ||||||||| || | ||||||||| ||||||||| || ||||||||||||||||||||| Sbjct: 122455 gatcgatcatgggaagtggtacaggttggacggctggagcccggcggtgacgttgaagta 122514 Query: 148 ctggagcgtggtcgcccagcgtcggttgtccttgagcatgtgcacggcgacgctgtccgg 207 | || || | |||||| || |||||||||||||||||||||||| |||| ||||||| Sbjct: 122515 cctgaacgccgccgcccaccggcggttgtccttgagcatgtgcacgaggacggtgtccgg 122574 Query: 208 ccgcaggttgtccatgtcccagctgaggtcgtacatccgcggcttgaggtcgtacctgtt 267 ||| | |||||||||||||||| |||||||||||||||||||| ||||| ||||| ||| Sbjct: 122575 ccggaagttgtccatgtcccagttgaggtcgtacatccgcggcctgaggctgtaccggtt 122634 Query: 268 cttccccttgccggcgaggttgagccacttgccgagcatcaggtcctccggccccagcgt 327 ||| ||| || | ||| ||||||||| || |||| | |||||||| || || |||| Sbjct: 122635 cttgccccggcggccgatgttgagccatttcccgacgaggaggtcctcggggccgtgcgt 122694 Query: 328 gtcgttccgcgccaggatctcctccgccgtcgacacccagctcgccaggtcccaggacat 387 |||||| | |||||| ||||| ||||||||||| |||| | ||||||||||| Sbjct: 122695 gtcgttgtaccgcaggatgtcctcgttggtcgacacccacgtcgcgacgtcccaggacac 122754 Query: 388 gacgtaccccatgccgtgcatgaacagcatcgggtcg 424 |||||| ||||| |||||||||||| ||||||||||| Sbjct: 122755 gacgtagcccatcccgtgcatgaactgcatcgggtcg 122791 Score = 93.7 bits (47), Expect = 5e-16 Identities = 140/171 (81%) Strand = Plus / Plus Query: 132 cggtgacgttgaagtactggagcgtggtcgcccagcgtcggttgtccttgagcatgtgca 191 ||||||||||||||| | ||| | || ||||| || ||||||| ||||||| |||||| Sbjct: 140771 cggtgacgttgaagtgccggaacacggcggcccaccggcggttgttcttgagcctgtgca 140830 Query: 192 cggcgacgctgtccggccgcaggttgtccatgtcccagctgaggtcgtacatccgcggct 251 |||||| | ||| ||||| | | ||||||||||||| ||| ||||||||||||||||| Sbjct: 140831 cggcgatggtgttgggccggaactcgtccatgtcccagttgatgtcgtacatccgcggct 140890 Query: 252 tgaggtcgtacctgttcttccccttgccggcgaggttgagccacttgccga 302 |||||| ||||| |||| ||| ||||| || |||||||||| |||||| Sbjct: 140891 tgaggttgtaccggttccgtcccctgccgccggcgttgagccacctgccga 140941 Score = 83.8 bits (42), Expect = 4e-13 Identities = 60/66 (90%) Strand = Plus / Plus Query: 359 gacacccagctcgccaggtcccaggacatgacgtaccccatgccgtgcatgaacagcatc 418 |||||||||| ||| | ||||||||||| |||||| |||||||||||||||||| ||||| Sbjct: 140998 gacacccagcgcgcgacgtcccaggacacgacgtagcccatgccgtgcatgaacggcatc 141057 Query: 419 gggtcg 424 |||||| Sbjct: 141058 gggtcg 141063
>dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1081_G10 Length = 107955 Score = 291 bits (147), Expect = 1e-75 Identities = 270/311 (86%) Strand = Plus / Plus Query: 123 tgatcccggcggtgacgttgaagtactggagcgtggtcgcccagcgtcggttgtccttga 182 ||||||||||||||||||||||||| || || | |||||| || ||||||||||||| Sbjct: 5467 tgatcccggcggtgacgttgaagtagctgaacgccgccgcccaccggcggttgtccttga 5526 Query: 183 gcatgtgcacggcgacgctgtccggccgcaggttgtccatgtcccagctgaggtcgtaca 242 ||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||| Sbjct: 5527 gcatgtgcacggcgacggtgtccggccggaagttgtccatgtcccagctgaggtcgtaca 5586 Query: 243 tccgcggcttgaggtcgtacctgttcttccccttgccggcgaggttgagccacttgccga 302 ||||||||||||||||||| | ||| || |||||||||||||||||||| |||| Sbjct: 5587 tccgcggcttgaggtcgtagcgattccggccgcgtccggcgaggttgagccacttcccga 5646 Query: 303 gcatcaggtcctccggccccagcgtgtcgttccgcgccaggatctcctccgccgtcgaca 362 ||| |||||||| |||||| ||||||||| ||||| ||||||||||||||||| |||| Sbjct: 5647 ccatgaggtcctcgggcccctccgtgtcgttgcgcgcgaggatctcctccgccgtggaca 5706 Query: 363 cccagctcgccaggtcccaggacatgacgtaccccatgccgtgcatgaacagcatcgggt 422 |||| |||| | |||||| |||| ||||||||||||||||||||||||| ||||||| | Sbjct: 5707 cccacgtcgcgacgtcccacgacacgacgtaccccatgccgtgcatgaacggcatcggct 5766 Query: 423 cgccgctcatg 433 ||||| |||| Sbjct: 5767 ggccgcccatg 5777 Score = 200 bits (101), Expect = 3e-48 Identities = 278/337 (82%) Strand = Plus / Plus Query: 88 gatcgatcacggcaggtggtacagcttggacggcctgatcccggcggtgacgttgaagta 147 ||||||||| || | ||||||||| ||||||||| || ||||||||||||||||||||| Sbjct: 395 gatcgatcatgggaagtggtacaggttggacggctggagcccggcggtgacgttgaagta 454 Query: 148 ctggagcgtggtcgcccagcgtcggttgtccttgagcatgtgcacggcgacgctgtccgg 207 | || || | |||||| || |||||||||||||||||||||||| |||| ||||||| Sbjct: 455 cctgaacgccgccgcccaccggcggttgtccttgagcatgtgcacgaggacggtgtccgg 514 Query: 208 ccgcaggttgtccatgtcccagctgaggtcgtacatccgcggcttgaggtcgtacctgtt 267 ||| | |||||||||||||||| |||||||||||||||||||| ||||| ||||| ||| Sbjct: 515 ccggaagttgtccatgtcccagttgaggtcgtacatccgcggcctgaggctgtaccggtt 574 Query: 268 cttccccttgccggcgaggttgagccacttgccgagcatcaggtcctccggccccagcgt 327 ||| ||| || | ||| ||||||||| || |||| | |||||||| || || |||| Sbjct: 575 cttgccccggcggccgatgttgagccatttcccgacgaggaggtcctcggggccgtgcgt 634 Query: 328 gtcgttccgcgccaggatctcctccgccgtcgacacccagctcgccaggtcccaggacat 387 |||||| | |||||| ||||| ||||||||||| |||| | ||||||||||| Sbjct: 635 gtcgttgtaccgcaggatgtcctcgttggtcgacacccacgtcgcgacgtcccaggacac 694 Query: 388 gacgtaccccatgccgtgcatgaacagcatcgggtcg 424 |||||| ||||| |||||||||||| ||||||||||| Sbjct: 695 gacgtagcccatcccgtgcatgaactgcatcgggtcg 731 Score = 93.7 bits (47), Expect = 5e-16 Identities = 140/171 (81%) Strand = Plus / Plus Query: 132 cggtgacgttgaagtactggagcgtggtcgcccagcgtcggttgtccttgagcatgtgca 191 ||||||||||||||| | ||| | || ||||| || ||||||| ||||||| |||||| Sbjct: 18711 cggtgacgttgaagtgccggaacacggcggcccaccggcggttgttcttgagcctgtgca 18770 Query: 192 cggcgacgctgtccggccgcaggttgtccatgtcccagctgaggtcgtacatccgcggct 251 |||||| | ||| ||||| | | ||||||||||||| ||| ||||||||||||||||| Sbjct: 18771 cggcgatggtgttgggccggaactcgtccatgtcccagttgatgtcgtacatccgcggct 18830 Query: 252 tgaggtcgtacctgttcttccccttgccggcgaggttgagccacttgccga 302 |||||| ||||| |||| ||| ||||| || |||||||||| |||||| Sbjct: 18831 tgaggttgtaccggttccgtcccctgccgccggcgttgagccacctgccga 18881 Score = 85.7 bits (43), Expect = 1e-13 Identities = 70/79 (88%) Strand = Plus / Plus Query: 129 cggcggtgacgttgaagtactggagcgtggtcgcccagcgtcggttgtccttgagcatgt 188 ||||||||| |||||||||||||||||| ||||||| || ||||||||||||||| || Sbjct: 22594 cggcggtgaagttgaagtactggagcgtcctcgcccaccggcggttgtccttgagctggt 22653 Query: 189 gcacggcgacgctgtccgg 207 ||||||||| | ||||||| Sbjct: 22654 gcacggcgatggtgtccgg 22672 Score = 83.8 bits (42), Expect = 4e-13 Identities = 60/66 (90%) Strand = Plus / Plus Query: 359 gacacccagctcgccaggtcccaggacatgacgtaccccatgccgtgcatgaacagcatc 418 |||||||||| ||| | ||||||||||| |||||| |||||||||||||||||| ||||| Sbjct: 18938 gacacccagcgcgcgacgtcccaggacacgacgtagcccatgccgtgcatgaacggcatc 18997 Query: 419 gggtcg 424 |||||| Sbjct: 18998 gggtcg 19003
