>POLG_RHDVF (P27410) Genome polyprotein (p254) [Contains: p16; p23; Helicase|
            (2C-like protein) (P2C); 3A-like protein; Viral
            genome-linked protein (VPg); Thiol protease P3C (EC
            3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48);
            Capsid protein VP60, sub
          Length = 2344

 Score = 32.7 bits (73), Expect = 0.54
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 399  TSRQMMPEEEQTAVAARSGVRRMIGRVR 316
            T RQ+ PEE+Q  +  RSGVR  + R R
Sbjct: 1059 TRRQLRPEEDQVTIVGRSGVRNEVIRTR 1086

>Y1873_AERPE (Q9YAS0) UPF0219 protein APE1873|
          Length = 365

 Score = 26.2 bits (56), Expect(2) = 0.83
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 490 ARARVEPAELPAIGSGVHARRHQRAPAAT 404
           ARARV+PA + A+  G  ++ +   P+AT
Sbjct: 79  ARARVDPASIGAVFFGSESKPYAVKPSAT 107



 Score = 24.6 bits (52), Expect(2) = 0.83
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 387 MMPEEEQTAVAARSGVRRMIGRVRSGTAGY 298
           M  + E    AA  G+R  IG V SG  GY
Sbjct: 120 MASDLEFACRAASEGMRASIGLVASGVVGY 149

>POLG_RHDV3 (P27411) Genome polyprotein (p254) [Contains: p16; p23; Helicase|
            (2C-like protein) (P2C); 3A-like protein; Viral
            genome-linked protein (VPg); Thiol protease P3C (EC
            3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48);
            Capsid protein VP60, sub
          Length = 2344

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 399  TSRQMMPEEEQTAVAARSGVRRMIGRVR 316
            T RQ+ P+E+Q  +  RSGVR  + R R
Sbjct: 1059 TRRQLRPDEDQVTIVGRSGVRNEVIRTR 1086

>POLG_RHDVA (Q86119) Genome polyprotein (p254) [Contains: p16; p23; Helicase|
            (2C-like protein) (P2C); 3A-like protein; Viral
            genome-linked protein (VPg); Thiol protease P3C (EC
            3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48);
            Capsid protein VP60, sub
          Length = 2344

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 399  TSRQMMPEEEQTAVAARSGVRRMIGRVR 316
            T RQ+ P+E+Q  V  R GVR  + R R
Sbjct: 1059 TRRQLRPDEDQVTVVGRGGVRNEVIRTR 1086

>RLA1_ALTAL (P49148) 60S acidic ribosomal protein P1 (Allergen Alt a 12) (Alt a|
           XII)
          Length = 110

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 246 ATPAMRAMLLRSRVARGATSAEQGQQQQPMAAEEDAG 136
           A P   A+LLR R A  A +AE+ ++++   ++ED G
Sbjct: 69  AAPLPEALLLRWRAADAAPAAEEKKEEEKEESDEDMG 105

>POLG_RHDVS (Q86117) Genome polyprotein (p254) [Contains: p16; p23; Helicase|
            (2C-like protein) (P2C); 3A-like protein; Viral
            genome-linked protein (VPg); Thiol protease P3C (EC
            3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48);
            Capsid protein VP60, sub
          Length = 2344

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 399  TSRQMMPEEEQTAVAARSGVRRMIGRVR 316
            T RQ+ P+E+Q  +  R GVR  + R R
Sbjct: 1059 TRRQLRPDEDQVTIVGRGGVRNEVIRTR 1086

>POLG_RHDVB (Q89273) Genome polyprotein (p254) [Contains: p16; p23; Helicase|
            (2C-like protein) (P2C); 3A-like protein; Viral
            genome-linked protein (VPg); Thiol protease P3C (EC
            3.4.22.-); RNA-directed RNA polymerase (EC 2.7.7.48);
            Capsid protein VP60, sub
          Length = 2344

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 399  TSRQMMPEEEQTAVAARSGVRRMIGRVR 316
            T RQ+ P+E+Q  +  R GVR  + R R
Sbjct: 1059 TRRQLRPDEDQVTIVGRGGVRNEVIRTR 1086


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,569,141
Number of Sequences: 219361
Number of extensions: 599983
Number of successful extensions: 1959
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1959
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)