Clone Information

BLAST Search Result

Clone Name	rbart57c04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RS4_MAIZE (O22424) 40S ribosomal protein S4	128	4e-30
2	RS4_PRUAR (O81363) 40S ribosomal protein S4	121	4e-28
3	RS4_SOLTU (P46300) 40S ribosomal protein S4	121	4e-28
4	RS4_ARATH (P49204) 40S ribosomal protein S4	120	6e-28
5	RS4_GOSHI (P46299) 40S ribosomal protein S4	120	8e-28
6	RS4Y1_MONDO (O62739) 40S ribosomal protein S4, Y isoform 1	99	3e-21
7	RS4X_MONDO (O62738) 40S ribosomal protein S4, X isoform	99	3e-21
8	RS4_XENTR (Q6PBC4) 40S ribosomal protein S4	97	7e-21
9	RS4_XENLA (P49401) 40S ribosomal protein S4	97	7e-21
10	RS4_CRIGR (P47961) 40S ribosomal protein S4	97	7e-21
11	RS4_CHICK (P47836) 40S ribosomal protein S4	97	7e-21
12	RS4X_RAT (P62703) 40S ribosomal protein S4, X isoform	97	7e-21
13	RS4X_MOUSE (P62702) 40S ribosomal protein S4, X isoform	97	7e-21
14	RS4X_MESAU (P62704) 40S ribosomal protein S4, X isoform	97	7e-21
15	RS4X_MACFU (Q76MY1) 40S ribosomal protein S4, X isoform	97	7e-21
16	RS4X_HUMAN (P62701) 40S ribosomal protein S4, X isoform (Single ...	97	7e-21
17	RS4X_FELCA (P62705) 40S ribosomal protein S4, X isoform	97	7e-21
18	RS4X_CERAE (Q76N24) 40S ribosomal protein S4, X isoform	97	7e-21
19	RS4X_BRARE (Q642H9) 40S ribosomal protein S4, X isoform	96	2e-20
20	RS4Y1_HUMAN (P22090) 40S ribosomal protein S4, Y isoform 1	96	3e-20
21	RS4_DROME (P41042) 40S ribosomal protein S4	95	4e-20
22	RS4Y1_PONPY (Q861U7) 40S ribosomal protein S4, Y isoform 1	95	4e-20
23	RS4Y1_MACFU (P79183) 40S ribosomal protein S4, Y isoform 1	95	4e-20
24	RS4Y1_GORGO (Q861U8) 40S ribosomal protein S4, Y isoform 1	95	5e-20
25	RS4Y1_PANTR (Q861U9) 40S ribosomal protein S4, Y isoform 1	93	1e-19
26	RS4Y1_PANPA (Q861V0) 40S ribosomal protein S4, Y isoform 1	93	1e-19
27	RS4_ICTPU (Q90YS0) 40S ribosomal protein S4	92	2e-19
28	RS4Y2_HUMAN (Q8TD47) 40S ribosomal protein S4, Y isoform 2	92	3e-19
29	RS4_ORYSA (P49398) 40S ribosomal protein S4 (SCAR protein SS620)	92	3e-19
30	RS4Y2_PANTR (Q6GVM7) 40S ribosomal protein S4, Y isoform 2	92	4e-19
31	RS4B_SCHPO (Q9USW5) 40S ribosomal protein S4-B	84	8e-17
32	RS4C_SCHPO (Q9P4W9) 40S ribosomal protein S4-C	83	1e-16
33	RS4A_SCHPO (P87158) 40S ribosomal protein S4-A	83	1e-16
34	RS4_YARLI (O59950) 40S ribosomal protein S4 (S7)	80	1e-15
35	RS4_CANAL (P47837) 40S ribosomal protein S4 (S7)	78	6e-15
36	RS4_DICDI (P51405) 40S ribosomal protein S4	77	8e-15
37	RS4_CAEEL (Q9N3X2) 40S ribosomal protein S4	77	1e-14
38	RS4_YEAST (P05753) 40S ribosomal protein S4 (S7) (YS6) (RP5)	77	1e-14
39	RS4E_AERPE (Q9YF85) 30S ribosomal protein S4e	42	4e-04
40	RS4_HORSE (P55832) 40S ribosomal protein S4 (Fragment)	37	0.015
41	RS4_BOVIN (P79103) 40S ribosomal protein S4 (Fragment)	37	0.015
42	FOSB_BACLD (Q65KJ5) Metallothiol transferase fosB (EC 2.5.1.-) (...	35	0.057
43	LEU1_SOYBN (Q39891) Probable 2-isopropylmalate synthase (EC 2.3....	31	0.83
44	Y977_HAEDU (Q7VMJ8) UPF0078 membrane protein HD_0977	30	1.1
45	Y098_SYNY3 (Q55880) Hypothetical UPF0063 protein sll0098	30	1.4
46	YCGV_ECO57 (Q8X583) Hypothetical protein ycgV	29	3.1
47	RS4E_PYRKO (Q5JJG0) 30S ribosomal protein S4e	28	4.1
48	TRPG_CRYNE (Q5KC22) Anthranilate synthase component 2 (EC 4.1.3....	28	5.4
49	TRPG_CRYNV (P27710) Anthranilate synthase component 2 (EC 4.1.3....	28	7.0
50	COHA1_CANFA (Q9N281) Collagen alpha-1(XVII) chain (Bullous pemph...	28	7.0
51	RS4E_PYRHO (O59430) 30S ribosomal protein S4e	27	9.1