>dbj|AK069858.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035N15, full insert sequence Length = 1074 Score = 291 bits (147), Expect = 1e-75 Identities = 270/311 (86%) Strand = Plus / Minus Query: 123 tgatcccggcggtgacgttgaagtactggagcgtggtcgcccagcgtcggttgtccttga 182 ||||||||||||||||||||||||| || || | |||||| || ||||||||||||| Sbjct: 958 tgatcccggcggtgacgttgaagtagctgaacgccgccgcccaccggcggttgtccttga 899 Query: 183 gcatgtgcacggcgacgctgtccggccgcaggttgtccatgtcccagctgaggtcgtaca 242 ||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||| Sbjct: 898 gcatgtgcacggcgacggtgtccggccggaagttgtccatgtcccagctgaggtcgtaca 839 Query: 243 tccgcggcttgaggtcgtacctgttcttccccttgccggcgaggttgagccacttgccga 302 ||||||||||||||||||| | ||| || |||||||||||||||||||| |||| Sbjct: 838 tccgcggcttgaggtcgtagcgattccggccgcgtccggcgaggttgagccacttcccga 779 Query: 303 gcatcaggtcctccggccccagcgtgtcgttccgcgccaggatctcctccgccgtcgaca 362 ||| |||||||| |||||| ||||||||| ||||| ||||||||||||||||| |||| Sbjct: 778 ccatgaggtcctcgggcccctccgtgtcgttgcgcgcgaggatctcctccgccgtggaca 719 Query: 363 cccagctcgccaggtcccaggacatgacgtaccccatgccgtgcatgaacagcatcgggt 422 |||| |||| | |||||| |||| ||||||||||||||||||||||||| ||||||| | Sbjct: 718 cccacgtcgcgacgtcccacgacacgacgtaccccatgccgtgcatgaacggcatcggct 659 Query: 423 cgccgctcatg 433 ||||| |||| Sbjct: 658 ggccgcccatg 648
>dbj|AK106115.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-E03, full insert sequence Length = 1198 Score = 200 bits (101), Expect = 3e-48 Identities = 278/337 (82%) Strand = Plus / Minus Query: 88 gatcgatcacggcaggtggtacagcttggacggcctgatcccggcggtgacgttgaagta 147 ||||||||| || | ||||||||| ||||||||| || ||||||||||||||||||||| Sbjct: 1068 gatcgatcatgggaagtggtacaggttggacggctggagcccggcggtgacgttgaagta 1009 Query: 148 ctggagcgtggtcgcccagcgtcggttgtccttgagcatgtgcacggcgacgctgtccgg 207 | || || | |||||| || |||||||||||||||||||||||| |||| ||||||| Sbjct: 1008 cctgaacgccgccgcccaccggcggttgtccttgagcatgtgcacgaggacggtgtccgg 949 Query: 208 ccgcaggttgtccatgtcccagctgaggtcgtacatccgcggcttgaggtcgtacctgtt 267 ||| | |||||||||||||||| |||||||||||||||||||| ||||| ||||| ||| Sbjct: 948 ccggaagttgtccatgtcccagttgaggtcgtacatccgcggcctgaggctgtaccggtt 889 Query: 268 cttccccttgccggcgaggttgagccacttgccgagcatcaggtcctccggccccagcgt 327 ||| ||| || | ||| ||||||||| || |||| | |||||||| || || |||| Sbjct: 888 cttgccccggcggccgatgttgagccatttcccgacgaggaggtcctcggggccgtgcgt 829 Query: 328 gtcgttccgcgccaggatctcctccgccgtcgacacccagctcgccaggtcccaggacat 387 |||||| | |||||| ||||| ||||||||||| |||| | ||||||||||| Sbjct: 828 gtcgttgtaccgcaggatgtcctcgttggtcgacacccacgtcgcgacgtcccaggacac 769 Query: 388 gacgtaccccatgccgtgcatgaacagcatcgggtcg 424 |||||| ||||| |||||||||||| ||||||||||| Sbjct: 768 gacgtagcccatcccgtgcatgaactgcatcgggtcg 732
