ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart57c03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_196911.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0071K18.16), mRNA Length = 1941 Score = 48.1 bits (24), Expect = 0.028 Identities = 51/60 (85%) Strand = Plus / Minus Query: 385 catctgcctcgaggtggcgcgttgctgctggtgcgcgctgatgccggcgagcatgtacgc 444 |||||||||||| |||||||| |||||| ||||| ||| | |||||||||| |||||| Sbjct: 1740 catctgcctcgacgtggcgcgctgctgcgcgtgcgagctcagcccggcgagcacgtacgc 1681
>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence, complete sequence Length = 149758 Score = 48.1 bits (24), Expect = 0.028 Identities = 51/60 (85%) Strand = Plus / Minus Query: 385 catctgcctcgaggtggcgcgttgctgctggtgcgcgctgatgccggcgagcatgtacgc 444 |||||||||||| |||||||| |||||| ||||| ||| | |||||||||| |||||| Sbjct: 18704 catctgcctcgacgtggcgcgctgctgcgcgtgcgagctcagcccggcgagcacgtacgc 18645
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 48.1 bits (24), Expect = 0.028 Identities = 51/60 (85%) Strand = Plus / Plus Query: 385 catctgcctcgaggtggcgcgttgctgctggtgcgcgctgatgccggcgagcatgtacgc 444 |||||||||||| |||||||| |||||| ||||| ||| | |||||||||| |||||| Sbjct: 16641138 catctgcctcgacgtggcgcgctgctgcgcgtgcgagctcagcccggcgagcacgtacgc 16641197
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 48.1 bits (24), Expect = 0.028 Identities = 51/60 (85%) Strand = Plus / Plus Query: 385 catctgcctcgaggtggcgcgttgctgctggtgcgcgctgatgccggcgagcatgtacgc 444 |||||||||||| |||||||| |||||| ||||| ||| | |||||||||| |||||| Sbjct: 16649779 catctgcctcgacgtggcgcgctgctgcgcgtgcgagctcagcccggcgagcacgtacgc 16649838
>ref|NM_001030720.1| Gallus gallus similar to RIKEN cDNA 1300013J15 (LOC417617), mRNA Length = 2591 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 161 ggctgctgctgctgcccttgct 182 |||||||||||||||||||||| Sbjct: 2006 ggctgctgctgctgcccttgct 2027
>emb|AL606645.2|OSJN00079 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053K19, complete sequence Length = 187601 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 155 gccatgggctgctgctgctgcc 176 |||||||||||||||||||||| Sbjct: 82104 gccatgggctgctgctgctgcc 82125
>emb|AJ720238.1| Gallus gallus mRNA for hypothetical protein, clone 13e7 Length = 2591 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 161 ggctgctgctgctgcccttgct 182 |||||||||||||||||||||| Sbjct: 2006 ggctgctgctgctgcccttgct 2027
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 457 caggtagctctgccggttcgac 478 |||||||||||||||||||||| Sbjct: 981713 caggtagctctgccggttcgac 981734
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 155 gccatgggctgctgctgctgcc 176 |||||||||||||||||||||| Sbjct: 31748834 gccatgggctgctgctgctgcc 31748855
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 303 ccgccgtgcccgaccgcaccct 324 |||||||||||||||||||||| Sbjct: 1273091 ccgccgtgcccgaccgcaccct 1273070
>gb|AC156569.3| Mus musculus BAC clone RP23-315K10 from chromosome 13, complete sequence Length = 165570 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 162 gctgctgctgctgcccttgctc 183 |||||||||||||||||||||| Sbjct: 28594 gctgctgctgctgcccttgctc 28615
>gb|AC154557.2| Mus musculus BAC clone RP23-425M9 from 17, complete sequence Length = 186378 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 153 cagccatgggctgctgctgctg 174 |||||||||||||||||||||| Sbjct: 69349 cagccatgggctgctgctgctg 69370
>emb|CT030155.10| Mouse DNA sequence from clone RP23-425N11 on chromosome 17, complete sequence Length = 189713 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 153 cagccatgggctgctgctgctg 174 |||||||||||||||||||||| Sbjct: 103238 cagccatgggctgctgctgctg 103259