>RS4_MAIZE (O22424) 40S ribosomal protein S4|
          Length = 265

 Score =  128 bits (321), Expect = 4e-30
 Identities = 61/68 (89%), Positives = 64/68 (94%)
 Frame = -1

Query: 385 TGRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPI 206
           TGRVGVIKNREKHKG+FETI VED+ GHQFATR+GNVFTIGKG KPWVSLPKGKGIKL I
Sbjct: 189 TGRVGVIKNREKHKGSFETIHVEDSLGHQFATRMGNVFTIGKGNKPWVSLPKGKGIKLSI 248

Query: 205 IEEQRKRD 182
           IEEQRKRD
Sbjct: 249 IEEQRKRD 256

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>RS4_PRUAR (O81363) 40S ribosomal protein S4|
          Length = 261

 Score =  121 bits (304), Expect = 4e-28
 Identities = 57/66 (86%), Positives = 62/66 (93%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GRVGVIKNREKHKG+FETI V+DA GH+FATRLGNVFTIGKGTKPWVSLPKGKGIKL I+
Sbjct: 186 GRVGVIKNREKHKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIL 245

Query: 202 EEQRKR 185
           EE +KR
Sbjct: 246 EEAKKR 251

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>RS4_SOLTU (P46300) 40S ribosomal protein S4|
          Length = 264

 Score =  121 bits (304), Expect = 4e-28
 Identities = 55/66 (83%), Positives = 63/66 (95%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GRVGVIKNREKHKG+FET+ ++D+QGH+FATRLGNVFT+GKGTKPWVSLPKGKGIKL II
Sbjct: 190 GRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPKGKGIKLTII 249

Query: 202 EEQRKR 185
           E+ RKR
Sbjct: 250 EDARKR 255

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>RS4_ARATH (P49204) 40S ribosomal protein S4|
          Length = 262

 Score =  120 bits (302), Expect = 6e-28
 Identities = 56/66 (84%), Positives = 62/66 (93%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GRVGVIKNREKHKG+FETI ++D+ GH+FATRLGNV+TIGKGTKPWVSLPKGKGIKL II
Sbjct: 190 GRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTII 249

Query: 202 EEQRKR 185
           EE RKR
Sbjct: 250 EEARKR 255

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>RS4_GOSHI (P46299) 40S ribosomal protein S4|
          Length = 262

 Score =  120 bits (301), Expect = 8e-28
 Identities = 58/66 (87%), Positives = 61/66 (92%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GRVGVIKNREKHKG+FETI V+DA GH+FATRLGNVFTIGKGTKPWVSLPK KGIKL II
Sbjct: 190 GRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPKRKGIKLSII 249

Query: 202 EEQRKR 185
           EE RKR
Sbjct: 250 EEARKR 255

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>RS4Y1_MONDO (O62739) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 98.6 bits (244), Expect = 3e-21
 Identities = 43/66 (65%), Positives = 54/66 (81%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GR+GVI NREKH G+F+ + V+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L I 
Sbjct: 189 GRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIA 248

Query: 202 EEQRKR 185
           EE+ KR
Sbjct: 249 EERDKR 254

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>RS4X_MONDO (O62738) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 98.6 bits (244), Expect = 3e-21
 Identities = 43/66 (65%), Positives = 54/66 (81%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GR+GVI NREKH G+F+ + V+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L I 
Sbjct: 189 GRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIA 248