>dbj|AK060938.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-C03, full insert sequence Length = 1155 Score = 200 bits (101), Expect = 3e-48 Identities = 278/337 (82%) Strand = Plus / Minus Query: 88 gatcgatcacggcaggtggtacagcttggacggcctgatcccggcggtgacgttgaagta 147 ||||||||| || | ||||||||| ||||||||| || ||||||||||||||||||||| Sbjct: 1068 gatcgatcatgggaagtggtacaggttggacggctggagcccggcggtgacgttgaagta 1009 Query: 148 ctggagcgtggtcgcccagcgtcggttgtccttgagcatgtgcacggcgacgctgtccgg 207 | || || | |||||| || |||||||||||||||||||||||| |||| ||||||| Sbjct: 1008 cctgaacgccgccgcccaccggcggttgtccttgagcatgtgcacgaggacggtgtccgg 949 Query: 208 ccgcaggttgtccatgtcccagctgaggtcgtacatccgcggcttgaggtcgtacctgtt 267 ||| | |||||||||||||||| |||||||||||||||||||| ||||| ||||| ||| Sbjct: 948 ccggaagttgtccatgtcccagttgaggtcgtacatccgcggcctgaggctgtaccggtt 889 Query: 268 cttccccttgccggcgaggttgagccacttgccgagcatcaggtcctccggccccagcgt 327 ||| ||| || | ||| ||||||||| || |||| | |||||||| || || |||| Sbjct: 888 cttgccccggcggccgatgttgagccatttcccgacgaggaggtcctcggggccgtgcgt 829 Query: 328 gtcgttccgcgccaggatctcctccgccgtcgacacccagctcgccaggtcccaggacat 387 |||||| | |||||| ||||| ||||||||||| |||| | ||||||||||| Sbjct: 828 gtcgttgtaccgcaggatgtcctcgttggtcgacacccacgtcgcgacgtcccaggacac 769 Query: 388 gacgtaccccatgccgtgcatgaacagcatcgggtcg 424 |||||| ||||| |||||||||||| ||||||||||| Sbjct: 768 gacgtagcccatcccgtgcatgaactgcatcgggtcg 732
>ref|XM_475865.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1074 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 238 gtacatccgcggcttgaggtcgtacctgttcttccccttgccggcgaggttgagccac 295 ||||||||||||| | |||||||| |||||| |||||| |||||||||||||||| Sbjct: 924 gtacatccgcggcgacatgtcgtaccggttcttggccttgctggcgaggttgagccac 867 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 175 gtccttgagcatgtgcacggcgacgctgtccgg 207 ||||||||||||||| ||||||| | ||||||| Sbjct: 1005 gtccttgagcatgtggacggcgatggtgtccgg 973
>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23, complete sequence Length = 191765 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 238 gtacatccgcggcttgaggtcgtacctgttcttccccttgccggcgaggttgagccac 295 ||||||||||||| | |||||||| |||||| |||||| |||||||||||||||| Sbjct: 112451 gtacatccgcggcgacatgtcgtaccggttcttggccttgctggcgaggttgagccac 112508 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 175 gtccttgagcatgtgcacggcgacgctgtccgg 207 ||||||||||||||| ||||||| | ||||||| Sbjct: 112370 gtccttgagcatgtggacggcgatggtgtccgg 112402
>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03, complete sequence Length = 177861 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 238 gtacatccgcggcttgaggtcgtacctgttcttccccttgccggcgaggttgagccac 295 ||||||||||||| | |||||||| |||||| |||||| |||||||||||||||| Sbjct: 168879 gtacatccgcggcgacatgtcgtaccggttcttggccttgctggcgaggttgagccac 168936 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 175 gtccttgagcatgtgcacggcgacgctgtccgg 207 ||||||||||||||| ||||||| | ||||||| Sbjct: 168798 gtccttgagcatgtggacggcgatggtgtccgg 168830
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 238 gtacatccgcggcttgaggtcgtacctgttcttccccttgccggcgaggttgagccac 295 ||||||||||||| | |||||||| |||||| |||||| |||||||||||||||| Sbjct: 27237483 gtacatccgcggcgacatgtcgtaccggttcttggccttgctggcgaggttgagccac 27237540 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 175 gtccttgagcatgtgcacggcgacgctgtccgg 207 ||||||||||||||| ||||||| | ||||||| Sbjct: 27237402 gtccttgagcatgtggacggcgatggtgtccgg 27237434