>emb|CT030714.5| Mouse DNA sequence from clone RP23-223P19 on chromosome 13, complete sequence Length = 176581 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 162 gctgctgctgctgcccttgctc 183 |||||||||||||||||||||| Sbjct: 141891 gctgctgctgctgcccttgctc 141912
>ref|NM_191356.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 510 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 162 gctgctgctgctgcccttgctcggc 186 |||||||||||||| |||||||||| Sbjct: 18 gctgctgctgctgctcttgctcggc 42
>ref|XM_525831.1| PREDICTED: Pan troglodytes lymphoid nuclear protein related to AF4 (LOC470450), mRNA Length = 3183 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 gctgctgctgctgcccttgct 182 ||||||||||||||||||||| Sbjct: 621 gctgctgctgctgcccttgct 601
>gb|BT019155.1| Zea mays clone Contig818.F mRNA sequence Length = 1093 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 151 cgcagccatgggctgctgctgctgc 175 |||||||||| |||||||||||||| Sbjct: 426 cgcagccatgtgctgctgctgctgc 402
>ref|NM_001025108.1| Homo sapiens AF4/FMR2 family, member 3 (AFF3), transcript variant 2, mRNA Length = 8136 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 gctgctgctgctgcccttgct 182 ||||||||||||||||||||| Sbjct: 1467 gctgctgctgctgcccttgct 1447
>ref|NM_002285.2| Homo sapiens AF4/FMR2 family, member 3 (AFF3), transcript variant 1, mRNA Length = 8153 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 gctgctgctgctgcccttgct 182 ||||||||||||||||||||| Sbjct: 1484 gctgctgctgctgcccttgct 1464
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 268 cgccgcctccgcaactggcgcagccgcca 296 |||||||| ||| |||||||||||||||| Sbjct: 760091 cgccgcctgcgcgactggcgcagccgcca 760063
>emb|AL353639.10| Human DNA sequence from clone RP11-664D14 on chromosome 9 Contains part of the MPDZ gene for multiple PDZ domain protein and GSSs, complete sequence Length = 103822 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 taaaattattcagagttcaaa 53 ||||||||||||||||||||| Sbjct: 48787 taaaattattcagagttcaaa 48807
>emb|AL139081.21| Human DNA sequence from clone RP11-179A7 on chromosome 13 Contains parts of 2 novel genes and the RFC3 gene for replication factor C (activator 1) 3, 38kDa, complete sequence Length = 185602 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 gccatgggctgctgctgctgc 175 ||||||||||||||||||||| Sbjct: 94024 gccatgggctgctgctgctgc 94004
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 216 gcagcagcatggcgcgcatgg 236 ||||||||||||||||||||| Sbjct: 579094 gcagcagcatggcgcgcatgg 579114
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 209 cgggagcgcagcagcatggcg 229 ||||||||||||||||||||| Sbjct: 1869571 cgggagcgcagcagcatggcg 1869591
>gb|BC036895.1| Homo sapiens AF4/FMR2 family, member 3, mRNA (cDNA clone IMAGE:5498133), partial cds Length = 2005 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 gctgctgctgctgcccttgct 182 ||||||||||||||||||||| Sbjct: 1429 gctgctgctgctgcccttgct 1409
>gb|AC126178.6| Homo sapiens 12 BAC RP11-567C2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 127439 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 gctgctgctgctgcccttgct 182 ||||||||||||||||||||| Sbjct: 115862 gctgctgctgctgcccttgct 115842
>dbj|AK092327.1| Homo sapiens cDNA FLJ35008 fis, clone OCBBF2012191, highly similar to LAF-4 PROTEIN Length = 2914 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 gctgctgctgctgcccttgct 182 ||||||||||||||||||||| Sbjct: 1557 gctgctgctgctgcccttgct 1537
>gb|AC093373.2| Homo sapiens BAC clone RP13-516J8 from 2, complete sequence Length = 25368 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 162 gctgctgctgctgcccttgct 182 ||||||||||||||||||||| Sbjct: 247 gctgctgctgctgcccttgct 267
>gb|AC008517.7| Homo sapiens chromosome 5 clone CTC-458G6, complete sequence Length = 198942 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 cattttgtatgcatatggcta 100 ||||||||||||||||||||| Sbjct: 21860 cattttgtatgcatatggcta 21880