Query: 202 EEQRKR 185
           EE+ KR
Sbjct: 249 EERDKR 254

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>RS4_XENTR (Q6PBC4) 40S ribosomal protein S4|
          Length = 262

 Score = 97.4 bits (241), Expect = 7e-21
 Identities = 42/66 (63%), Positives = 54/66 (81%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GR+GVI NRE+H G+F+ + V+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L I 
Sbjct: 189 GRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIA 248

Query: 202 EEQRKR 185
           EE+ KR
Sbjct: 249 EERDKR 254

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>RS4_XENLA (P49401) 40S ribosomal protein S4|
          Length = 262

 Score = 97.4 bits (241), Expect = 7e-21
 Identities = 42/66 (63%), Positives = 54/66 (81%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GR+GVI NRE+H G+F+ + V+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L I 
Sbjct: 189 GRIGVITNRERHPGSFDVVHVKDANGNNFATRLSNIFVIGKGNKPWISLPRGKGIRLTIA 248

Query: 202 EEQRKR 185
           EE+ KR
Sbjct: 249 EERDKR 254

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>RS4_CRIGR (P47961) 40S ribosomal protein S4|
          Length = 262

 Score = 97.4 bits (241), Expect = 7e-21
 Identities = 42/66 (63%), Positives = 54/66 (81%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GR+GVI NRE+H G+F+ + V+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L I 
Sbjct: 189 GRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIA 248

Query: 202 EEQRKR 185
           EE+ KR
Sbjct: 249 EERDKR 254

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>RS4_CHICK (P47836) 40S ribosomal protein S4|
          Length = 262

 Score = 97.4 bits (241), Expect = 7e-21
 Identities = 42/66 (63%), Positives = 54/66 (81%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GR+GVI NRE+H G+F+ + V+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L I 
Sbjct: 189 GRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIA 248

Query: 202 EEQRKR 185
           EE+ KR
Sbjct: 249 EERDKR 254

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>RS4X_RAT (P62703) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 97.4 bits (241), Expect = 7e-21
 Identities = 42/66 (63%), Positives = 54/66 (81%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GR+GVI NRE+H G+F+ + V+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L I 
Sbjct: 189 GRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIA 248

Query: 202 EEQRKR 185
           EE+ KR
Sbjct: 249 EERDKR 254

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>RS4X_MOUSE (P62702) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 97.4 bits (241), Expect = 7e-21
 Identities = 42/66 (63%), Positives = 54/66 (81%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GR+GVI NRE+H G+F+ + V+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L I 
Sbjct: 189 GRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIA 248

Query: 202 EEQRKR 185
           EE+ KR
Sbjct: 249 EERDKR 254

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>RS4X_MESAU (P62704) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 97.4 bits (241), Expect = 7e-21
 Identities = 42/66 (63%), Positives = 54/66 (81%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GR+GVI NRE+H G+F+ + V+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L I 
Sbjct: 189 GRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIA 248

Query: 202 EEQRKR 185
           EE+ KR
Sbjct: 249 EERDKR 254

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>RS4X_MACFU (Q76MY1) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 97.4 bits (241), Expect = 7e-21
 Identities = 42/66 (63%), Positives = 54/66 (81%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GR+GVI NRE+H G+F+ + V+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L I 
Sbjct: 189 GRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIA 248

Query: 202 EEQRKR 185
           EE+ KR
Sbjct: 249 EERDKR 254

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>RS4X_HUMAN (P62701) 40S ribosomal protein S4, X isoform (Single copy abundant|
           mRNA protein) (SCR10)
          Length = 262

 Score = 97.4 bits (241), Expect = 7e-21
 Identities = 42/66 (63%), Positives = 54/66 (81%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GR+GVI NRE+H G+F+ + V+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L I 
Sbjct: 189 GRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIA 248

Query: 202 EEQRKR 185
           EE+ KR
Sbjct: 249 EERDKR 254

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>RS4X_FELCA (P62705) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 97.4 bits (241), Expect = 7e-21
 Identities = 42/66 (63%), Positives = 54/66 (81%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GR+GVI NRE+H G+F+ + V+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L I 
Sbjct: 189 GRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIA 248