>dbj|AK064636.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-A06, full insert sequence Length = 1222 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 238 gtacatccgcggcttgaggtcgtacctgttcttccccttgccggcgaggttgagccac 295 ||||||||||||| | |||||||| |||||| |||||| |||||||||||||||| Sbjct: 941 gtacatccgcggcgacatgtcgtaccggttcttggccttgctggcgaggttgagccac 884 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 175 gtccttgagcatgtgcacggcgacgctgtccgg 207 ||||||||||||||| ||||||| | ||||||| Sbjct: 1022 gtccttgagcatgtggacggcgatggtgtccgg 990
>gb|AF391808.2| Zea mays chromosome 9S bz genomic region strain McC Length = 226001 Score = 46.1 bits (23), Expect = 0.096 Identities = 35/39 (89%) Strand = Plus / Plus Query: 374 aggtcccaggacatgacgtaccccatgccgtgcatgaac 412 ||||||||||||| || ||| ||||||||| |||||||| Sbjct: 128629 aggtcccaggacaggaggtagcccatgccgagcatgaac 128667
>gb|AF448416.1| Zea mays B73 chromosome 9S bz genomic region Length = 106186 Score = 46.1 bits (23), Expect = 0.096 Identities = 35/39 (89%) Strand = Plus / Plus Query: 374 aggtcccaggacatgacgtaccccatgccgtgcatgaac 412 ||||||||||||| || ||| ||||||||| |||||||| Sbjct: 71580 aggtcccaggacaggaggtagcccatgccgagcatgaac 71618
>gb|AY664416.1| Zea mays cultivar Mo17 locus bz, complete sequence Length = 203581 Score = 46.1 bits (23), Expect = 0.096 Identities = 35/39 (89%) Strand = Plus / Plus Query: 374 aggtcccaggacatgacgtaccccatgccgtgcatgaac 412 ||||||||||||| || ||| ||||||||| |||||||| Sbjct: 55610 aggtcccaggacaggaggtagcccatgccgagcatgaac 55648
>ref|XM_468154.1| Oryza sativa (japonica cultivar-group), mRNA Length = 924 Score = 44.1 bits (22), Expect = 0.38 Identities = 31/34 (91%) Strand = Plus / Minus Query: 370 cgccaggtcccaggacatgacgtaccccatgccg 403 ||||| |||||| |||| |||||||||||||||| Sbjct: 624 cgccacgtcccacgacacgacgtaccccatgccg 591 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 171 ggttgtccttgagcatgtgcacggcgac 198 |||||||||||||| |||| |||||||| Sbjct: 844 ggttgtccttgagcttgtggacggcgac 817
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 409 gaacagcatcgggtcgccgctc 430 |||||||||||||||||||||| Sbjct: 1988968 gaacagcatcgggtcgccgctc 1988989
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.38 Identities = 31/34 (91%) Strand = Plus / Plus Query: 370 cgccaggtcccaggacatgacgtaccccatgccg 403 ||||| |||||| |||| |||||||||||||||| Sbjct: 33365127 cgccacgtcccacgacacgacgtaccccatgccg 33365160 Score = 42.1 bits (21), Expect = 1.5 Identities = 39/45 (86%) Strand = Plus / Plus Query: 235 gtcgtacatccgcggcttgaggtcgtacctgttcttccccttgcc 279 ||||||||||||||||| | || ||||||||||||||||||| Sbjct: 33372855 gtcgtacatccgcggctcctcgccgaacctgttcttccccttgcc 33372899 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 171 ggttgtccttgagcatgtgcacggcgac 198 |||||||||||||| |||| |||||||| Sbjct: 33364907 ggttgtccttgagcttgtggacggcgac 33364934