>emb|BX930079.2| Gallus gallus finished cDNA, clone ChEST593b14 Length = 865 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 gctgctgctgctgcccttgct 182 ||||||||||||||||||||| Sbjct: 581 gctgctgctgctgcccttgct 561
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 gccatgggctgctgctgctgc 175 ||||||||||||||||||||| Sbjct: 13701930 gccatgggctgctgctgctgc 13701950
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 162 gctgctgctgctgcccttgctcggc 186 |||||||||||||| |||||||||| Sbjct: 32140230 gctgctgctgctgctcttgctcggc 32140206 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 425 atgccggcgagcatgtacgcccga 448 ||||||||||||||| |||||||| Sbjct: 13704527 atgccggcgagcatgcacgcccga 13704550 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 gggctgctgctgctgccctt 179 |||||||||||||||||||| Sbjct: 2145790 gggctgctgctgctgccctt 2145771
>gb|AC018690.5| Homo sapiens BAC clone RP11-527J8 from 2, complete sequence Length = 233117 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 162 gctgctgctgctgcccttgct 182 ||||||||||||||||||||| Sbjct: 231364 gctgctgctgctgcccttgct 231384
>dbj|AP003239.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0403C05 Length = 151085 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 162 gctgctgctgctgcccttgctcggc 186 |||||||||||||| |||||||||| Sbjct: 10983 gctgctgctgctgctcttgctcggc 10959
>ref|XM_343559.2| PREDICTED: Rattus norvegicus lymphoid nuclear protein related to AF4 (predicted) (Laf4_predicted), mRNA Length = 10512 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 gctgctgctgctgcccttgct 182 ||||||||||||||||||||| Sbjct: 7890 gctgctgctgctgcccttgct 7870
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 ctcctcctccggcatcatctg 390 ||||||||||||||||||||| Sbjct: 4870629 ctcctcctccggcatcatctg 4870609
>dbj|AP005904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1040D06 Length = 155034 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 gccatgggctgctgctgctgc 175 ||||||||||||||||||||| Sbjct: 100044 gccatgggctgctgctgctgc 100064
>dbj|AK108127.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-D06, full insert sequence Length = 954 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 162 gctgctgctgctgcccttgctcggc 186 |||||||||||||| |||||||||| Sbjct: 123 gctgctgctgctgctcttgctcggc 147
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 224 atggcgcgcatggccggcgtc 244 ||||||||||||||||||||| Sbjct: 2321333 atggcgcgcatggccggcgtc 2321353
>gb|U34360.1|HSU34360 Human lymphoid nuclear protein (LAF-4) mRNA, complete cds Length = 3857 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 162 gctgctgctgctgcccttgct 182 ||||||||||||||||||||| Sbjct: 1302 gctgctgctgctgcccttgct 1282
>ref|XM_550081.1| Oryza sativa (japonica cultivar-group), mRNA Length = 201 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 gggctgctgctgctgccctt 179 |||||||||||||||||||| Sbjct: 176 gggctgctgctgctgccctt 195
>ref|NM_183985.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 885 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 425 atgccggcgagcatgtacgcccga 448 ||||||||||||||| |||||||| Sbjct: 222 atgccggcgagcatgcacgcccga 199
>ref|NM_026415.1| Mus musculus RIKEN cDNA 2310002J15 gene (2310002J15Rik), mRNA Length = 776 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 ctgctgctgctgcccttgct 182 |||||||||||||||||||| Sbjct: 454 ctgctgctgctgcccttgct 473
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete sequence Length = 1438950 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 ccatgggctgctgctgctgc 175 |||||||||||||||||||| Sbjct: 296077 ccatgggctgctgctgctgc 296058