Query: 202 EEQRKR 185
           EE+ KR
Sbjct: 249 EERDKR 254

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>RS4X_CERAE (Q76N24) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 97.4 bits (241), Expect = 7e-21
 Identities = 42/66 (63%), Positives = 54/66 (81%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GR+GVI NRE+H G+F+ + V+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+L I 
Sbjct: 189 GRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIA 248

Query: 202 EEQRKR 185
           EE+ KR
Sbjct: 249 EERDKR 254

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>RS4X_BRARE (Q642H9) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 96.3 bits (238), Expect = 2e-20
 Identities = 42/66 (63%), Positives = 54/66 (81%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GR+GVI NREKH G+F+ + V+D+ G+ FATRL N+F IGKG KPWVSLP+GKG++L I 
Sbjct: 189 GRIGVITNREKHPGSFDVVHVKDSIGNSFATRLSNIFVIGKGNKPWVSLPRGKGVRLTIA 248

Query: 202 EEQRKR 185
           EE+ KR
Sbjct: 249 EERDKR 254

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>RS4Y1_HUMAN (P22090) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 95.5 bits (236), Expect = 3e-20
 Identities = 41/66 (62%), Positives = 53/66 (80%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GRVGVI NRE+H G+F+ + V+DA G+ FATRL N+F IG G KPW+SLP+GKGI+L + 
Sbjct: 189 GRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVA 248

Query: 202 EEQRKR 185
           EE+ KR
Sbjct: 249 EERDKR 254

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>RS4_DROME (P41042) 40S ribosomal protein S4|
          Length = 261

 Score = 95.1 bits (235), Expect = 4e-20
 Identities = 42/66 (63%), Positives = 54/66 (81%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GRVG + NRE+H G+F+ + ++D+QGH FATRL NVF IGKG KP++SLPKGKG+KL I 
Sbjct: 190 GRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIA 249

Query: 202 EEQRKR 185
           EE+ KR
Sbjct: 250 EERDKR 255

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>RS4Y1_PONPY (Q861U7) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 95.1 bits (235), Expect = 4e-20
 Identities = 41/66 (62%), Positives = 53/66 (80%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GRVGVI NRE+H G+F+ + V+DA G+ FATR+ N+F IG G KPW+SLP+GKGI+L I 
Sbjct: 189 GRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIA 248

Query: 202 EEQRKR 185
           EE+ KR
Sbjct: 249 EERDKR 254

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>RS4Y1_MACFU (P79183) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 95.1 bits (235), Expect = 4e-20
 Identities = 41/66 (62%), Positives = 53/66 (80%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GRVGVI NRE+H G+F+ + V+DA G+ FATR+ N+F IG G KPW+SLP+GKGI+L I 
Sbjct: 189 GRVGVITNRERHPGSFDVVHVKDASGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIA 248

Query: 202 EEQRKR 185
           EE+ KR
Sbjct: 249 EERDKR 254

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>RS4Y1_GORGO (Q861U8) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 94.7 bits (234), Expect = 5e-20
 Identities = 40/66 (60%), Positives = 53/66 (80%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GRVGVI NRE+H G+F+ + V+DA G+ FATR+ N+F IG G KPW+SLP+GKGI+L + 
Sbjct: 189 GRVGVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTVA 248

Query: 202 EEQRKR 185
           EE+ KR
Sbjct: 249 EERDKR 254

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>RS4Y1_PANTR (Q861U9) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 93.2 bits (230), Expect = 1e-19
 Identities = 40/66 (60%), Positives = 52/66 (78%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GRVGVI NRE+H G+F+ + V+DA G+ FATRL N+F IG G KPW+SLP+GKGI+L + 
Sbjct: 189 GRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVA 248

Query: 202 EEQRKR 185
            E+ KR
Sbjct: 249 AERDKR 254

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>RS4Y1_PANPA (Q861V0) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 93.2 bits (230), Expect = 1e-19
 Identities = 40/66 (60%), Positives = 52/66 (78%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GRVGVI NRE+H G+F+ + V+DA G+ FATRL N+F IG G KPW+SLP+GKGI+L + 
Sbjct: 189 GRVGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVA 248

Query: 202 EEQRKR 185
            E+ KR
Sbjct: 249 AERDKR 254

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>RS4_ICTPU (Q90YS0) 40S ribosomal protein S4|
          Length = 262