>dbj|AP004095.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1715_H01 Length = 138733 Score = 44.1 bits (22), Expect = 0.38 Identities = 31/34 (91%) Strand = Plus / Plus Query: 370 cgccaggtcccaggacatgacgtaccccatgccg 403 ||||| |||||| |||| |||||||||||||||| Sbjct: 105877 cgccacgtcccacgacacgacgtaccccatgccg 105910 Score = 42.1 bits (21), Expect = 1.5 Identities = 39/45 (86%) Strand = Plus / Plus Query: 235 gtcgtacatccgcggcttgaggtcgtacctgttcttccccttgcc 279 ||||||||||||||||| | || ||||||||||||||||||| Sbjct: 113605 gtcgtacatccgcggctcctcgccgaacctgttcttccccttgcc 113649 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 171 ggttgtccttgagcatgtgcacggcgac 198 |||||||||||||| |||| |||||||| Sbjct: 105657 ggttgtccttgagcttgtggacggcgac 105684
>ref|XM_468155.1| Oryza sativa (japonica cultivar-group), mRNA Length = 942 Score = 42.1 bits (21), Expect = 1.5 Identities = 39/45 (86%) Strand = Plus / Minus Query: 235 gtcgtacatccgcggcttgaggtcgtacctgttcttccccttgcc 279 ||||||||||||||||| | || ||||||||||||||||||| Sbjct: 756 gtcgtacatccgcggctcctcgccgaacctgttcttccccttgcc 712
>gb|CP000057.1| Haemophilus influenzae strain 86-028NP, complete genome Length = 1913428 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 287 ttgagccacttgccgagcatc 307 ||||||||||||||||||||| Sbjct: 1173298 ttgagccacttgccgagcatc 1173278
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 338 gccaggatctcctccgccgtcgaca 362 ||||||||||| ||||||||||||| Sbjct: 755622 gccaggatctcttccgccgtcgaca 755646
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 334 ccgcgccaggatctcctccgc 354 ||||||||||||||||||||| Sbjct: 231608 ccgcgccaggatctcctccgc 231588
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 cctgttcttccccttgccggc 282 ||||||||||||||||||||| Sbjct: 1787326 cctgttcttccccttgccggc 1787346
>gb|AE004717.1| Pseudomonas aeruginosa PAO1, section 278 of 529 of the complete genome Length = 10459 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 409 gaacagcatcgggtcgccgct 429 ||||||||||||||||||||| Sbjct: 459 gaacagcatcgggtcgccgct 439
>dbj|AP004057.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1316_E06 Length = 110197 Score = 42.1 bits (21), Expect = 1.5 Identities = 39/45 (86%) Strand = Plus / Plus Query: 235 gtcgtacatccgcggcttgaggtcgtacctgttcttccccttgcc 279 ||||||||||||||||| | || ||||||||||||||||||| Sbjct: 3474 gtcgtacatccgcggctcctcgccgaacctgttcttccccttgcc 3518
>gb|U89688.1|ACU89688 Acanthamoeba castellanii myosin-I binding protein Acan125 mRNA, complete cds Length = 3613 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 210 gcaggttgtccatgtcccagc 230 ||||||||||||||||||||| Sbjct: 669 gcaggttgtccatgtcccagc 649
>ref|XM_521867.1| PREDICTED: Pan troglodytes similar to jerky homolog; jerky (mouse) homolog (LOC466468), mRNA Length = 729 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 ccaggatctcctccgccgtc 358 |||||||||||||||||||| Sbjct: 497 ccaggatctcctccgccgtc 478
>ref|XM_528246.1| PREDICTED: Pan troglodytes similar to jerky homolog; jerky (mouse) homolog (LOC472875), mRNA Length = 1707 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 ccaggatctcctccgccgtc 358 |||||||||||||||||||| Sbjct: 1439 ccaggatctcctccgccgtc 1420
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 gaacagcatcgggtcgccgc 428 |||||||||||||||||||| Sbjct: 2915315 gaacagcatcgggtcgccgc 2915334
>gb|BC071862.1| Homo sapiens cDNA clone IMAGE:4300160, partial cds Length = 2840 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 ccaggatctcctccgccgtc 358 |||||||||||||||||||| Sbjct: 1940 ccaggatctcctccgccgtc 1921