>ref|XM_415475.1| PREDICTED: Gallus gallus similar to prostaglandin E synthase isoform 1; microsomal glutathione S-transferase 1-like 1; tumor protein p53 inducible protein 12; p53-induced gene 12; p53-induced apoptosis protein 12; glutathione S-transferase 1-like 1; MGST1-like 1 ... (LOC417193), mRNA Length = 1365 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 150 ccgcagccatgggctgctgctgct 173 ||||||||||| |||||||||||| Sbjct: 1065 ccgcagccatgtgctgctgctgct 1088
>gb|AC145921.3| Pan troglodytes BAC clone RP43-10J15 from 7, complete sequence Length = 201403 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cgtaaaattattcagagttc 50 |||||||||||||||||||| Sbjct: 173102 cgtaaaattattcagagttc 173083
>gb|AC147050.2| Pan troglodytes BAC clone RP43-138F4 from 7, complete sequence Length = 190626 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 cgtaaaattattcagagttc 50 |||||||||||||||||||| Sbjct: 26084 cgtaaaattattcagagttc 26065
>ref|XM_571252.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNF00930) partial mRNA Length = 492 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 ccatgggctgctgctgctgc 175 |||||||||||||||||||| Sbjct: 82 ccatgggctgctgctgctgc 63
>gb|AC122471.4| Mus musculus BAC clone RP24-322M5 from chromosome 2, complete sequence Length = 206592 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 ctgctgctgctgcccttgct 182 |||||||||||||||||||| Sbjct: 28577 ctgctgctgctgcccttgct 28596
>gb|AC114737.3| Homo sapiens BAC clone CTD-2192D1 from 7, complete sequence Length = 99227 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 gctgctgctgctgcccttgc 181 |||||||||||||||||||| Sbjct: 58801 gctgctgctgctgcccttgc 58820
>emb|AL590483.32| Human DNA sequence from clone RP11-278H7 on chromosome 1 Contains the 3' end of a novel gene (LOC339529), the ZNF238 gene for zinc finger protein 238, a novel gene and a CpG island, complete sequence Length = 98228 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 ccatgggctgctgctgctgc 175 |||||||||||||||||||| Sbjct: 60624 ccatgggctgctgctgctgc 60605
>ref|XM_499831.1| Yarrowia lipolytica CLIB122, YALI0A07018g predicted mRNA Length = 3411 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 ccatgggctgctgctgctgc 175 |||||||||||||||||||| Sbjct: 2701 ccatgggctgctgctgctgc 2682
>gb|AC145450.4| Mus musculus strain C57BL/6J clone rp23-430i3, complete sequence Length = 208207 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 ctgctgctgctgcccttgct 182 |||||||||||||||||||| Sbjct: 195869 ctgctgctgctgcccttgct 195850
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29 Length = 339650 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 220 cagcatggcgcgcatggccggcgt 243 ||||||||||||| |||||||||| Sbjct: 266023 cagcatggcgcgcctggccggcgt 266000
>emb|AL606521.24| Mouse DNA sequence from clone RP23-280J3 on chromosome 11 Contains the 5' end of the Mtmr3 gene for myotubularin related protein 3, two novel genes, the gene for a novel protein similar to human ASC-1 complex subunit P100, the gene for a novel protein similar to human ubiquinol-cytochrome C reductase complex 7.2 kDa protein UQCR10, the Cabp7 gene for calcium binding protein 7, the 3' end of the Nf2 gene for neurofibromatosis 2 and two CpG islands, complete sequence Length = 233997 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 ggctgctgctgctgcccttg 180 |||||||||||||||||||| Sbjct: 153429 ggctgctgctgctgcccttg 153448
>dbj|D89547.1| Gallus gallus mRNA for vitellogenin I, complete cds Length = 5952 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 ctgctgctgctgcccttgct 182 |||||||||||||||||||| Sbjct: 3710 ctgctgctgctgcccttgct 3691
>gb|AF461326.1| Drosophila malerkotliana malerkotliana hunchback (hb) gene, partial cds Length = 471 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 ccatgggctgctgctgctgc 175 |||||||||||||||||||| Sbjct: 118 ccatgggctgctgctgctgc 99