 Score = 92.4 bits (228), Expect = 2e-19
 Identities = 40/66 (60%), Positives = 53/66 (80%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GR+GVI NRE+H G+F+ + V+D+ G+ FATRL N+F IGKG K WVS+P+GKGI+L I 
Sbjct: 189 GRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKAWVSIPRGKGIRLTIA 248

Query: 202 EEQRKR 185
           EE+ KR
Sbjct: 249 EERDKR 254

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>RS4Y2_HUMAN (Q8TD47) 40S ribosomal protein S4, Y isoform 2|
          Length = 262

 Score = 92.0 bits (227), Expect = 3e-19
 Identities = 40/66 (60%), Positives = 52/66 (78%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GRVGVI NRE+H G+ + + V+DA G+ FATR+ N+F IG G KPW+SLP+GKGI+L I 
Sbjct: 189 GRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIA 248

Query: 202 EEQRKR 185
           EE+ KR
Sbjct: 249 EERDKR 254

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>RS4_ORYSA (P49398) 40S ribosomal protein S4 (SCAR protein SS620)|
          Length = 268

 Score = 92.0 bits (227), Expect = 3e-19
 Identities = 44/49 (89%), Positives = 45/49 (91%)
 Frame = -1

Query: 346 KGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPIIE 200
           KG+FETI VEDA GHQFATRLGNVFTIGKG KPWVSLPKGKGIKL IIE
Sbjct: 205 KGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIE 253



 Score = 28.5 bits (62), Expect = 4.1
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = -3

Query: 380 ACWCDQEQGEA*GNL*DHPR*GCPGSPVCHPFGQRVHHWQGHQALGEPPQGQGYQAPHH* 201
           A WCDQ+QGEA G+          G       G      +G++     P+G+G +     
Sbjct: 194 AVWCDQQQGEAKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIE 253

Query: 200 GAEEEG 183
           GA+E G
Sbjct: 254 GAKEAG 259

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>RS4Y2_PANTR (Q6GVM7) 40S ribosomal protein S4, Y isoform 2|
          Length = 262

 Score = 91.7 bits (226), Expect = 4e-19
 Identities = 39/66 (59%), Positives = 52/66 (78%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GRVGV+ NRE+H G+ + + V+DA G+ FATR+ N+F IG G KPW+SLP+GKGI+L I 
Sbjct: 189 GRVGVVTNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIA 248

Query: 202 EEQRKR 185
           EE+ KR
Sbjct: 249 EERDKR 254

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>RS4B_SCHPO (Q9USW5) 40S ribosomal protein S4-B|
          Length = 262

 Score = 84.0 bits (206), Expect = 8e-17
 Identities = 40/66 (60%), Positives = 49/66 (74%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GRVG I +RE H G+FE I V+DA   +FATRL NVF IG+  K W+SLPKGKG+KL I 
Sbjct: 190 GRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSIT 249

Query: 202 EEQRKR 185
           EE+ +R
Sbjct: 250 EERDRR 255

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>RS4C_SCHPO (Q9P4W9) 40S ribosomal protein S4-C|
          Length = 262

 Score = 83.2 bits (204), Expect = 1e-16
 Identities = 40/66 (60%), Positives = 49/66 (74%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GRVG I +RE H G+FE I V+DA   +FATRL NVF IG+  K W+SLPKGKG+KL I 
Sbjct: 190 GRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSIT 249

Query: 202 EEQRKR 185
           EE+ +R
Sbjct: 250 EERDRR 255

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>RS4A_SCHPO (P87158) 40S ribosomal protein S4-A|
          Length = 262

 Score = 83.2 bits (204), Expect = 1e-16
 Identities = 40/66 (60%), Positives = 49/66 (74%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GRVG I +RE H G+FE I V+DA   +FATRL NVF IG+  K W+SLPKGKG+KL I 
Sbjct: 190 GRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSIT 249

Query: 202 EEQRKR 185
           EE+ +R
Sbjct: 250 EERDRR 255

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>RS4_YARLI (O59950) 40S ribosomal protein S4 (S7)|
          Length = 260

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 38/66 (57%), Positives = 49/66 (74%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GRVG I +RE+H+G F+ + ++DA  +QF TRL NVF IG+G K  +SLPKGKGIKL I 
Sbjct: 190 GRVGTITHRERHEGGFDIVHIKDALDNQFVTRLTNVFVIGEGNKSLISLPKGKGIKLSIA 249