>gb|AY181252.1| Hosta virus X TGB1 (TGB1), TGB2 (TGB2), TGB3 (TGB3), and coat protein (CP) genes, complete cds Length = 2711 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 ttgacgaatacacggcgcac 66 |||||||||||||||||||| Sbjct: 1019 ttgacgaatacacggcgcac 1038
>gb|AC145123.2| Homo sapiens chromosome 8, clone XXfos-82949F4, complete sequence Length = 37635 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 ccaggatctcctccgccgtc 358 |||||||||||||||||||| Sbjct: 34817 ccaggatctcctccgccgtc 34836
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 407 atgaacagcatcgggtcgccgctc 430 ||||||| |||||||||||||||| Sbjct: 3700952 atgaacaccatcgggtcgccgctc 3700929
>emb|AJ620114.1| Hosta virus X Xgp1 gene, Xgp2 gene, Xgp3 gene, Xgp4 gene and Xgp5 gene, genomic RNA, type strain HVX-Kr Length = 6528 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 ttgacgaatacacggcgcac 66 |||||||||||||||||||| Sbjct: 4836 ttgacgaatacacggcgcac 4855
>emb|BX640755.1|HSM806834 Homo sapiens mRNA; cDNA DKFZp686C24207 (from clone DKFZp686C24207) Length = 2702 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 ccaggatctcctccgccgtc 358 |||||||||||||||||||| Sbjct: 1964 ccaggatctcctccgccgtc 1945
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 338 gccaggatctcctccgccgtcgac 361 ||||||||||||||||||| |||| Sbjct: 1928324 gccaggatctcctccgccgccgac 1928301
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 cgcgccaggatctcctccgc 354 |||||||||||||||||||| Sbjct: 979966 cgcgccaggatctcctccgc 979985
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 cgctgtccggccgcaggttg 217 |||||||||||||||||||| Sbjct: 284461 cgctgtccggccgcaggttg 284442
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 gaacagcatcgggtcgccgc 428 |||||||||||||||||||| Sbjct: 2624966 gaacagcatcgggtcgccgc 2624985
>gb|L42023.1| Haemophilus influenzae Rd KW20, complete genome Length = 1830138 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 ttgagccacttgccgagcat 306 |||||||||||||||||||| Sbjct: 1136022 ttgagccacttgccgagcat 1136003
>gb|AF072468.1|AF072468 Homo sapiens (JH8) mRNA, partial cds Length = 1719 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 ccaggatctcctccgccgtc 358 |||||||||||||||||||| Sbjct: 1020 ccaggatctcctccgccgtc 1001
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 tccgcgccaggatctcctcc 352 |||||||||||||||||||| Sbjct: 2139904 tccgcgccaggatctcctcc 2139923
>dbj|AB209002.1| Homo sapiens mRNA for jerky homolog variant protein Length = 7187 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 ccaggatctcctccgccgtc 358 |||||||||||||||||||| Sbjct: 971 ccaggatctcctccgccgtc 952 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,196,143 Number of Sequences: 3902068 Number of extensions: 2196143 Number of successful extensions: 39804 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 39042 Number of HSP's gapped (non-prelim): 747 length of query: 439 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 417 effective length of database: 17,147,199,772 effective search space: 7150382304924 effective search space used: 7150382304924 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