>gb|AF461320.1| Drosophila mimetica hunchback (hb) gene, partial cds Length = 471 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 ccatgggctgctgctgctgc 175 |||||||||||||||||||| Sbjct: 100 ccatgggctgctgctgctgc 81
>gb|AF461319.1| Drosophila lucipennis hunchback (hb) gene, partial cds Length = 459 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 ccatgggctgctgctgctgc 175 |||||||||||||||||||| Sbjct: 97 ccatgggctgctgctgctgc 78
>ref|NM_142761.1| Drosophila melanogaster CG13859-RA (CG13859), mRNA Length = 384 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 catctgcctcgaggtggcgc 404 |||||||||||||||||||| Sbjct: 337 catctgcctcgaggtggcgc 318
>gb|AC007550.70| Mus musculus strain 129S6/SvEvTac chromosome 11a2 clone rp21-434h10, complete sequence Length = 199956 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 ggctgctgctgctgcccttg 180 |||||||||||||||||||| Sbjct: 146038 ggctgctgctgctgcccttg 146019
>emb|CR406830.1| Gallus gallus finished cDNA, clone ChEST736o3 Length = 1064 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 ctgctgctgctgcccttgct 182 |||||||||||||||||||| Sbjct: 40 ctgctgctgctgcccttgct 21
>dbj|AK003658.1| Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1110013E23 product:hypothetical protein, full insert sequence Length = 749 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 ctgctgctgctgcccttgct 182 |||||||||||||||||||| Sbjct: 420 ctgctgctgctgcccttgct 439
>gb|AC005522.2| Homo sapiens PAC clone RP5-1129E22 from 7, complete sequence Length = 149605 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 gctgctgctgctgcccttgc 181 |||||||||||||||||||| Sbjct: 14308 gctgctgctgctgcccttgc 14289
>dbj|AK009095.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310002J15 product:hypothetical protein, full insert sequence Length = 776 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 ctgctgctgctgcccttgct 182 |||||||||||||||||||| Sbjct: 454 ctgctgctgctgcccttgct 473
>gb|AE003738.3| Drosophila melanogaster chromosome 3R, section 76 of 118 of the complete sequence Length = 287397 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 catctgcctcgaggtggcgc 404 |||||||||||||||||||| Sbjct: 184624 catctgcctcgaggtggcgc 184643
>emb|BX322566.6| Zebrafish DNA sequence from clone CH211-209B6 in linkage group 23, complete sequence Length = 203127 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 catgggctgctgctgctgcc 176 |||||||||||||||||||| Sbjct: 177814 catgggctgctgctgctgcc 177795
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 gctgctgctgcccttgctcggccg 188 ||||||||| |||||||||||||| Sbjct: 24959124 gctgctgctccccttgctcggccg 24959147
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 399 tggcgcgttgctgctggtgcgcgctgat 426 ||||||||||||||||||| | |||||| Sbjct: 27511230 tggcgcgttgctgctggtgagtgctgat 27511203
>gb|AC009915.5|AC009915 Drosophila melanogaster, chromosome 3R, region 94A-94A, BAC clone BACR09L14, complete sequence Length = 167368 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 catctgcctcgaggtggcgc 404 |||||||||||||||||||| Sbjct: 94444 catctgcctcgaggtggcgc 94463
>gb|AC007472.6|AC007472 Drosophila melanogaster, chromosome 2R, region 49E-49F, BAC clone BACR30D19, complete sequence Length = 163052 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 159 tgggctgctgctgctgcccttgct 182 |||||||||||||||||| ||||| Sbjct: 88035 tgggctgctgctgctgccattgct 88012
>dbj|AP003205.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1146B04 Length = 145186 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 425 atgccggcgagcatgtacgcccga 448 ||||||||||||||| |||||||| Sbjct: 42855 atgccggcgagcatgcacgcccga 42878