Query: 202 EEQRKR 185
           EE+  R
Sbjct: 250 EERDAR 255

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>RS4_CANAL (P47837) 40S ribosomal protein S4 (S7)|
          Length = 262

 Score = 77.8 bits (190), Expect = 6e-15
 Identities = 40/67 (59%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIG-KGTKPWVSLPKGKGIKLPI 206
           GRVGVI +REK +G F+ + ++DA  + F TRL NVF IG +  KPWVSLPKGKGIKL I
Sbjct: 190 GRVGVIVHREKLEGGFDLVHIKDALENTFVTRLSNVFVIGTEAGKPWVSLPKGKGIKLSI 249

Query: 205 IEEQRKR 185
            EE+ +R
Sbjct: 250 SEERDRR 256

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>RS4_DICDI (P51405) 40S ribosomal protein S4|
          Length = 266

 Score = 77.4 bits (189), Expect = 8e-15
 Identities = 34/63 (53%), Positives = 47/63 (74%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GRVG + +REKH G+F+ + V D  GHQFATRL NVF IGK ++ +VSLP GKG++   +
Sbjct: 189 GRVGAVTHREKHPGSFDIVHVTDTAGHQFATRLSNVFIIGKASQTFVSLPAGKGVRRSRV 248

Query: 202 EEQ 194
           +E+
Sbjct: 249 DER 251

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>RS4_CAEEL (Q9N3X2) 40S ribosomal protein S4|
          Length = 259

 Score = 76.6 bits (187), Expect = 1e-14
 Identities = 37/66 (56%), Positives = 47/66 (71%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GRVG+I +RE+  G  + I ++D+ GH FATR+ NVF IGKG K  VSLP G GI+L I 
Sbjct: 189 GRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAGIRLSIA 248

Query: 202 EEQRKR 185
           EE+ KR
Sbjct: 249 EERDKR 254

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>RS4_YEAST (P05753) 40S ribosomal protein S4 (S7) (YS6) (RP5)|
          Length = 260

 Score = 76.6 bits (187), Expect = 1e-14
 Identities = 34/66 (51%), Positives = 49/66 (74%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLPII 203
           GR+G I ++E+H G F+ + ++D+  + F TRL NVF IG+  KP++SLPKGKGIKL I 
Sbjct: 189 GRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPKGKGIKLSIA 248

Query: 202 EEQRKR 185
           EE+ +R
Sbjct: 249 EERDRR 254

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>RS4E_AERPE (Q9YF85) 30S ribosomal protein S4e|
          Length = 253

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFET-IPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKG 227
           GRVGV+K+ +K  G   T + +EDA G+ F T L  VF IG   +P +SLP+G
Sbjct: 199 GRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIGL-DRPVISLPEG 250

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>RS4_HORSE (P55832) 40S ribosomal protein S4 (Fragment)|
          Length = 194

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDA 311
           GR+GVI NRE+H G+F+ + V+DA
Sbjct: 171 GRIGVITNRERHPGSFDVVHVKDA 194

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>RS4_BOVIN (P79103) 40S ribosomal protein S4 (Fragment)|
          Length = 194

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = -1

Query: 382 GRVGVIKNREKHKGTFETIPVEDA 311
           GR+GVI NRE+H G+F+ + V+DA
Sbjct: 171 GRIGVITNRERHPGSFDVVHVKDA 194

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>FOSB_BACLD (Q65KJ5) Metallothiol transferase fosB (EC 2.5.1.-) (Fosfomycin|
           resistance protein)
          Length = 154

 Score = 34.7 bits (78), Expect = 0.057
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = -1

Query: 376 VGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVF---TIGKGTKPWVSLPKG 227
           V V+K R++H+G  ++I   D  GH+F    G+VF      +  KP +S  +G
Sbjct: 92  VNVLKGRKRHEGDRDSIYFSDPDGHKFELHTGSVFDRLQYYQNEKPHLSFHEG 144

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>LEU1_SOYBN (Q39891) Probable 2-isopropylmalate synthase (EC 2.3.3.13)|
           (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase)
           (Late nodulin 56) (N-56)
          Length = 565

 Score = 30.8 bits (68), Expect = 0.83
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = -1

Query: 352 KHKGTFETIPVEDAQGHQFATRLGNV 275
           KHKGT+ETI  E+  GH+  TR+G V
Sbjct: 345 KHKGTYETISPEEI-GHKRTTRIGIV 369

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>Y977_HAEDU (Q7VMJ8) UPF0078 membrane protein HD_0977|
          Length = 199

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
 Frame = +2

Query: 266 NGEH------VAQTGGKLVTLGILNGDGLKGSLMLL 355
           NG H      V + GGKL  +G+L  D LKGSL +L
Sbjct: 36  NGSHNPGATNVLRNGGKLAAIGVLLFDTLKGSLPVL 71

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>Y098_SYNY3 (Q55880) Hypothetical UPF0063 protein sll0098|
          Length = 350

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 17/52 (32%), Positives = 31/52 (59%)
 Frame = -1

Query: 385 TGRVGVIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLPK 230
           TG+ G I+N E H+   + + V++    +F  R+ NV  +G G +P ++LP+
Sbjct: 122 TGKGGFIRNLESHEIVDQVLTVQE----EFHERVSNVVFMGMG-EPLLNLPQ 168

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>YCGV_ECO57 (Q8X583) Hypothetical protein ycgV|
          Length = 547

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 343 GTFETIPVEDAQGHQFATRLGNVFTIGKGTKPW 245
           GTF T+ VE+  G+       +V   G G KPW
Sbjct: 514 GTFTTLNVENLSGNSTFIMRADVVGEGNGVKPW 546

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>RS4E_PYRKO (Q5JJG0) 30S ribosomal protein S4e|
          Length = 243

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 370 VIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLP 233
           +++ R+   G  + + +ED  G  F T     F IGK  KP +SLP
Sbjct: 199 IVEVRQFPMGWPDVVTIEDENGELFDTLKEYAFVIGK-DKPEISLP 243

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>TRPG_CRYNE (Q5KC22) Anthranilate synthase component 2 (EC 4.1.3.27)|
           (Anthranilate synthase component II) [Includes:
           Glutamine amidotransferase; Indole-3-glycerol phosphate
           synthase (EC 4.1.1.48) (IGPS);
           N-(5'-phosphoribosyl)anthranilate isomerase (EC 5.3
          Length = 752

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
 Frame = +2

Query: 203 NDGELDTLAL--GEAHPRLGALANGEHVAQTGGKLVTLGILNG-----DGLKGSLMLLPV 361
           +DGEL+ + +  G  HPR  +  + + +A   GKL  LG+  G     D L G +     
Sbjct: 46  SDGELERIVISPGPGHPRTDSGVSRDVIAWGMGKLPILGVCMGLECIVDLLGGEIAYAGE 105

Query: 362 LDHTNT 379
           + H  T
Sbjct: 106 IKHGKT 111

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>TRPG_CRYNV (P27710) Anthranilate synthase component 2 (EC 4.1.3.27)|
           (Anthranilate synthase component II) [Includes:
           Glutamine amidotransferase; Indole-3-glycerol phosphate
           synthase (EC 4.1.1.48) (IGPS);
           N-(5'-phosphoribosyl)anthranilate isomerase (EC 5.3
          Length = 752

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
 Frame = +2

Query: 206 DGELDTLAL--GEAHPRLGALANGEHVAQTGGKLVTLGILNG-----DGLKGSLMLLPVL 364
           DGEL+ + +  G  HPR  +  + + +A   GKL  LG+  G     D L G +     +
Sbjct: 47  DGELERIVISPGPGHPRTDSGVSRDVIAWGMGKLPILGVCMGLECIVDLLGGEIAYAGEI 106

Query: 365 DHTNT 379
            H  T
Sbjct: 107 KHGKT 111

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>COHA1_CANFA (Q9N281) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen|
           2) (180 kDa bullous pemphigoid antigen 2) (Fragment)
          Length = 709

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 229 PWGGSPKAWCPC 264
           PWG +P AWCPC
Sbjct: 449 PWGAAP-AWCPC 459

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>RS4E_PYRHO (O59430) 30S ribosomal protein S4e|
          Length = 243

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 370 VIKNREKHKGTFETIPVEDAQGHQFATRLGNVFTIGKGTKPWVSLP 233
           +++ ++   G  + + +ED +G  F T     F +GK  KP +SLP
Sbjct: 199 IVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGK-DKPKISLP 243


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,366,015
Number of Sequences: 219361
Number of extensions: 1352358
Number of successful extensions: 3778
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 3618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3774
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result