>ref|XM_575082.1| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310002J15 (LOC499747), mRNA Length = 736 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 ctgctgctgctgcccttgct 182 |||||||||||||||||||| Sbjct: 416 ctgctgctgctgcccttgct 435
>ref|NM_001004408.1| Gallus gallus vitellogenin I (LOC424547), mRNA Length = 5952 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 ctgctgctgctgcccttgct 182 |||||||||||||||||||| Sbjct: 3710 ctgctgctgctgcccttgct 3691
>dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0657H12 Length = 142688 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 399 tggcgcgttgctgctggtgcgcgctgat 426 ||||||||||||||||||| | |||||| Sbjct: 102952 tggcgcgttgctgctggtgagtgctgat 102925
>dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0480E02 Length = 141862 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 gggctgctgctgctgccctt 179 |||||||||||||||||||| Sbjct: 66902 gggctgctgctgctgccctt 66883
>dbj|AP003336.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1151H08 Length = 123001 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 425 atgccggcgagcatgtacgcccga 448 ||||||||||||||| |||||||| Sbjct: 109765 atgccggcgagcatgcacgcccga 109788
>gb|AC113286.11| Mus musculus chromosome 1, clone RP23-411P10, complete sequence Length = 204629 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 ccatgggctgctgctgctgc 175 |||||||||||||||||||| Sbjct: 104366 ccatgggctgctgctgctgc 104347
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 cctcggtcgccgcctccgca 280 |||||||||||||||||||| Sbjct: 349654 cctcggtcgccgcctccgca 349635
>gb|AE003820.3| Drosophila melanogaster chromosome 2R, section 30 of 73 of the complete sequence Length = 263912 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 159 tgggctgctgctgctgcccttgct 182 |||||||||||||||||| ||||| Sbjct: 157247 tgggctgctgctgctgccattgct 157224
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 165 gctgctgctgcccttgctcggccg 188 ||||||||| |||||||||||||| Sbjct: 24887330 gctgctgctccccttgctcggccg 24887353
>emb|AL831797.4|CNS08CAA Oryza sativa chromosome 12, . BAC OSJNBa0010M16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132741 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 165 gctgctgctgcccttgctcggccg 188 ||||||||| |||||||||||||| Sbjct: 5744 gctgctgctccccttgctcggccg 5721
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 ccatgggctgctgctgctgc 175 |||||||||||||||||||| Sbjct: 683001 ccatgggctgctgctgctgc 682982
>emb|AL732309.9| Mouse DNA sequence from clone RP23-132N23 on chromosome 2, complete sequence Length = 221859 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 ctgctgctgctgcccttgct 182 |||||||||||||||||||| Sbjct: 131780 ctgctgctgctgcccttgct 131761
>emb|AL591404.4| Mouse DNA sequence from clone RP23-394O9 on chromosome 11, complete sequence Length = 203613 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 tgggctgctgctgctgccct 178 |||||||||||||||||||| Sbjct: 2050 tgggctgctgctgctgccct 2069
>emb|X15359.1|DVHB Drosophila virilis hunchback (hb) gene for zinc-finger protein transcription factor Length = 8807 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 ccatgggctgctgctgctgc 175 |||||||||||||||||||| Sbjct: 5914 ccatgggctgctgctgctgc 5895 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,843,154 Number of Sequences: 3902068 Number of extensions: 3843154 Number of successful extensions: 241979 Number of sequences better than 10.0: 86 Number of HSP's better than 10.0 without gapping: 88 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 239779 Number of HSP's gapped (non-prelim): 2200 length of query: 496 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 474 effective length of database: 17,147,199,772 effective search space: 8127772691928 effective search space used: 8127772691928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
